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A reviewer expresses the concern that it is too restrictive to consider only the global minima in the docking process when significantly populated conformers are concerned. In our earlier work (Ref. 16), the computational strategy we implemented did indeed use multiple conformers in the docking process. However, the working assumption here is that by using very long simulation times the individual molecules in each binary complex would undergo conformational transitions (this was found, see text) and accordingly, beginning on different locations of the PES by docking different conformers is not warranted. The results of our simulations agree with experimental separation factors, thus validating our approximation.
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