The development of a new approach for establishing a core collection using multivariate analyses with tulip as case

Genetic Resources and Crop Evolution

Volumn 47, Issue 4, 2000, Pages 403-416

  Van Raamsdonk, L W D ^a   Wijnker, J ^b  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b Bulb Research Center   (Netherlands)

Author keywords

Cluster analysis; Core collection; Information index; Principal component analysis; Tulipa; Validation

Indexed keywords

EID: 0033891406     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008777422034     Document Type: Article

References (30)

1. Ajmone Marsan, P., P. Catiglioni, F. Fusari, M. Kuiper & M. Motto, 1998. Genetic diversity and its relationship to hybrid performance in maize as revealed by RFLP and AFLP markers. Theor. Appl. Genet. 96: 219-227.
2. Aldrich, P.R. & J. Doebley, 1992. Restriction fragment variation in the nuclear and chloroplast genomes of cultivated and wild Sorghum bicolor. Theor. Appl. Genet. 85: 293-302.
3. Basigalup, D.H. D.K. Barnes & R.E. Stucker, 1995. Development of a core collection for perennial Medicago plant introductions. Crop Sci. 35: 1163-1168.
4. Brown, A.H.D., 1989. Core collections: a practical approach to genetic resources management. Genome 31: 818-824.
5. Casler, M.D., 1995. Patterns of variation in a collection of perennial ryegrass accessions. Crop Sci. 35: 1169-1177.
6. Charmet, G. & F. Balfourier, 1995. The use of geostatistics for sampling a core collection of perennial ryegrass populations. Genet. Resour. Crop Evol. 42: 303-309.
7. Crossa, J., I.H. DeLacy & S. Taba, 1995. The use of multivariate methods in developing a core collection. In: T. Hodgkin, A.H.D. Brown, Hintum, Th.J.L. van & E.A.V. Morales (Eds), Core Collections of Plant Genetic Resources, pp. 77-92. International Plant Genetic Resources Institute (IPGRI).
8. Diwan, N., M.S. McIntosh & G.R. Bauchan, 1995. Methods of developing a core collection of annual Medicago species. Theor. Appl. Genet. 90: 755-761.
9. Doebley, J., 1990. Molecular evidence and the evolution of maize. Econ. Bot. 44 (Suppl.): 6-27.
10. Eijk, J.P. van & W. Eikelboom, 1989. Evaluatie van het veredelingsonderzoek naar resistentie tegen zuur (Fusarium oxysporum) in tulp. Gewasbescherming 20: 81-88.
11. Galwey, N.W., 1995. Verifying and validating the representativeness of a core collection. In: T. Hodgkin, A.H.D. Brown, Th.J.L. van Hintum, & E.A.V. Morales (Eds), Core Collections of Plant Genetic Resources, pp. 187-198. International Plant Genetic Resources Institute (IPGRI).
12. Grauke, L.J. T.E. Thompson & R.D. Marquard, 1995. Evaluation of pecan [Carya illinoinensis (Wangenh.) K. Koch] germplasm collections and designation of a core subset. HortScience 30: 950-954.
13. Hennink, S. & A.C. Zeven, 1991. The interpretation of Nei and Shannon-Weaver within population variation indices. Euphytica 51: 235-240.
14. Herrero, R. M.J. Asins, J.A. Pina, E.A. Carbonell & L. Navarro, 1996. Genetic diversity in the orange subfamily Aurantioideae. II. Genetic relationships among genera and species. Theor. Appl. Genet. 93: 1327-1334.
15. Hintum, Th. J.L. van, 1995. Hierarchical approaches to the analysis of genetic diversity in crop plants. In: T. Hodgkin, A.H.D. Brown, Th.J.L. van Hintum, & E.A.V. Morales (Eds), Core Collections of Plant Genetic Resources, pp. 23-34. International Plant Genetic Resources Institute (IPGRI).
16. Hintum, Th.J.L. van, R. von Bothmer & D.L. Visser, 1995. Sampling strategies for composing a core collection of cultivated barley (Hordeum vulgare s.lat.) collected in China. Hereditas 122: 7-15.
17. Holbrook, C.C. & W.F. Anderson, 1995. Evaluation of a core collection to identify resistance to Late leafspot in peanut. Crop Sci. 35: 1700-1702.
18. Loos, B.P. & P.J.W. Van Duin, 1991. Establishing a core collection representing genetic variation in tulip. FAO/IBPGR Plant Genet. Resour. Newslett. 78/79: 11-12.
19. Noirot, M. S. Hamon & F. Anthony, 1996. The principal component scoring: a new method of constituting a core collection using quantitative data. Genet. Resour. Crop Evol. 43: 1-6.
20. Quiros, C.F. R. Ortega, L.W.D. van Raamsdonk, M. HerreraMontoya, P. Cisneros, E. Schmidt & S.B. Brush, 1992. Amplification of potato genetic resources in their center of diversity: the role of natural outcrossing and selection by the Andean farmer. Genet. Resour. Crop Evol. 39: 107-113.
21. Raamsdonk, L.W.D. van, 1988. IRISsys: system for Information Regrouping to Identify Structures, package for multivariate data analysis, release 3.1. CPRO-DLO, Wageningen.
22. Raamsdonk, L.W.D. van, 1993. Flower pigment composition in Tulipa. Genet. Resour. Crop Evol. 40: 49-54.
23. Raamsdonk, L.W.D. van & J. Heringa, 1987. Biosystematic studies on the umbellatum-angustifolium complex in the genus Ornithogalum L. (Liliaceae). III. Morphological analysis. Nord. J. Bot. 7: 631-637.
24. Raamsdonk, L.W.D. van & T. de Vries, 1996. Cultivar classification in Tulipa L. (Liliaceae). Acta Bot. Neerl. 45: 183-198.
25. Scheepen, J. van, 1996a. Classified list and international register of Tulip names. Royal General Bulbgrowers' Association, Hillegom.
26. Scheepen, J. van, 1996b. Cultivar groups in the genus Tulipa L. (Liliaceae). Acta Hort. 413: 137-143.
27. Sneath, P.H.A. & R.R. Sokal, 1973. Numerical Taxonomy. Freeman, San Francisco, CA.
28. Stuurman, J.R. (Ed.), 1987. Classified list and international register of Tulip names. Royal General Bulbgrowers' Association, Hillegom.
29. Tohme, J. P. Jones, S. Beebe & M. Iwanaga, 1995. The combined use of agroecological and characterisation data to establish the CIAT Phaseolus vulgaris core collection. In: T. Hodgkin, A.H.D. Brown, Th.J.L. van Hintum, & E.A.V. Morales (Eds), Core Collections of Plant Genetic Resources, pp. 95-107. International Plant Genetic Resources Institute (IPGRI).
30. Yonezawa, K. T. Nomura & H. Morishima, 1995. Sampling strategies for use in stratified germplasm collections. In: T. Hodgkin, A.H.D. Brown, Th.J.L. van Hintum,& E.A.V. Morales (Eds), Core Collections of Plant Genetic Resources, pp. 35-53. International Plant Genetic Resources Institute (IPGRI).