Origin and evolution of eukaryotic chaperonins: Phylogenetic evidence for ancient duplications in CCT genes

Molecular Biology and Evolution

Volumn 17, Issue 10, 2000, Pages 1456-1466

  Archibald, John M ^a   Logsdon Jr , John M ^a,b   Doolittle, W Ford ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

^b EMORY UNIVERSITY   (United States)

Author keywords

Chaperonins; Diplomonads; Eukaryotic evolution; Gene duplication; Parabasalids; Phylogeny

Indexed keywords

CHAPERONIN;

ARCHAEBACTERIUM; ARTICLE; BACTERIUM; CELL LINEAGE; EUKARYOTE; EVOLUTION; GENE DUPLICATION; GENE SEQUENCE; GENETIC CODE; GIARDIA LAMBLIA; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; PHYLOGENY; TRICHOMONAS VAGINALIS; YEAST;

ARCHAEA; ARCHEZOA; BACTERIA (MICROORGANISMS); DIPLOMONADIDA; EUKARYOTA; GIARDIA; GIARDIA INTESTINALIS; MAMMALIA; PARABASALIDEA; PROTISTA; TRICHOMONAS; TRICHOMONAS VAGINALIS;

EID: 0033800261     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026246     Document Type: Article

References (65)

1. MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
2. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
3. Recurrent paralogy in the evolution of archaeal chaperonins
4. The proteasome: Paradigm of a self-compartmentalizing protease
5. The crystal structure of the bacterial chaperonin GroEL at 2.8 Å
6. The Hsp70 and Hsp60 chaperone machines
7. Eukaryotes with no mitochondria
8. Direct evidence for secondary loss of mitochondria in Entamoeba histolytica
9. Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
10. Evidence of independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases
11. Chaperonin-mediated folding in the eukaryotic cytosol proceeds through rounds of release of native and nonnative forms
12. Formation of the VHL-elongin BC tumor suppressor complex is mediated by the chaperonin TRiC
13. Function in protein folding of TRiC, a cytosolic ring complex containing TCP-1 and structurally related subunits
14. The chaperone cofactor Hop/p60 interacts with the cytosolic chaperonin-containing TCP-1 and affects its nucleotide exchange and protein folding activities
15. A novel protein complex promoting formation of functional alpha-and gamma-tubulin
16. Evidence for loss of mitochondria in microsporidia from a mitochondrial-type HSP70 in Nosema locustae
17. Structure of 20S proteasome from yeast at 2.4 Å resolution
18. Group II chaperonins: New TRiC(k)s and turns of a protein folding machine
19. Protein phylogeny gives a robust estimation for early divergences of eukaryotes: Phylogenetic place of a mitochondria-lacking protozoan
20. A mitochondrial Hsp70 orthologue in Vairimorpha necatrix: Molecular evidence that microsporidia once contained mitochondria
21. Microsporidia are related to Fungi: Evidence from the largest subunit of RNA polymerase II and other proteins
22. The thermosome: Chaperonin with a built-in lid
23. Identification of in vivo substrates of the chaperonin GroEL
24. Protein phylogeny of translation elongation factor EF-1 alpha suggests microsporidians are extremely ancient eukaryotes
25. Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family
26. Cystosolic chaperonin subunits have a conserved ATPase domain but diverged polypeptide-binding domains
27. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
28. The thermosome: Archetype of group II chaperonins
29. Structure of the substrate binding domain of the thermosome, an archaeal group II chaperonin
30. Identification of six Tcp-1-related genes encoding divergent subunits of the TCP-1-containing chaperonin
31. Tissue-specific subunit of the mouse cytosolic chaperonin-containing TCP-1
32. The chaperonin containing t-complex polypeptide 1 (TCP-1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol
33. The eighth Cct gene, Cctq, encoding the theta subunit of the cytosolic chaperonin containing TCP-1
34. Small subunit ribosomal RNA of Hexamita inflata and the quest for the first branch in the eukaryotic tree
35. T-complex polypeptide-1 is a subunit of a heteromeric particle in the eukaryotic cytosol
36. Analysis of mutationally altered forms of the Cct6 subunit of the chaperonin from Saccharomyces cerevisiae
37. The unique hetero-oligomeric nature of the subunits in the catalytic cooperativity of the yeast Cct chaperonin complex
38. The chaperonin containing TCP-1 (CCT) displays a single-ring mediated disassembly and reassembly cycle
39. Elucidation of the subunit orientation in CCT (chaperonin containing TCP1) from the subunit composition of CCT micro-complexes
40. Eukaryotic type II chaperonin CCT interacts with actin through specific subunits
41. 3D reconstruction of the ATP-bound form of CCT reveals the asymmetric folding conformation of a type II chaperonin
42. The molecular chaperone TF55. Assessment of symmetry
43. Cytoplasmic chaperonin containing TCP-1: Structural and functional characterization
44. A novel ATPase complex selectively accumulated upon heat shock is a major cellular component of thermophilic archaebacteria
45. Structure of a molecular chaperone from a thermophilic archaebacterium
46. Chaperonins
47. Reconstructing early events in eukaryotic evolution
48. A possible mitochondrial gene in the early-branching amito-chondriate protist Trichomonas vaginalis
49. A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria
50. Compartmentation of protein folding in vivo: Sequestration of non-native polypeptide by the chaperonin-GimC system
51. Structure and function in GroEL-mediated protein folding
52. Sequence survey of the Giardia lamblia genome
53. Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from Giardia lamblia
54. Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II
55. The Cct eukaryotic chaperonin subunits of Saccharomyces cerevisiae and other yeasts
56. A molecular chaperone from a thermophilic archaebacterium is related to the eukaryotic protein t-complex polypeptide-1
57. Prefoldin, a chaperone that delivers unfolded proteins to cytosolic chaperonin
58. Primary structure of the thermosome from Thermoplasma acidophilum
59. Structure and function of chaperonins in archaebacteria and eukaryotic cytosol
60. The structure, function, and genetics of the chaperonin containing TCP-1 (CCT) in eukaryotic cytosol
61. Molecular evidence for an ancient duplication of the entire yeast genome
62. Maturation of human cyclin E requires the function of eukaryotic chaperonin CCT