메뉴 건너뛰기




Volumn 50, Issue 2, 2000, Pages 154-169

Concerted evolution of a highly repetitive DNA family in eptatretidae (cyclostomata, agnatha) implies specifically differential homogenization and amplification events in their germ cells

Author keywords

Chromosome elimination; Concerted evolution; Hagfish; Repetitive DNA; Saltatory replication; Subrepeat; Tandem repeats

Indexed keywords

REPETITIVE DNA;

EID: 0033947138     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002399910017     Document Type: Article
Times cited : (21)

References (54)
  • 1
    • 0001908644 scopus 로고
    • Quantitative filter hybridisation
    • Harnes BD, Higgins SJ ed IRL, Oxford
    • Andersen MLM, Young BD (1985) Quantitative filter hybridisation. In: Harnes BD, Higgins SJ (ed) Nucleic acid hybridisation. IRL, Oxford, pp 73-111
    • (1985) Nucleic Acid Hybridisation , pp. 73-111
    • Andersen, M.L.M.1    Young, B.D.2
  • 2
    • 0003016687 scopus 로고
    • Concerted evolution of multigene families
    • Nei M, Koehn RK eds Sinauer, Sunderland, Boston
    • Arnheim N (1983) Concerted evolution of multigene families. In: Nei M, Koehn RK (eds) Evolution of genes and proteins. Sinauer, Sunderland, Boston, pp 38-61
    • (1983) Evolution of Genes and Proteins , pp. 38-61
    • Arnheim, N.1
  • 3
    • 0026783866 scopus 로고
    • Simulation study of a multigene family, with special reference to the evolution of compensatory advantageous mutations
    • Basten CJ, Ohta T (1992) Simulation study of a multigene family, with special reference to the evolution of compensatory advantageous mutations. Genetics 132:247-252
    • (1992) Genetics , vol.132 , pp. 247-252
    • Basten, C.J.1    Ohta, T.2
  • 4
    • 0014407722 scopus 로고
    • Repeated sequences in DNA
    • Britten RJ, Kohne DE (1968) Repeated sequences in DNA. Science 161:529-540
    • (1968) Science , vol.161 , pp. 529-540
    • Britten, R.J.1    Kohne, D.E.2
  • 5
    • 0027378236 scopus 로고
    • Population genetics of tandem repeats in centromeric heterochromatin: Unequal crossing-over and chromosomal divergence at the Responder locus of Drosophila melanogaster
    • Cabot EL, Doshi O, Wu M-L, Wu C-I (1993) Population genetics of tandem repeats in centromeric heterochromatin: Unequal crossing-over and chromosomal divergence at the Responder locus of Drosophila melanogaster. Genetics 135:477-4187
    • (1993) Genetics , vol.135 , pp. 477-4187
    • Cabot, E.L.1    Doshi, O.2    Wu, M.-L.3    Wu, C.-I.4
  • 6
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth B, Sinegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215-220
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sinegowski, P.2    Stephan, W.3
  • 7
    • 0029971137 scopus 로고    scopus 로고
    • Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons
    • Cronn RC, Zhao X, Paterson AH, Wendel JF (1996) Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons. J Mol Evol 42: 685-705
    • (1996) J Mol Evol , vol.42 , pp. 685-705
    • Cronn, R.C.1    Zhao, X.2    Paterson, A.H.3    Wendel, J.F.4
  • 8
    • 0027729030 scopus 로고
    • The detection and quantification of concerted evolution and molecular drive
    • Dover GA, Linares AR, Bowen T, Hancock JM (1993) The detection and quantification of concerted evolution and molecular drive. Methods Enzymol 224:525-541
    • (1993) Methods Enzymol , vol.224 , pp. 525-541
    • Dover, G.A.1    Linares, A.R.2    Bowen, T.3    Hancock, J.M.4
  • 9
    • 0029360612 scopus 로고
    • Concerted evolution of repetitive DNA sequences in eukaryotes
    • Elder JF, Turner BJ (1995) Concerted evolution of repetitive DNA sequences in eukaryotes. Q Rev Biol 70:297-320
    • (1995) Q Rev Biol , vol.70 , pp. 297-320
    • Elder, J.F.1    Turner, B.J.2
  • 12
    • 0002178208 scopus 로고    scopus 로고
    • Highly repetitive DNA sequences that are restricted to the germ line in the hagfish Eptatretus cirrhatus: A mosaic of eliminated elements
    • Goto Y, Kubota S, Kohno S (1998) Highly repetitive DNA sequences that are restricted to the germ line in the hagfish Eptatretus cirrhatus: A mosaic of eliminated elements. Chromosoma 107:17-32
    • (1998) Chromosoma , vol.107 , pp. 17-32
    • Goto, Y.1    Kubota, S.2    Kohno, S.3
  • 13
    • 34250082786 scopus 로고
    • Organization and molecular cytogenetics of a satellite DNA family from Hoplias malabaricus (Pisces, Erthrinidae)
    • Haaf T, Schmid M, Steinlein C, Galetti PM, Willard HF (1993) Organization and molecular cytogenetics of a satellite DNA family from Hoplias malabaricus (Pisces, Erthrinidae). Chromosome Res 1:77-86
    • (1993) Chromosome Res , vol.1 , pp. 77-86
    • Haaf, T.1    Schmid, M.2    Steinlein, C.3    Galetti, P.M.4    Willard, H.F.5
  • 14
    • 0028946212 scopus 로고
    • Intraspecific and interspecific variation in 5S RNA gene are decoupled in diploid wheat relatives
    • Kellogg EA, Appels R (1995) Intraspecific and interspecific variation in 5S RNA gene are decoupled in diploid wheat relatives. Genetics 140:325-343
    • (1995) Genetics , vol.140 , pp. 325-343
    • Kellogg, E.A.1    Appels, R.2
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0022604789 scopus 로고
    • Chromosome elimination in Japanese hagfish, Eptatretus burgeri (Agnatha, Cyclostomata)
    • Kohno S, Nakai Y, Sato S, Yoshida M, Kobayashi H (1986) Chromosome elimination in Japanese hagfish, Eptatretus burgeri (Agnatha, Cyclostomata). Cytogenet Cell Genet 41:209-214
    • (1986) Cytogenet Cell Genet , vol.41 , pp. 209-214
    • Kohno, S.1    Nakai, Y.2    Sato, S.3    Yoshida, M.4    Kobayashi, H.5
  • 17
    • 0002846215 scopus 로고    scopus 로고
    • Chromatin diminution and chromosome elimination in hagfish species
    • Jørgensen JM, Lomholt JP, Weber RE, Malte H eds. Chapman and Hall, London
    • Kohno S, Kubota S, Nakai Y (1998) Chromatin diminution and chromosome elimination in hagfish species. In: Jørgensen JM, Lomholt JP, Weber RE, Malte H (eds) The biology of hagfishes. Chapman and Hall, London, pp 81-100
    • (1998) The Biology of Hagfishes , pp. 81-100
    • Kohno, S.1    Kubota, S.2    Nakai, Y.3
  • 18
    • 45249126273 scopus 로고
    • Recovery of DNA from agarose gels using liquid nitrogen
    • Könen M (1989) Recovery of DNA from agarose gels using liquid nitrogen. Trends Genet 5:137
    • (1989) Trends Genet , vol.5 , pp. 137
    • Könen, M.1
  • 19
    • 0027397648 scopus 로고
    • Germ line-restricted, highly repeated DNA sequences and their chromosomal localization in a Japanese hagfish (Eptatretus okinoseanus)
    • Kubota S, Kuro-o M, Mizuno S, Kohno S (1993) Germ line-restricted, highly repeated DNA sequences and their chromosomal localization in a Japanese hagfish (Eptatretus okinoseanus). Chromosoma 102:163-173
    • (1993) Chromosoma , vol.102 , pp. 163-173
    • Kubota, S.1    Kuro-o, M.2    Mizuno, S.3    Kohno, S.4
  • 20
    • 0030713351 scopus 로고    scopus 로고
    • A germ line-restricted, highly repetitive DNA sequences: An interspecifically conserved, but somatically eliminated, element
    • Kubota S, Ishibashi T, Kohno S (1997) A germ line-restricted, highly repetitive DNA sequences: An interspecifically conserved, but somatically eliminated, element. Mol Gen Genet 256:252-256
    • (1997) Mol Gen Genet , vol.256 , pp. 252-256
    • Kubota, S.1    Ishibashi, T.2    Kohno, S.3
  • 21
    • 0028277835 scopus 로고
    • Aspects of nonrandom turnover involved in the concerted evolution of intergenic spacers within the ribosomal DNA of Drosophila melanogaster
    • Linares AR, Bowen T, Dover GA (1994) Aspects of nonrandom turnover involved in the concerted evolution of intergenic spacers within the ribosomal DNA of Drosophila melanogaster. J Mol Evol 39:151-159
    • (1994) J Mol Evol , vol.39 , pp. 151-159
    • Linares, A.R.1    Bowen, T.2    Dover, G.A.3
  • 23
    • 0020480847 scopus 로고
    • Nucleotide sequence of satellite DNA contained in the eliminated genome of Ascaris lumbricoides
    • Müller F, Walker P, Aeby P, Neuhaus H, Felder H, Back E, Tobler H (1982) Nucleotide sequence of satellite DNA contained in the eliminated genome of Ascaris lumbricoides. Nucleic Acids Res 10:7493-7510
    • (1982) Nucleic Acids Res , vol.10 , pp. 7493-7510
    • Müller, F.1    Walker, P.2    Aeby, P.3    Neuhaus, H.4    Felder, H.5    Back, E.6    Tobler, H.7
  • 24
    • 0021322957 scopus 로고
    • The evolution of multigene families under intrachromosomal gene conversion
    • Nagylaki T (1984a) The evolution of multigene families under intrachromosomal gene conversion. Genetics 106:529-548
    • (1984) Genetics , vol.106 , pp. 529-548
    • Nagylaki, T.1
  • 25
    • 0346840489 scopus 로고
    • Evolution of multigene families under interchromosomal gene conversion
    • Nagylaki T (1984b) Evolution of multigene families under interchromosomal gene conversion. Proc Natl Acad Sci USA 81:3796-3800
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 3796-3800
    • Nagylaki, T.1
  • 26
    • 0025104260 scopus 로고
    • Gene conversion, linkage, and the evolution of repeated genes dispersed among multiple chromosomes
    • Nagylaki T (1990) Gene conversion, linkage, and the evolution of repeated genes dispersed among multiple chromosomes. Genetics 126:261-276
    • (1990) Genetics , vol.126 , pp. 261-276
    • Nagylaki, T.1
  • 27
    • 0008553103 scopus 로고
    • Elimination of the largest chromosome pair during differentiation into somatic cells in Japanese hagfish, Myxine garmani (Cyclostomata, Agnatha)
    • Nakai Y, Kohno S (1987) Elimination of the largest chromosome pair during differentiation into somatic cells in Japanese hagfish, Myxine garmani (Cyclostomata, Agnatha). Cytogenet Cell Genet 45: 80-83
    • (1987) Cytogenet Cell Genet , vol.45 , pp. 80-83
    • Nakai, Y.1    Kohno, S.2
  • 28
    • 0025732410 scopus 로고
    • Chromatin diminution and chromosome elimination in four Japanese hagfish species
    • Nakai Y, Kubota S, Kohno S (1991) Chromatin diminution and chromosome elimination in four Japanese hagfish species. Cytogenet Cell Genet 54:196-198
    • (1991) Cytogenet Cell Genet , vol.54 , pp. 196-198
    • Nakai, Y.1    Kubota, S.2    Kohno, S.3
  • 29
    • 0029062982 scopus 로고
    • Chromosome elimination in three Baltic, south Pacific and northeast Pacific hagfish species
    • Nakai Y, Kubota S, Goto Y, Ishibashi T, Davison W, Kohno S (1995) Chromosome elimination in three Baltic, south Pacific and northeast Pacific hagfish species. Chromosome Res 3:321-330
    • (1995) Chromosome Res , vol.3 , pp. 321-330
    • Nakai, Y.1    Kubota, S.2    Goto, Y.3    Ishibashi, T.4    Davison, W.5    Kohno, S.6
  • 30
    • 0020743784 scopus 로고
    • On the evolution of multigene families
    • Ohta T (1983) On the evolution of multigene families. Theor Popul Biol 23:216-240
    • (1983) Theor Popul Biol , vol.23 , pp. 216-240
    • Ohta, T.1
  • 31
    • 0021362937 scopus 로고
    • Some models of gene conversion for treating the evolution of multigene families
    • Ohta T (1984) Some models of gene conversion for treating the evolution of multigene families. Genetics 106:517-528
    • (1984) Genetics , vol.106 , pp. 517-528
    • Ohta, T.1
  • 32
    • 0025377889 scopus 로고
    • How gene families evolve
    • Ohta T (1990) How gene families evolve. Theor Popul Biol 37:213-219
    • (1990) Theor Popul Biol , vol.37 , pp. 213-219
    • Ohta, T.1
  • 33
    • 0020790321 scopus 로고
    • Population genetics of multigene families that are dispersed into two or more chromosomes
    • Ohta T, Dover GA (1983) Population genetics of multigene families that are dispersed into two or more chromosomes. Proc Natl Acad Sci USA 80:4079-4083
    • (1983) Proc Natl Acad Sci USA , vol.80 , pp. 4079-4083
    • Ohta, T.1    Dover, G.A.2
  • 34
    • 0021191315 scopus 로고
    • The cohesive population genetics of molecular drive
    • Ohta T, Dover GA (1984) The cohesive population genetics of molecular drive. Genetics 108:501-521
    • (1984) Genetics , vol.108 , pp. 501-521
    • Ohta, T.1    Dover, G.A.2
  • 35
    • 0003084141 scopus 로고
    • Suikohsha, Tokyo (in Japanese)
    • Ojima Y (1983) Fish cytogenetics. Suikohsha, Tokyo (in Japanese)
    • (1983) Fish Cytogenetics
    • Ojima, Y.1
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 39
    • 0028500562 scopus 로고
    • Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchanges drive concerted evolution
    • Schlötterer C, Tautz D (1994) Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchanges drive concerted evolution. Curr Biol 4:777-783
    • (1994) Curr Biol , vol.4 , pp. 777-783
    • Schlötterer, C.1    Tautz, D.2
  • 40
    • 0002140820 scopus 로고    scopus 로고
    • Chromosome elimination and germ line-restricted microchromosomes in Paramyxine sheni from Taiwan
    • Shichiri M, Kikuma Y, Kuo C-H, Liu L-L, Kubota S, Kohno S (1997) Chromosome elimination and germ line-restricted microchromosomes in Paramyxine sheni from Taiwan. Chromosome Sci 1:49-53
    • (1997) Chromosome Sci , vol.1 , pp. 49-53
    • Shichiri, M.1    Kikuma, Y.2    Kuo, C.-H.3    Liu, L.-L.4    Kubota, S.5    Kohno, S.6
  • 41
    • 0017294484 scopus 로고
    • Evolution of repeated DNA sequences by unequal crossover
    • Smith GP (1976) Evolution of repeated DNA sequences by unequal crossover. Science 191:528-535
    • (1976) Science , vol.191 , pp. 528-535
    • Smith, G.P.1
  • 42
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kans Sci Bull 28:1409-1438
    • (1958) Univ Kans Sci Bull , vol.28 , pp. 1409-1438
    • Sokal, R.R.1    Michener, C.D.2
  • 43
    • 0014958744 scopus 로고
    • Base sequence and evolution of guinea pig satellite DNA
    • Southern EM (1970) Base sequence and evolution of guinea pig satellite DNA. Nature 227:794-798
    • (1970) Nature , vol.227 , pp. 794-798
    • Southern, E.M.1
  • 44
    • 0024538748 scopus 로고
    • Tandem-repetitive noncoding DNA: Forms and forces
    • Stephan W (1989) Tandem-repetitive noncoding DNA: forms and forces. Mol Biol Evol 6:198-212
    • (1989) Mol Biol Evol , vol.6 , pp. 198-212
    • Stephan, W.1
  • 45
    • 0020480358 scopus 로고
    • Chromatin diminution in Ascaris suum: Nucleotide sequences of the eliminated satellite DNA
    • Streeck RE, Moritz KB, Beer K (1982) Chromatin diminution in Ascaris suum: Nucleotide sequences of the eliminated satellite DNA. Nucleic Acids Res 10:3495-3502
    • (1982) Nucleic Acids Res , vol.10 , pp. 3495-3502
    • Streeck, R.E.1    Moritz, K.B.2    Beer, K.3
  • 46
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 48
    • 0015293715 scopus 로고
    • Molecular aspects of chromatin elimination in Ascaris lumbricoides
    • Tobler H, Smith KD, Ursprung H (1972) Molecular aspects of chromatin elimination in Ascaris lumbricoides. Dev Biol 27:190-203
    • (1972) Dev Biol , vol.27 , pp. 190-203
    • Tobler, H.1    Smith, K.D.2    Ursprung, H.3
  • 49
    • 0020466805 scopus 로고
    • Demonstration of W chromosome-specific repetitive DNA sequences in the domestic fowl, Callus g. domesticus
    • Tone M, Nakano N, Takao E, Narisawa S, Mizuno S (1982) Demonstration of W chromosome-specific repetitive DNA sequences in the domestic fowl, Callus g. domesticus. Chromosoma 86:551-569
    • (1982) Chromosoma , vol.86 , pp. 551-569
    • Tone, M.1    Nakano, N.2    Takao, E.3    Narisawa, S.4    Mizuno, S.5
  • 50
    • 0023634094 scopus 로고
    • Production of single-strand plasmid DNA
    • Vieira J, Messing J (1987) Production of single-strand plasmid DNA. Methods Enzymol 153:3-11
    • (1987) Methods Enzymol , vol.153 , pp. 3-11
    • Vieira, J.1    Messing, J.2
  • 51
    • 0023297258 scopus 로고
    • Persistence of tandem arrays: Implications for satellite and simple-sequence DNAs
    • Walsh JB (1987) Persistence of tandem arrays: Implications for satellite and simple-sequence DNAs. Genetics 115:553-567
    • (1987) Genetics , vol.115 , pp. 553-567
    • Walsh, J.B.1
  • 52
    • 0026408828 scopus 로고
    • Genomic distribution of heterochromatic sequences in equids: Implications to rapid chromosomal evolution
    • Wichman HA, Payne CT, Ryder OA, Hamilton MJ, Maltbie M, Baker RJ (1991) Genomic distribution of heterochromatic sequences in equids: Implications to rapid chromosomal evolution. J Hered 82: 369-377
    • (1991) J Hered , vol.82 , pp. 369-377
    • Wichman, H.A.1    Payne, C.T.2    Ryder, O.A.3    Hamilton, M.J.4    Maltbie, M.5    Baker, R.J.6
  • 53
    • 0023224740 scopus 로고
    • Hierarchical order in chromosome-specific human alpha satellite DNA
    • Willard HF, Waye JS (1987) Hierarchical order in chromosome-specific human alpha satellite DNA. Trends Genet 3:192-198
    • (1987) Trends Genet , vol.3 , pp. 192-198
    • Willard, H.F.1    Waye, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.