Deletion of an insulator element by the mutation facet-strawberry Drosophila melanogaster

Genetics

Volumn 155, Issue 3, 2000, Pages 1297-1311

  Vazquez, Julio ^a   Schedl, Paul ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; NOTCH RECEPTOR;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CHROMOSOME DELETION; CHROMOSOME MUTATION; CHROMOSOME STRUCTURE; CONTROLLED STUDY; DELETION MUTANT; DROSOPHILA MELANOGASTER; EMBRYO; ENHANCER REGION; EYE COLOR; GENE FUNCTION; GENE LOCUS; NONHUMAN; POLYTENE CHROMOSOME; POSITION EFFECT; PRIORITY JOURNAL; PROMOTER REGION; REPORTER GENE; SEQUENCE ANALYSIS; TRANSGENE;

5' UNTRANSLATED REGIONS; ANIMALS; ANIMALS, GENETICALLY MODIFIED; BASE SEQUENCE; CHROMATIN; CHROMOSOME MAPPING; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENE EXPRESSION; GENES, REPORTER; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; MUTATION; PHENOTYPE; PROMOTER REGIONS (GENETICS); RECEPTORS, NOTCH; RESTRICTION MAPPING; SEQUENCE DELETION; TRANSGENES;

ANIMALIA; DROSOPHILA MELANOGASTER; EUKARYOTA; FRAGARIA X ANANASSA; MELANOGASTER;

EID: 0033911328     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (63)

1. ARKHIPOVA, I. R., 1995 Promoter elements in Drosophila melanogaster revealed by sequence analysis. Genetics 139: 1359-1369.
2. ARTAVANIS-TSAKONAS, S., 1988 The molecular biology of the Notch locus and the fine tuning of differentiation in Drosophila. Trends Genet. 4: 95-100.
3. ARTAVANIS-TSAKONAS, S., M. A. T. MUSKAVITCH and B. YEDVOBNICK, 1983 Molecular cloning of Notch, a locus affecting neurogenesis in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 80: 1977-1981.
4. AVRAMOVA, Z., and A. TIKHONOV, 1999 Are scs and scs′ 'neutral' chromatin domain boundaries of the 87A7 locus in vivo? Trends Genet. 15: 138-139.
5. BELL, A. C., and G. FELSENFELD, 1999 Stopped at the border: boundaries and insulators. Curr. Opin. Genet. Dev. 9: 191-198.
6. BELL, A. C., A. G. WEST and G. FELSENFELD, 1999 The protein CTCF is required for the enhancer blocking activity of vertebrate insulators. Cell 98: 387-396.
7. BURKE, T. W., and J. T. KADONAGA, 1996 Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box deficient promoters. Genes Dev. 10: 711-724.
8. 1160 of Drosophila. Genes Dev. 11: 3020-3031.
9. CAI, H., and M. LEVINE, 1995 Modulation of enhancer-promoter interactions by insulators in the Drosophila embryo. Nature 376: 533-536.
10. CHUNG, J. H., M. WHITELEY and G. FELSENFELD, 1993 A 5′ element of the chicken b-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila. Cell 74: 505-514.
11. CHUNG, J. H., A. C. BELL and G. FELSENFELD, 1997 Characterization of the chicken beta-globin insulator. Proc. Natl. Acad. Sci. USA 94: 575-580.
12. DILLON, N., T. TRIMBORN, J. STROUBOULIS, P. FRASER and F. GROSVELD, 1997 The effect of distance on long-range chromatin interactions. Mol. Cell 1: 131-139.
13. DORSETT, D., 1993 Distance-independent inactivation of an enhancer by the suppressor of Hairy-wing DNA-binding protein. Genetics 134: 1135-1144.
14. GALLONI, M., H. GYURKOVICS, P. SCHEDL and F. KARCH, 1993 The bluetail transposon: evidence for independent cis-regulatory domains and domain boundaries in the bithorax complex. EMBO J. 12: 1087-1097.
15. GASZNER, M., J. VAZQUEZ and P. SCHEDL, 1999 The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction. Genes Dev. 13: 2098-2107.
16. GERASIMOVA, T. I., and V. G. CORCES, 1998 Polycomb and trithorax group proteins mediate the function of a chromatin insulator. Cell 92: 511-521.
17. GERASIMOVA, T. I., and V. G. CORCES, 1999 Domains and boundaries in chromosomes. Results Probl. Cell Differ. 25: 229-249.
18. GERASIMOVA, T. I., D. A. GDULA, D. V. GERASIMOV, O. SIMONOVA and V. G. CORCES, 1995 A Drosophila protein that imparts directionality on a chromatin insulator is an enhancer of position-effect variegation. Cell 82: 587-597.
19. GEYER, P. K., 1997 The role of insulator elements in defining domains of gene expression. Curr. Opin. Genet. Dev. 7: 242-248.
20. GEYER, P. K., and V. G. CORCES, 1992 DNA position-specific repression of transcription by a Drosophila zinc finger protein. Genes Dev. 6: 1865-1873.
21. GEYER, P. K., M. M. GREEN and V. G. CORCES, 1988 Mutant gene phenotypes mediated by a Drosophila melanogaster retrotransposon require sequences similar to mammalian enhancers. Proc. Natl. Acad. Sci. USA 85: 8593-8597.
22. GLOVER, D. M., M. H. LEIBOWITZ, D. A. MCLEAN and H. PARRY, 1995 Mutations in aurora prevent centrosome separation leading to the formation of monopolar spindles. Cell 81: 95-105.
23. GREEN, M. M., 1961 Back mutation in Drosophila melanogaster. I. X-ray induced back mutations at the yellow, scute and white loci. Genetics 46: 671-682.
24. GREEN, M. M., 1962 Back mutation in Drosophila melanogaster. II. Data on additional yellow and white mutants. Genetics 47: 483-488.
25. GREENWALD, I., 1994 Structure/function studies of lin12/Notch proteins. Curr. Opin. Genet. Dev. 4: 556-562.
26. GRIMWADE, B. G., M. A. T. MUSKAVITCH, W. J. WELSHONS, B. YEDVOBNICK and S. ARTAVANIS-TSAKONAS, 1985 The molecular genetics of the Notch locus in Drosophila melanogaster. Dev. Biol. 107: 503-509.
27. GYURKOVICS, H., J. GAUSZ, J. KUMMER and F. KARCH, 1990 A new homeotic mutation in the Drosophila bithorax complex reimoves a boundary separating two domains of regulation. EMBO J. 9: 2579-2585.
28. HAGSTROM, K., M. MULLER and P. SCHEDL, 1996 Fab-7 fucntions as a chromatin domain boundary to ensure proper segment specification bt the Drosophila bithorax complex. Genes Dev. 10: 3202-3125.
29. HART, C. M., K. ZHAO and U. K. LAEMMLI, 1997 The scs′ boundary element: characterization of boundary element-associated factors. Mol. Cell. Biol. 17: 999-1009.
30. HIROMI, Y., and W. J. GEHRING, 1987 Regulation and function of the Drosophila segmentation gene fushi tarazu. Cell 50: 963-974.
31. HOLDRIDGE, C., and D. DORSETT, 1991 Repression of hsp70 heat shock gene trancsription by the suppressor of hairy wing protein of Drosophila melanogaster. Mol. Cell. Biol. 11: 1894-1900.
32. KELLUM, R., and S. C. R. ELGIN, 1998 Chromatin boundaries: punctuating the genome. Curr. Biol. 8: R521-R524.
33. KELLUM, R., and P. SCHEDL, 1992 A group of scs elements function as domain boundaries in an enhancer-blocking assay. Mol. Cell. Biol. 12: 2424-2431.
34. KELLUM, R., and P. SCHEDL, 1991 A position-effect assay for boundaries of higher order chromosomal domains. Cell 64: 941-950.
35. KEPPY, D. O., and W. J. WELSHONS, 1977 The cytogenetics of a recessive visible mutant associated with a deficiency adjacent to the Notch locus in Drosophila melanogaster. Genetics 85: 497-506.
36. KEPPY, D. O., and W. J. WELSHONS, 1980 The synthesis of compound bands in Drosophila melanogaster salivary gland chromosomes. Chromosoma 76: 191-200.
37. KIDD, S., T. J. LOCKETT and M. W. YOUNG, 1983 The Notch locus of Drosophila melanogaster Cell 34: 421-433.
38. KIDD, S., M. R. KELLEY and M. W. YOUNG, 1986 Sequence of the Notch locus of Drosophila melanogaster. Relationship of the encoded protein to mammalian clotting and growth factors. Mol. Cell. Biol. 6: 3094-3108.
39. MIHALY, J., I. HOGGA, J. GAUSZ, H. GYURKOVICS and F. KARCH, 1997 In situ dissection of the Fab-7 region of the bithorax complex into a chromatin domain boundary and a Polycomb-response element. Development 124: 1809-1820.
40. MIHALY, J., I. HOGGA, S. BARGES, M. GALLONI, R. K. MISHRA et al., 1998 Chromatin domain boundaries in the bithorax complex. Cell. Mol. Life Sci. 54: 60-70.
41. OHTSUKI, S., and M. LEVINE, 1998 GAGA mediates the enhancer blocking activity of the eve promoter in the Drosophila embryo. Genes Dev. 12: 3325-3330.
42. PEIFER, M., and W. BENDER, 1988 Sequences of the gypsy transposon of Drosophila necessary for its effect on adjacent genes. Proc. Natl. Acad. Sci. USA 85: 9650-9654.
43. RAMOS, R. G. P., B. G. GRIMWADE, K. A. WHARTON, T. NELSON-SCOTTGALE and S. ARTAVANIS-TSAKONAS, 1989 Physical and functional definition of the Drosophila Notch locus by P element transformation. Genetics 123: 337-348.
44. ROSEMAN, R. R., V. PIRROTTA and P. K. GEYER, 1993 The su(Hw) protein insulates expression of the Drosophila melanogaster white gene from chromosomal position-effects. EMBO J. 12: 435-442.
45. RYKOWSKI, M. C., S. J. PARMELEE, D. A. AGARD and J. W. SEDAT, 1988 Precise determination of the molecular limits of a polytene chromosome band: regulatory sequences for the Notch gene are in the interband. Cell 54: 461-472.
46. SCOTT, K. S., and P. K. GEYER, 1995 Effects of the su(Hw) insulator protein on the expression of the divergently transcribed Drosophila yolk protein genes. EMBO J. 14: 6258-6267.
47. SMALE, S. T., 1997 Transcription initiation from TATA-less promoters within eukaryotic protein-coding genes. Biochem. Biophys. Acta 1351: 73-88.
48. SMITH, P. A., and V. G. CORCES, 1992 The suppressor of Hairy-wing binding region is required for gypsy mutagenesis. Mol. Gen. Genet. 233: 65-70.
49. SMITH, P. A., and V. G. CORCES, 1995 The suppressor of Hairy wing Protein regulates the tissue-specific expression of the Drosophila gypsy retrotransposon. Genetics 139: 215-228.
50. SPRADLING, A. L., and G. M. RUBIN, 1982 Transformation of cloned P elemnts into Drosophila germline chromosomes. Science 218: 341-347.
51. TOMLINSON, A., B. E. KIMMEL and G. M. RUBIN, 1988 rough, a Drosophila homeobox gene required in photoreceptors R2 and R5 for inductive interactions in the developing eye. Cell 55: 771-784.
52. UDVARDY, A., 1999 Dividing the empire: boundary chromatin elements delimit the territory of enhancers. EMBO J. 18: 1-8.
53. UDVARDY, A., E. MAINE and P. SCHEDL, 1985 The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains. J. Mol. Biol. 185: 341-358.
54. VAZQUEZ, J., and P. SCHEDL, 1994 Sequences required for enhancer blocking activity of scs are located within two nuclease-hypersensitive regions. EMBO J. 13: 5984-5993.
55. WELSHONS, W. J., and D. O. KEPPY, 1975 Intragenic deletions and salivary gland relationships in Drosophila. Genetics 80: 143-155.
56. WELSHONS, W. J., and D. O. KEPPY, 1981 The recombinational analysis of aberrations and the position of the Notch locus on the polytene chromosomes of Drosophila. Mol. Gen. Genet. 181: 319-324.
57. WELSHONS, W. J., and H. J. WELSHONS, 1985 Suppression of the facet-stawberry position effect in Drosophila by lesions adjacent to Notch Genetics 110: 465-477.
58. WELSHONS, W. J., and H. J. WELSHONS, 1986 Enhancement and suppression of a euchromatic position effect at Notch in Drosophila. Genetics 113: 337-354.
59. WHARTON, K. A., K. M. JOHANSEN, T. XU and S. ARTAVANIS-TSAKONAS, 1985 Nucleotide sequence from the neurogenic locus Notch implies a gene product that shares homology with proteins containing EGF-like repeats. Cell 43: 567-581.
60. WIJGERDE, M., F. GROSVELD and P. FRASER, 1995 Transcription complex stability and chromatin dynamics in vivo. Nature 377: 209-213.
61. WORCEL, A., G. GARGIULO, B. JESSEE, A. UDVARDY, C. LOUIS et al., 1983 Chromatin fine structure of the histone gene complex of Drosophila melanogaster. Nucleic Acids Res. 11: 421-439.
62. ZHAO, K., C. M. HART and U. K. LAEMMLI, 1995 Visualization of chromosomal domains with chromatin domain boundary element-associated factor BEAF-32. Cell 81: 879-889.
63. ZHOU, J., S. BAROLO, P. SZYMANSKI and M. LEVINE, 1996 The Fab-7 element of the bithorax complex attenuates enhancer-promoter interactions in the Drosophila embryo. Genes Dev. 10: 3195-3201.