AutoDep: A web-based system for deposition and validation of macromolecular structural

Acta Crystallographica Section D: Biological Crystallography

Volumn 56, Issue 7, 2000, Pages 828-841

  Lin, Dawei ^a   Manning, Nancy O ^a   Jiang, Jiansheng ^a   Abola, Enrique E ^a,c   Stampf, David ^a   Prilusky, Jaime ^b   Sussman, Joel L ^a,b  

^a BROOKHAVEN NATIONAL LABORATORY   (United States)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^c SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER INTERFACE; COMPUTER SECURITY; DATA BASE; INTERNET; LINGUISTICS; MACROMOLECULE;

COMPUTER SECURITY; DATABASE MANAGEMENT SYSTEMS; INTERNET; MACROMOLECULAR SUBSTANCES; USER-COMPUTER INTERFACE; VOCABULARY;

EID: 0033924043     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444900005655     Document Type: Article

References (25)

1. Abola, E. E., Bernstein, F. C., Bryant, S. H., Koetzle, T. F. & Weng, J. (1987). Crystallographic Databases - Information Content, Software Systems, Scientific Applications, edited by F. H. Allen, G. Bergerhoff & R. Sievers, pp. 107-132. Bonn: Data Commission of the International Union of Crystallography.
2. Abola, E. E., Bernstein, F. C., Callaway, J., Cummings, M., Deroski, B., Esposito, P., Forman, A., Langdon, P., Libeson, M., Manning, N. O., McCarthy, J., Shea, R., Sikora, J., Stampf, D., Xue, D. & Sussman, J. L. (1996). The Protein Data Bank Contents Guide: Atomic Coordinate Entry Format Description. ftp://ftp.rcsb.org/ pub/pdb/doc/format_descriptions/Contents_Guide_21.html.
3. Abola, E. E. & Manning, N. O. (1997). Protein Data Bank Quart. Newslett. 82, 2.
4. Abola, E. E., Sussman, J. L., Prilusky, J. & Manning, N. O. (1997). Methods Enzymol. 277, 556-571.
5. Bairoch, A. & Boeckmann, B. (1994). Nucleic Acids Res. 22, 3578-3580.
6. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F. Jr, Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977). J. Mol. Biol. 112, 535-542.
7. Brünger, A. T. (1992). X-PLOR Version 3.1. A System for Crystallography and NMR. Yale University, New Haven, USA.
8. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
9. Brünger, A. T., Adams, P. D. & Rice, L. M. (1997). Structure, 5, 325-336.
10. Hall, S. R., Allen, F. H. & Brown, I. D. (1991). Acta Cryst. A47, 655-685.
11. Hooft, R. W. W., Vriend, G., Sander, C. & Abola, E. E. (1996). Nature (London), 381, 272.
12. Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
13. Manning, N. O. (1996). Protein Data Bank Quart. Newslett. 77, 2.
14. Manning, N. O. (1996). Protein Data Bank Quart. Newslett. 78, 2.
15. Murshudov, G. N., Vagin, A. A., Lebedev, A., Wilson, K. S. & Dodson, E. J. (1999). Acta Cryst. D55, 247-255.
16. Protein Data Bank (1971). Crystallography, Protein Data Bank [announcement]. Nature New Biol. 233, 223.
17. Schwartz, R. L. & Wall, L. (1992). Programming Perl. Sebastopolo: O'Reilly & Associates, Inc.
18. Seavey, B. R., Farr, E. A., Westler, W. M. & Markley, J. L. (1991). J. Biomol. NMR, 1, 217-236.
19. Sheldrick, G. M. (1997). Proceedings of the CCP4 Study Weekend. Recent Advances in Phasing, edited by K. S. Wilson, G. Davies, A. Ashton & S. Bailey, pp. 147-157. Warrington: Daresbury Laboratory.
20. Stampf, D. (1994). Protein Data Bank Quart. Newslett. 70, 1.
21. Stampf, D. (1995). Protein Data Bank Quart. Newslett. 71, 7.
22. Sussman, J. L. (1997). Protein Data Bank Quart. Newslett. 79, 1.
23. Sussman, J. L., Lin, D., Jiang, J., Manning, N. O., Prilusky, J., Ritter, O. & Abola, E. E. (1998). Acta Cryst. D54, 1078-1084.
24. Tronrud, D. E., Ten Eyck, L. F. & Matthews, B. W. (1987). Acta Cryst. A43, 489-501.
25. Vriend, G. (1990). J. Mol. Graph. Model. 8, 52-56.