SCOPUS 정보 검색 플랫폼

Genome Research

Volumn 10, Issue 7, 2000, Pages 1011-1019

Distribution of hammerhead and hammerhead-like RNA motifs through the GenBank

(5) Ferbeyre, Gerardo a Bourdeau, Véronique b Pageau, Marie b Miramontes, Pedro c Cedergren, Robert b

a Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor (United States)

b UNIVERSITÉ DE MONTRÉAL (Canada)

c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME P450 REDUCTASE; MESSENGER RNA; RIBOZYME; RNA; SATELLITE RNA;

ARTICLE; CAPRINE ARTHRITIS ENCEPHALITIS VIRUS; CONTROLLED STUDY; CPG ISLAND; DATA BASE; HAMSTER; HEPATITIS E VIRUS; LUTEOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT VIRUS; PRIORITY JOURNAL; RANDOMIZATION; RAT; RNA SEQUENCE; SPINACH; VERTEBRATE;

AMINO ACID MOTIFS; ANIMALS; BACTERIAL PROTEINS; DATABASES, FACTUAL; EXPRESSED SEQUENCE TAGS; FUNGAL PROTEINS; GENE FREQUENCY; HUMANS; HYDROLYSIS; ISOENZYMES; MUTATION; NUCLEIC ACID CONFORMATION; PLANT PROTEINS; RNA, CATALYTIC; RODENTIA; SEQUENCE TAGGED SITES;

ANIMALIA; CAPRA; CAPRINE ARTHRITIS-ENCEPHALITIS VIRUS; CARROT RED LEAF VIRUS; CRICETINAE; DAUCUS CAROTA; ELM MOTTLE VIRUS; HEPATITIS E VIRUS; LUTEOVIRUS; RNA VIRUSES; SALAMANDRIDAE; SPINACH LATENT VIRUS; SPINACIA OLERACEA; ULMUS; VERTEBRATA; VIROIDS;

EID: 0033861030 PISSN: 10889051 EISSN: None Source Type: Journal
DOI: 10.1101/gr.10.7.1011 Document Type: Article

Times cited : (29)

References (26)

1
- 2642652233
- In vitro and in vivo self-cleavage of a viroid RNA with a mutation in the hammerhead catalytic pocket
- (1998) Nucleic Acids Res. , vol.26 , pp. 1877-1883
- Ambros, S.¹ Flores, R.²

2
- 0032900994
- GenBank
- (1999) Nucleic Acids Res. , vol.27 , pp. 12-17
- Benson, D.A.¹ Boguski, M.S.² Lipman, D.J.³ Ostell, J.⁴ Ouellette, B.F.⁵ Rapp, B.A.⁶ Wheeler, D.L.⁷

3
- 0030939002
- The structure, function and application of the hammerhead ribozyme
- (1997) Eur. J. Biochem. , vol.245 , pp. 1-16
- Birikh, K.R.¹ Heaton, P.A.² Eckstein, F.³

4
- 0033570909
- The distribution of RNA motifs in natural sequences
- (1999) Nucleic Acids Res. , vol.27 , pp. 4457-4467
- Bourdeau, V.¹ Ferbeyre, G.² Pageau, M.³ Paquin, B.⁴ Cedergren, R.⁵

5
- 0027756203
- The hammerhead RNA domain, a model ribozyme
- (1993) Biochim. Biophys. Acta , vol.1216 , pp. 345-359
- Bratty, J.¹ Chartrand, P.² Ferbeyre, G.³ Cedergren, R.⁴

6
- 0030011110
- Compilation and analysis of viroid and viroid-like RNA sequences
- (1996) Nucleic Acids Res. , vol.24 , pp. 1793-1798
- Bussiere, F.¹ Lafontaine, D.² Perreault, J.P.³

7
- 0023652361
- Self-cleaving transcripts of satellite DNA from the newt
- (1987) Cell , vol.48 , pp. 535-543
- Epstein, L.M.¹ Gall, J.G.²

8
- 0031806709
- Schistosome satellite DNA encodes active hammerhead ribozymes
- (1998) Mol. Cell. Biol. , vol.18 , pp. 3880-3888
- Ferbeyre, G.¹ Smith, J.M.² Cedergren, R.³

9
- 0027657182
- Statistics of RNA secondary structures
- (1993) Biopolymers , vol.33 , pp. 1389-1404
- Fontana, W.¹ Konings, D.A.² Stadler, P.F.³ Schuster, P.⁴

10
- 0023663396
- Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites
- (1987) Cell , vol.49 , pp. 211-220
- Forster, A.C.¹ Symons, R.H.²

11
- 0025095711
- Pattern searching/alignment with RNA primary and secondary structures: An effective descriptor for tRNA
- (1990) Comput. Appl. Biosci. , vol.6 , pp. 325-331
- Gautheret, D.¹ Major, F.² Cedergren, R.³

12
- 0026771509
- Numbering system for the hammerhead
- (1992) Nucleic Acids Res. , vol.20 , pp. 3252
- Hertel, K.J.¹ Pardi, A.² Uhlenbeck, O.C.³ Koizumi, M.⁴ Ohtsuka, E.⁵ Uesugi, S.⁶ Cedergren, R.⁷ Eckstein, F.⁸ Gerlach W.L. Hodgson, R.⁹

13
- 0028337602
- A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertion
- (1994) Nat. Genet. , vol.7 , pp. 143-148
- Holmes, S.E.¹ Dombroski, B.A.² Krebs, C.M.³ Boehm, C.D.⁴ Kazazian H.H., Jr.⁵

14
- 0030923586
- Compositional differences within and between eukaryotic genomes
- (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 10227-10232
- Karlin, S.¹ Mrazek, J.²

15
- 0032530198
- Sequence specificity of the hammerhead ribozyme revisited; the NHH rule
- (1998) Nucleic Acids Res. , vol.26 , pp. 4116-4120
- Kore, A.R.¹ Vaish, N.K.² Kutzke, U.³ Eckstein, F.⁴

16
- 0028258377
- An RNA pattern matching program with enhanced performance and portability
- (1994) Comput. Appl. Biosci. , vol.10 , pp. 211-212
- Laferriere, A.¹ Gautheret, D.² Cedergren, R.³

17
- 0344258418
- The viroid and viroid-like RNA database
- (1999) Nucleic Acids Res. , vol.27 , pp. 186-187
- Lafontaine, D.A.¹ Deschenes, P.² Bussiere, F.³ Poisson, V.⁴ Perreault, J.P.⁵

18
- 0031145758
- A random number generator based on the combination of four LCGs
- (1997) Math. Comput. Simulation , vol.44 , pp. 99-107
- L'Ecuyer, P.¹ Andres, T.H.²

19
- 0025931766
- Newt satellite 2 transcripts self-cleave by using an extended hammerhead structure
- (1991) Mol. Cell. Biol. , vol.11 , pp. 6109-6115
- Pabon-Pena, L.M.¹ Zhang, Y.² Epstein, L.M.³

20
- 0031105866
- Generic properties of combinatory maps: Neutral networks of RNA secondary structures
- (1997) Bull. Math. Biol. , vol.59 , pp. 339-397
- Reidys, C.¹ Stadler P.F. Schuster, P.²

21
- 0025695458
- Sequence requirements of the hammerhead RNA self-cleavage reaction
- (1990) Biochemistry , vol.29 , pp. 10695-10702
- Ruffner, D.E.¹ Stormo, G.D.² Uhlenbeck, O.C.³

22
- 0029073091
- The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
- (1995) Cell , vol.81 , pp. 991-1002
- Scott, W.G.¹ Finch, J.T.² Klug, A.³

23
- 0028905538
- Generality of the NUX rule: Kinetic analysis of the results of systematic mutations in the trinucleotide at the cleavage site of hammerhead ribozymes Biochemistry.
- (1995) , vol.34 , pp. 3649-3654
- Shimayama, T.¹ Nishikawa, S.² Taira, K.³

24
- 0026651086
- Small catalytic RNAs
- (1992) Annu Rev. Biochem. , vol.61 , pp. 641-671
- Symons, R.¹

25
- 0030858327
- Plant pathogenic RNAs and RNA catalysis
- (1997) Nucleic Acid Res. , vol.25 , pp. 2683-2689
- Symons, R.¹

26
- 0029941783
- Cloning and characterization of extended hammerheads from a diverse set of caudate amphibians
- (1996) Gene , vol.172 , pp. 183-190
- Zhang, Y.¹ Epstein, L.M.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.