Physiological and phylogenetic diversity of the thermophilic spore-forming hydrocarbon-oxidizing bacteria from oil fields

Mikrobiologiya

Volumn 69, Issue 1, 2000, Pages 113-119

  Nazina, T H ^a   Tourova, T P ^a   Poltaraus, A B ^a   Novikova, E V ^a   Ivanova, A E ^a   Grigoryan, A A ^a   Lysenko, A M ^a   Belyaev, S S ^a  

^a RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

16s rrna; Bacillus; Hydrocarbon oxidizing bacteria; Oil fields; Phylogeny

Indexed keywords

HYDROCARBON; PETROLEUM; PRIMER DNA; RNA 16S;

ARTICLE; BACILLUS; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; NUCLEOTIDE SEQUENCE; OXIDATION REDUCTION REACTION; PHYLOGENY;

BACILLUS; BASE SEQUENCE; DNA PRIMERS; HYDROCARBONS; OXIDATION-REDUCTION; PETROLEUM; PHYLOGENY; RNA, RIBOSOMAL, 16S;

EID: 0033655453     PISSN: 00263656     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (22)

1. Beeder J., Nilscn R.K., Rasnes J.T., Tàrsvik T., Lien T. Archaeoglobus fulgidus isolated from hot 'North sea oil field' waters // Ami, Environ. Microfoiol. 1994. V, 60. No 4. P. 1227-1231.
2. Ravoy?( G., Magot M., Fardeau M. -L., PM BM.C., Prensier'G., E$an A.t Garcia J.-£., OlliwefB. tkermoîoga eli sp. nov., a novel thermophilic bacterium front, an African oil-producing well // Int. J. Syst. Bacteriol. 1995. V. 45. M 2. P. 308-314.
3. Nazina T.N., Ivanova A.E., Borzenkov I.A., Belyaev S.S., Ivanov M.V. Occurrence and geochemical activity of microorganisms in high-temperature water-flooded oil fields of Kazakhstan and Western Siberia // Geomicrobiol. J. 1995. V. 13. P. 181-192.
4. Claus D., Berkeley R.C.W. Genus Bacillus Cohn 1872 // Bergey's manual of systematic bacteriology. V. 2 / Eds Sneath P.A. et al. Baltimore: The Williams and Wilkins Co., 1986. P. 1105-1140.
5. Priest F.G., Goodfellow M., Todd C. Numerical classification of the genus Bacillus // J. Gen. Microbiol. 1988. V. 134. P. 1847-1882.
6. Ash C., Farrow A.E., Wallbanks S., Collins M.D. Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences //Lett. Appl. Microbiol. 1991. V. 13. P. 202-206.
7. Ash C., Priest F.G., Collins M.D. Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks, and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus // Antonie van Leeuvenhoek. 1993. V. 64. P. 253-260.
8. Rainey FA., Fritze D., Stackebrandt E. The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis // FEMS Microbiol. Lett. 1994. V. 115. P. 205-212.
9. Shida O., Takagi H., Kadowaki K., Komagata K. Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. // Int. J. Syst. Bacteriol. 1996. V. 46. P. 939-946.
10. Spring S., Ludwig W., Marquez M.C., Ventosa A., Schleifer K.-H. Halobacillus gen. nov., with description of Halobacillus litoralis sp. nov. and Halobacillus truperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. // Int. J. Syst. Bacteriol. 1996. V. 46. P. 49296.
11. Wisotzkey J.D., JurtshukP., Jr., Fox G.E., DeinhardG., Poralla K. Comparative sequence analysis on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. // Int. J. Syst. Bacteriol. 1992. V. 42. P. 263-269.
12. Heyndrickx M., Lebbe L., Kersters K., De Vos P., Forsyth G., Logan N.A. Virgibacillus: a new genus to accomodate Bacillus pantothenicus (Proom and Knight 1950). Emended description of Virgibacillus pantothenicus // Int. J. Syst. Bacteriol. 1998. V. 48. P. 99-106.
13. Marmur J. A procedure for the isolation DNA from microorganisms //J. Mol. Biol. 1961. V. 3. P. 208-218.
14. Owen R.J., Hill L.R., Lapage S.P. Determination of DNA base compositions from melting profiles in delute buffers // Biopolymers. 1969. V. 7. P. 503-516.
15. De Ley J., Cattoir H., Reynaerts A. The quantitative measurement of DNA hybridization from renaturation rates // Eur. J. Biochem. 1970. V. 12. P. 133-142.
16. Edwards U., Rogall T., Bloeker H., Ende M.D., Boeettge E.C. Isolation and direct complete nucleotide determination of entire genes, characterization of gene coding for 16SribosomalRNA//Nucl. Acids Res. 1989. V. 17. P. 7843-7853.
17. Larsen N., Olsen G.J., Majdak B.L., MeCaughey M.J., Overbeck R., Macke T.J., Marsh T.L., Woese C.R. The ribosomal database project // Nucl. Acids Res. 1992. V. 21. P. 3021-3023.
18. Van de Peer Y., De Wächter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment // Comput. Appl. Biosci. 1994. V. 10. P. 569-570.
19. Stackebrandt E., Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16 rRNA sequence analysis in the present species definition in bacteriology // Int. J. Syst. Bacteriol. 1994. V. 44. .N° 4. P. 846.