Plant cell and viral helicases: Essential enzymes for nucleic acid transactions

Critical Reviews in Plant Sciences

Volumn 19, Issue 5, 2000, Pages 449-478

  Tuteja, Narendra ^a,b  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

^b UNIVERSITY OF SOUTHERN MISSISSIPPI   (United States)

Author keywords

Chloroplast; DEAD DEAH box protein; DNA helicase; DNA dependent adenosine triphosphatase; Helicase motifs; Pea; Plant helicase; Plant virus helicase; Replication; RNA helicase; Translation initiation; Unwinding enzyme

Indexed keywords

EUKARYOTA; PISUM SATIVUM; PROKARYOTA; VIRIDIPLANTAE;

EID: 0033791381     PISSN: 07352689     EISSN: None     Source Type: Journal    
DOI: 10.1080/07352689.2000.10131825     Document Type: Review

References (162)

1. Enzymatic unwinding of DNA. II. Chain separation by an ATP dependent DNA unwinding
2. The ATP-dependent interaction of eukaryotic initiation factors with mRNA
3. Crystal structure of the RNA-binding domain from transcription termination factor rho
4. The DEAD-box RNA helicase family in Arabidopsis thaliana
5. Structure, organisation and putative function of the genes identified within a 23.9-kb fragment from Arabidopsis thaliana chromosome IV
6. Characterization and crystallization of the helicase domain of bacteriophage T7 gene 4 protein
7. Single-turnover kinetics of helicase-catalyzed DNA unwinding monitored continuously by fluorescence energy transfer
8. Developmental and cell-cycle regulation of Alfalfa nucMs1, a plant homolog of the yeast Nsr1 and mammalian nucleolin
9. DNA helicases
10. A pollen-specific DEAD-box protein related to translation initiation factor eIF-4A from tobacco
11. Continuous protein synthesis is required to maintain the probability of entry into S-phase
12. Regulation of p68 RNA helicase by Calmodulin and protein kinase C
13. Revised nomenclature for eukaryotic NA polymerases
14. Partial purification and characterization of DNA helicase from chloroplast of Glycine max
15. Crystal structure of RNA helicase from genotype 1b hepatitis C virus
16. The isolation and characterization of a RNA helicase from nuclear extracts of HeLa cells
17. Calcium/calmodulin inhibition of basic-helix-loop-helix transcription factor domain
18. Simian virus 40 T antigen double haxamer assembles around the DNA at the replication origin
19. Domain structure of the simian virus 40 core origin of replication
20. RNA helicase activity of Semliki forest virus replication protein NSP2
21. RNA duplex unwinding activity of alfalfa mosaic virus RNA-dependent RNA polymerase
22. Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication
23. Unwinding of duplex DNA from the SV40 origin of replication by T antigen
24. Characterization of NTPase, NA-binding and RNA-helicase activities of the cytoplasmic inclusion protein of tamarillo mosaic polyvirus
25. The Bloom's syndrome gene product is homologus to RecQ helicase
26. Werner syndrome: Entering the helicase era
27. The helicase domain of the TMV replicase proteins induces the N-mediated defence response in tobacco
28. RNA helicase activity of the plum pox polyvirus CI protein expressed in Escherichia coli. Mapping of an RNA binding domain
29. Characterization of a new RNA helicase from nuclear extracts of HeLa cells which translocates in the 5' to 3' direction
30. mRNA can be stabilized by DEAD-box proteins
31. Xeroderma pigmentosum, cockayne's syndrome, helicase and DNA repair: What's the relationship?
32. The three faces of the WS helicase
33. ATP binding site of adenylate kinase: Mechanistic implications of its homology with ras-encoded p21, f1-ATPase, and other nucleotide binding proteins
34. RNA helicases: Modulators of RNA structure
35. Protein controlling the helical structure of DNA
36. The unwinding of duplex regions in DNA by the simian virus 40 large tumor antigen-associated DNA helicase activity
37. Viral proteins containing the purine NTP-binding sequence pattern
38. Helicases: Amino acid sequence comparisons and structure-function relationships
39. A conserved NTP-motif in putative helicases
40. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression DNA and RNA genomes
41. A new super-family of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses
42. RNA-stimulated ATPase and RNA helicase activities and RNA binding domain of hepatitis G virus nonstructural protein 3
43. Spliceosome assembly: The unwinding role of DEAD-box proteins
44. Geminivirus: Models for plant DNA replication, transcription and cell cycle regulation
45. Localization of functional regions of the cucumber mosaic virus RNA replicates using monoclonal and polyclonal antibodies
46. Plastid and nuclear DNA synthesis are not coupled in suspension cells of N. tobacum
47. Cooperative interactions of nucleotide ligands are linked to oligomerization and DNA binding in bacteriophage T7 gene 4 helicases
48. RNA helicase activity associated with the human p68 protein
49. DNA unwinding protein from meiotic cells of Lilium
50. Nuclear protein p68 is an RNA-dependent ATPase
51. p68 RNA helicase: Identification of nucleolar form and cloning of related genes containing a conserved intron in yeasts
52. A DNA helicase activity is associated with an MCM4, -6 and -7 protein complex
53. Structure and expression of a cDNA encoding an RNA helicase-like protein in tobacco
54. Co-localization of cytokinins with proteins related to cell proliferation in developing somatic embryos of Dactylis glomerata L
55. Translation initiation factors that function as RNA helicases from mammals, plants, and yeast
56. Virus-encoded RNA helicases
57. Identification of the domain required for direct interaction of the helicase-like and polymerase-like RNA replication proteins of borme mosaic virus
58. The role of MCM proteins in the cell cycle control of genome duplication
59. Similarities in RNA helicases
60. Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences
61. DNA helicases
62. Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP
63. Analysis of the role of Brome mosaic virus 1a protein domains in RNA replication, using linker isolqion insertion mutagenesis
64. Crystal structure of the kinesin motor domain reveals a structural similarity to myosin
65. The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila
66. Homologous polyvirus and flavivirus proteins belonging to a superfamily of helicase-like proteins
67. Novel catalytic activity associated with positive-strand RNA virus infection: Nucleic acid-stimulated ATPase activity of the plum pox potyvirus helicase like protein
68. High-level expression in male germ cells of murine p68 RNA helicase mRNA
69. p72: A human nuclear DEAD-box protein highly related to p68
70. Bromoviruses
71. SV40 large T shares an antigenic determinant with a cellular protein of molecular weight 68,000
72. RNA helicases: A novel activity associated with a protein encoded by a positive strand RNA virus
73. ATPase activities of wheat germ initiation factors 4A, 4B and 4F
74. Human RNA helicase A is homologous to the maleless protein of Drosophila
75. A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3' to 5' direction
76. RNA helicase A is essential for normal gastrulation
77. Three distinct ribonucleoproteins from tobacco chloroplasts; each contains a unique amino terminal acidic domain and two ribonucleoprotein consensus motifs
78. Birth of the DEAD-box
79. Escherichia coli DNA helicases: Mechanism of DNA unwinding
80. Helicase catalyzed DNA unwinding
81. Mechanisms of helicase-catalysed DNA unwinding
82. Staying on track; common features of DNA helicases and microtubule motors
83. RRH75, a new nucleus-localized member of the DEAD-box protein family from higher plants
84. Regulation of the cell cycle by calcium and clamodulin
85. Protein family of RNA helicases
86. The helC gene encodes a putative DEAD-box RNA helicase required for development in Dictyostelium discoideum
87. ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication
88. DNA helicases: Enzymes with essential roles in all aspects of DNA metabolism
89. Components of the nucleolar processing complex (pre-rRNA, fibrillarin and nucleolin) colocalize during mitosis and are incorporated to daughter cell nucleoli
90. Localization of replication origins in pea chloroplast DNA
91. Sequences for two cDNAs encoding Arabidopsis thaliana eukaryotic protein synthesis initiation factor 4A
92. Overview of the yeast genome
93. Mismatch repair, genetic stability and cancer
94. A Drosphila model for Xeroderma pigmentosum and cockayne's syndrome: Haywire encodes the fly homolog of ERCC3, a human excision repair gene
95. Characterization of a DEAD-box ATPase/RNA helicase protein of Arabidopsis thaliana
96. Biochemical and genetic analysis of the interaction between the helicase-like and polymerase-like proteins of the brome mosaic virus
97. Functional domains of a geminivirus replication protein
98. Divergent genes for translation initiation factor eIF-4A are coordinately expressed in tobacco
99. Characterization of the tobacco eIF-4A gene family
100. RNA helicase activity of Escherichia coli SecA protein
101. Three domains in the simian virus 40 core origin orchestrate the binding, melting and DNA helicase activity of T antigen
102. Mutational analysis of a DEAD-box RNA helicase: The mammalian translation initiation factor eIF-4A
103. The HRIGRXXR region of the DEAD-box RNA helicase eukaryotic translation factor 4A is required for RNA binding and ATP hydrolysis
104. Dominant negative mutants of mammalian translation initiation eIF-4A define a critical role for eIF-4F in cap-dependent and cap-independent initiation of translation
105. A DEAD-box RNA helicase in the Escherichia coli RNA degradosom
106. ATP-dependent unwinding of messenger RNA structure by eukaryotic initiation factors
107. Processivity of the DNA helicase activity of Escherichia coli recBCD enzyme
108. Bidirectional RNA helicase activity of eukaryotic translation initiation factors 4A and 4F
109. Escherichia coli helicase II (UvrD) protein initiates DNA unwinding at nicks and blunt ends
110. cDNA cloning and characterization of a maize homologue of the MCM proteins required for the initiation of DNA replication
111. Mechanisms of DNA excision repair
112. Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase Dna B and its loading partner Dna C
113. DNA repair helicase: A component of BTF2 (TFIIM) basic transcription factor
114. RNA unwinding activity of SV40 large T antigen
115. D-E-A-D protein family of putative RNA helicases
116. Molecular mechanism of transcription-repair coupling
117. Bovine papilloma virus (BPV)-encoded E1 protein contains multiple activities required for BPV DNA replication
118. Vaccinia virus RNA helicase; an essential enzyme related to the DE-H family of RNA-dependent NTPases
119. RNA helicase related genes of Plasmodium falciparum and Plasmodium cynomolgi
120. Gene trap tagging of PROLIFERA, an essential MCM 2-3-5-like gene in Arabidopsis
121. Identification of cDNA clones for rice homologs of the human immunodeficiency virus-I tat binding protein and subunit 4 of human 26S protease (proteasome)
122. DNA helicase activity in Werner's syndrome gene product synthesized in a baculovirus system
123. Crystal structure of a DEXX box DNA helicase
124. The human Rad 54 recombinatorial DNA repair protein is a double-stranded DNA-dependent ATPase
125. Replication of chloroplast DNA
126. Crystal structure of UvrB, a DNA helacse adapted for nucleotide excision repair
127. Eukaryotic DNA helicases: Essential enzymes for DNA transactions
128. Light regulation of the abundance of mRNA encoding a nucleolin-like protein localized in the nucleoli of pea nuclei
129. RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro
130. Unraveling DNA helicases from plant cells
131. Human DNA helicase IV is nucleolin and RNA helicase modulated by phosphorylation
132. Purification and properties of human DNA helicase VI
133. A chloroplast DNA helicase II from pea that prefers fork-like structures
134. Inhibition of pea chloroplast DNA helicase unwinding and ATPase activities by DNA-interacting ligands
135. Purification and characterization of a DNA helicase from pea chloroplasts that translocates in the 3' to 5' direction
136. Human DNA helicase V, a novel DNA unwinding enzyme from HeLa cells
137. DNA helicase IV from HeLa cells
138. DNA helicase III from HeLa cells: An enzyme that acts preferentially on partially unwound DNA duplexes
139. Molecular biology of chloroplast genome
140. DNA helicases: The long unwinding road
141. Nucleolin: A multifunctional major nucleolar phosphoprotein
142. Ku autoantigen: A multifunctional DNA-binding protein
143. Human DNA helicase II: A novel DNA unwinding enzyme identified as the Ku autoantigen
144. A DNA helicase from human cells
145. Crystal structures of complexes PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
146. Rok 1p is a putative RNA helicase required for rRNA processing
147. Helicases as nucleic acid unwinding machines
148. Distantly related sequence in the A- and B-subunits of ATP synthase, myosin, kinase and other ATP-requiring enzymes and a common nucleotide binding fold
149. Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription
150. The DEAD-box splicing factor Prp16 unwinds RNA duplexes in vitro
151. Alive with DEAD proteins
152. Hypoxia enhances phosphorylation of eukaryotic initiation factor 4A in maize root tips
153. A novel nucleic acid helicase gene identified by promoter trapping in Arabidopsis
154. DNA helicases: New breeds of translocating motors and molecular pumps
155. Simian virus 40 T-antigen DNA helicase is a hexamer which forms a binary complex during bidirectional unwinding from the viral origin of DNA replication
156. Branch migration of Holliday junctions: Identification of RecG protein as a junction-specific DNA helicase
157. The product of tobacco mosaic virus resistance gene N: Similarity to toll and the interleukin-1 receptor
158. Allosteric effects of nucleotide cofactors on Escherichia coli Rep helicase-DNA binding
159. Plant homologue of human excision repair gene ERCC1 points to conservation of DNA repair mechanisms
160. Enzyme catalyzed DNA unwinding: Studies on Escherichia coli rep protein
161. Molecular cloning of the gene encoding nuclear helicase II: A bovine homologue of human RNA helicase A and Drosophila Mle protein
162. Nuclear DNA helicase II unwinds both DNA and RNA