HIV-1 subtype H near-full length genome reference strains and analysis of subtype-H-containing inter-subtype recombinants

AIDS

Volumn 14, Issue 11, 2000, Pages 1533-1543

  Janssens, Wouter ^a,b   Laukkanen, Tiina ^c   Salminen, Mika O ^c   Carr, Jean K ^d   Van Der Auwera, Gert ^a   Heyndrickx, Leo ^a   Van Der Groen, Guido ^a   McCutchan, Francine E ^d  

^a INSTITUTE OF TROPICAL MEDICINE   (Belgium)

^b DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^c NATIONAL PUBLIC HEALTH INSTITUTE   (Finland)

^d HENRY M JACKSON FOUNDATION FOR THE ADVANCEMENT OF MILITARY MEDICINE   (United States)

Author keywords

Genetic diversity; Recombination; Subtypes

Indexed keywords

ARTICLE; CONTROLLED STUDY; ENVELOPE GENE; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIRUS CHARACTERIZATION; VIRUS GENOME; VIRUS RECOMBINANT; VIRUS STRAIN;

BASE SEQUENCE; DNA, VIRAL; GENES, ENV; GENES, GAG; GENOME, VIRAL; HIV INFECTIONS; HIV-1; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINATION, GENETIC; REFERENCE STANDARDS;

EID: 0033821065     PISSN: 02699370     EISSN: None     Source Type: Journal    
DOI: 10.1097/00002030-200007280-00009     Document Type: Article

References (32)

1. Isolation and envelope sequence of a highly divergent HIV-1 isolate: Definition of a new HIV-1 group
2. Identification of a new human immunodeficiency virus type 1 distinct from group M and group O
3. The puzzle of HIV-1 subtypes in Africa
4. The emerging genetic diversity of HIV-The importance of global surveillance for diagnostics, research, and prevention
5. Global distribution of human immunodeficiency virus-1 clades
6. A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1
7. Reference sequences representing the principal genetic diversity of HIV-1 in the pandemic
8. Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes
9. Genetic and phylogenetic analysis of env subtypes G and H in central Africa
10. Genotypic subtypes of HIV-1 in Cameroon
11. Epidemiological and molecular characteristics of HIV infection in Gabon (1986-1994)
12. Genetic diversity of the HIV-1 envelope glycoprotein from human immunodeficiency virus type 1 isolates of African origin
13. Genetic heterogeneity of HIV type 1 in Russia: Identification of H variants and relationship with epidemiological data
14. HIV type 1 diversity in Northern Paris, France
15. gag and env sequences of an A/G/H recombinant from a Zairian HIV type 1 isolate
16. Most HIV-1 genetic subtypes have entered Sweden
17. Longstanding presence in Belgians of multiple non-B HIV-1 subtypes
18. HIV-1 C2V3 env diversity among Belgian individuals
19. Various types of HIV mixed infections in Cameroon
20. Phylogenetic analysis of the env gene of HIV-1 isolates taking into account individual nucleotide substitution rates
21. Recovery of virtually full-length HIV-1 provirus of diverse subtypes from primary virus cultures using the polymerase chain reaction
22. Virtually full-length sequences of HIV-1 subtype J reference strains
23. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
24. Updated proposal of reference sequences of HIV-1 genetic subtypes
25. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
26. DCSE, an interactive tool for sequence alignment and secondary structure research
27. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
28. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic trees
29. Genetic relationships determined by a DNA Heteroduplex Mobility Assay: Analysis of HIV-1 genes