Dynamics of the expanding dna nucleoid released from a bacterial cell

Physica A: Statistical Mechanics and its Applications

Volumn 277, Issue 1, 2000, Pages 62-70

  Odijk, T ^a  

^a DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

Bacterial cell; DNA; Non linear diffusion; Nucleoid; Polymer; Supercoiling

Indexed keywords

BACTERIA; DIFFUSION; FRICTION; HYDRODYNAMICS; MATHEMATICAL MODELS; NONLINEAR EQUATIONS;

NUCLEOIDS; SUPERCOILING;

DNA;

EID: 0033879014     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-4371(99)00556-7     Document Type: Article

References (38)

1. Neidhardt F.C., Ingraham J.L., Schaechter M. Physiology of the Bacterial Cell. 1990;Sinauer Ass. Inc. Publ, Sunderland, MA.
2. Cayley S., Lewis B.A., Guttman H.J., Record M.T. Jr. J. Mol. Biol. 222:1991;281.
3. Record M.T. Jr., Courtenay E.S., Cayley D.S., Guttman H.J. Trends Biochem. Sci. 23:1998;143.
4. Woldringh C.L., Nanninga N. Nanninga N. Molecular Cytology of Escherichia coli. 1985;Academic Press, London.
5. Barenblatt G.I. Scaling Phenomena in Fluid Mechanics, Inaugural Lecture, University of Cambridge, 1993. 1994;Cambridge University Press, Cambridge.
6. Zimmerman S.B. Biochem Biophys. Acta. 1216:1993;175.
7. Lewis I.M. Bacteriol. Rev. 5:1941;181.
8. Kellenberger E. Adolph K.W. Chromosomes: Eukaryotic. Prokaryotic and Viral; Vol III. 1990;CRC Press, Boca Raton, FL.
9. Robinow C., Kellenberger E. Microbiol. Rev. 58:1994;211.
10. Woldringh C.L., Odijk T. Charlebois R.L. Organization of the Prokaryotic Genome. 1999;American Society of Microbiology Press, Washington, DC.
11. Valkenburg J.A.C., Woldringh C.L. J. Bacteriology. 160:1984;1151.
12. Odijk T. Biophys. Chem. 73:1998;23.
13. Worcel A., Burgi E. J. Mol. Biol. 71:1972;127.
14. Kavenoff R., Bowen B.C. Chromosoma. 59:1976;89.
15. Bendich A.J. Protoplasma. 160:1991;121.
16. Hinnebusch B.J., Bendich A.J. J. Bacteriology. 179:1997;2228.
17. Murphy L.D., Zimmerman S.B. J. Struct. Biol. 119:1997;321.
18. Murphy L.D., Zimmerman S.B. J. Struct. Biol. 119:1997;336.
19. Sinden R.R., Pettijohn D.E. Proc. Nat. Acad. Sci. USA. 78:1981;224.
20. Marko J.F., Siggia E.D. Phys. Rev. E. 52:1995;2912.
21. Teraoka I., Mori Y., Ookubo N., Hayakawa R. Phys. Rev. Lett. 55:1985;2712.
22. Magda J.J., Davis H.T., Tirrell M. J. Chem. Phys. 85:1986;6674.
23. Doi M., Shimada T. K. Okano. 88:1988;4070.
24. Odijk T. Macromolecules. 19:1986;2073.
25. Muthukumar M., Edwards S.F. Macromolecules. 16:1983;1475.
26. Ya.B. Zel'dovich, in: Collection of Papers Dedicated to the 70th Birthday of A.F. Ioffe, Izd. Akad. Nauk. SSSR, Moscow, 1950.
27. Barenblatt G.I. Prikl. Mat. Mekh. 16:1952;67.
28. Barenblatt G.I. Similarity, Self-Similarity and Intermediate Asymptotics. 1979;Consultants Bureau, New York.
29. Sedov L.I. Appl. Math. Mech. 10:1946;241.
30. Taylor G.I. Proc. Roy. Soc. A. 201:1950;159.
31. Sachdev P.L. Nonlinear Diffusive Waves. 1987;Cambridge University Press, Cambridge.
32. Odijk T. J. Chem. Phys. 105:1996;1270.
33. Marko J.F. Physica A. 244:1997;263.
34. Wedemann G., Münkel C., Schöppe G., Langowski J. Phys. Rev. E. 58:1998;3537.
35. Ubbink J., Odijk T. Biophys. J. 76:1999;2502.
36. Vologodskii A.V., Cozzarelli N.R. Biopolymers. 35:1995;289.
37. Hammermann M., Brun N., Klenin K.V., May R., Toth K., Langowski J. Biophys. J. 75:1998;3057.
38. Marcati J.P. Comm. Partial Differential Equations. 13:1988;321.