메뉴 건너뛰기




Volumn 50, Issue 2, 2000, Pages 131-140

The codon-degeneracy model of molecular evolution

Author keywords

Codon composition; Pocket gopher; Site degeneracy; Transition bias

Indexed keywords

CYTOCHROME B; CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA;

EID: 0033947771     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002399910015     Document Type: Article
Times cited : (27)

References (29)
  • 1
    • 0020024572 scopus 로고
    • Codon selection in yeast
    • Bennetzen JL, Hall BD (1982) Codon selection in yeast. J Biol Chem 257:3026-3031
    • (1982) J Biol Chem , vol.257 , pp. 3026-3031
    • Bennetzen, J.L.1    Hall, B.D.2
  • 2
    • 0022914759 scopus 로고
    • Compositional constraints and genome evolution
    • Bernardi G, Bernardi G (1986) Compositional constraints and genome evolution. J Mol Evol 24:1-11
    • (1986) J Mol Evol , vol.24 , pp. 1-11
    • Bernardi, G.1    Bernardi, G.2
  • 4
    • 0025775913 scopus 로고
    • Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
    • D'Onofrio G, Mouchiroud D, Aïssani B, Gautier C, Bernardi G (1991) Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins. J Mol Evol 32:504-510
    • (1991) J Mol Evol , vol.32 , pp. 504-510
    • D'Onofrio, G.1    Mouchiroud, D.2    Aïssani, B.3    Gautier, C.4    Bernardi, G.5
  • 5
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch WM (1970) Distinguishing homologous from analogous proteins. Syst Zool 19:99-113
    • (1970) Syst Zool , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 6
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees
    • Fitch WM, Margoliash E (1967) Construction of phylogenetic trees. Science 155:279-284
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 7
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman N, Yang Z (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 11: 725-736
    • (1994) Mol Biol Evol , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 8
    • 0016197604 scopus 로고
    • Amino acid difference formula to help explain protein evolution
    • Grantham R (1974) Amino acid difference formula to help explain protein evolution. Science 185:862-864
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 9
    • 0026066151 scopus 로고
    • Evolutionary genetics and zoogeography of middle American pocket gophers, genus Orthogeomys
    • Hafner MS (1991) Evolutionary genetics and zoogeography of Middle American pocket gophers, genus Orthogeomys. J Mammal 72:1-10
    • (1991) J Mammal , vol.72 , pp. 1-10
    • Hafner, M.S.1
  • 10
    • 0002474251 scopus 로고
    • Cospeciation in host-parasite assemblages: Comparative analysis of rates of evolution and timing of cospeciating events
    • Hafner MS, Nadler SA (1990) Cospeciation in host-parasite assemblages: Comparative analysis of rates of evolution and timing of cospeciating events. Syst Zool 39:192-204
    • (1990) Syst Zool , vol.39 , pp. 192-204
    • Hafner, M.S.1    Nadler, S.A.2
  • 12
    • 0026327996 scopus 로고
    • A quantitative measure of error minimization in the genetic code
    • Haig D, Hurst LD (1991) A quantitative measure of error minimization in the genetic code. J Mol Evol 33:412-417
    • (1991) J Mol Evol , vol.33 , pp. 412-417
    • Haig, D.1    Hurst, L.D.2
  • 13
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2:13-34
    • (1985) Mol Biol Evol , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0023064998 scopus 로고
    • Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons
    • Li W-H (1987) Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J Mol Evol 24:337-345
    • (1987) J Mol Evol , vol.24 , pp. 337-345
    • Li, W.-H.1
  • 17
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • Li W-H (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J Mol Evol 36:96-99
    • (1993) J Mol Evol , vol.36 , pp. 96-99
    • Li, W.-H.1
  • 18
    • 0021710490 scopus 로고
    • Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications
    • Li W-H, Wu C-I, Luo C-C (1984) Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications. J Mol Evol 21:58-71
    • (1984) J Mol Evol , vol.21 , pp. 58-71
    • Li, W.-H.1    Wu, C.-I.2    Luo, C.-C.3
  • 19
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • Li W-H, Wu C-I, Luo C-C (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2:150-174
    • (1985) Mol Biol Evol , vol.2 , pp. 150-174
    • Li, W.-H.1    Wu, C.-I.2    Luo, C.-C.3
  • 20
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 21
    • 0030310791 scopus 로고    scopus 로고
    • Temporal congruence revisited: Comparison of mitochondrial DNA sequence divergence in cospeciating pocket gophers and their chewing lice
    • Page RDM (1996) Temporal congruence revisited: Comparison of mitochondrial DNA sequence divergence in cospeciating pocket gophers and their chewing lice. Syst Biol 45:151-167
    • (1996) Syst Biol , vol.45 , pp. 151-167
    • Page, R.D.M.1
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0026822352 scopus 로고
    • Phylogenetic relationships among middle American pocket gophers (genus Orthogeomys) based on mitochondrial DNA sequences
    • Sudman PD, Hafner MS (1992) Phylogenetic relationships among middle American pocket gophers (genus Orthogeomys) based on mitochondrial DNA sequences. Mol Phylogenet Evol 1:17-25
    • (1992) Mol Phylogenet Evol , vol.1 , pp. 17-25
    • Sudman, P.D.1    Hafner, M.S.2
  • 25
    • 0022591495 scopus 로고
    • The classification of amino acid conservation
    • Taylor WR (1986) The classification of amino acid conservation. J Theoret Biol 119:205-218
    • (1986) J Theoret Biol , vol.119 , pp. 205-218
    • Taylor, W.R.1
  • 26
    • 0001062055 scopus 로고    scopus 로고
    • The excess of transitions among nucleotide substitutions: New methods of estimating transition bias underscore its importance
    • Wakeley J (1996) The excess of transitions among nucleotide substitutions: New methods of estimating transition bias underscore its importance. TREE 11:158-163
    • (1996) TREE , vol.11 , pp. 158-163
    • Wakeley, J.1
  • 28
    • 0029819269 scopus 로고    scopus 로고
    • On transition bias in mitochondrial genes of pocket gophers
    • Xia X, Hafner MS, Sudman PD (1996) On transition bias in mitochondrial genes of pocket gophers. J Mol Evol 43:32-40
    • (1996) J Mol Evol , vol.43 , pp. 32-40
    • Xia, X.1    Hafner, M.S.2    Sudman, P.D.3
  • 29
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analysis
    • Yang Z (1996) Among-site rate variation and its impact on phylogenetic analysis. TREE 11:367-371
    • (1996) TREE , vol.11 , pp. 367-371
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.