-
1
-
-
33751385215
-
A molecular dynamics study of lecithin monolayers
-
Ahlstrom, P., and H. J. C. Berendsen. 1993. A molecular dynamics study of lecithin monolayers. J. Phys. Chem. 97:13691-13702.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 13691-13702
-
-
Ahlstrom, P.1
Berendsen, H.J.C.2
-
2
-
-
0019886571
-
Direct determination by Raman scattering of the conformation of the choline group in phospholipid bilayers
-
Akutsu, H. 1981. Direct determination by Raman scattering of the conformation of the choline group in phospholipid bilayers. Biochemistry. 20:7359-7366.
-
(1981)
Biochemistry
, vol.20
, pp. 7359-7366
-
-
Akutsu, H.1
-
3
-
-
33847542889
-
Molecular dynamics simulations of model membranes
-
D. Chapman and P. I. Haris, editors. IOS Press, Amsterdam, The Netherlands
-
Belohorcova, K., and J. H. Davis. 1998. Molecular dynamics simulations of model membranes. In Biomembrane Structures, D. Chapman and P. I. Haris, editors. IOS Press, Amsterdam, The Netherlands.
-
(1998)
Biomembrane Structures
-
-
Belohorcova, K.1
Davis, J.H.2
-
4
-
-
0030733344
-
Structure and dynamics of an amphiphilic peptide in a lipid bilayer: A molecular dynamics study
-
Belohorcova, K., J. H. Davis, T. B. Woolf, and B. Roux. 1997. Structure and dynamics of an amphiphilic peptide in a lipid bilayer: A molecular dynamics study. Biophys. J. 73:3039-3055.
-
(1997)
Biophys. J.
, vol.73
, pp. 3039-3055
-
-
Belohorcova, K.1
Davis, J.H.2
Woolf, T.B.3
Roux, B.4
-
5
-
-
0011613265
-
Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane
-
Berneche, S., M. Nina, and B. Roux. 1998. Molecular dynamics simulation of melittin in a dimyristoylphosphatidylcholine bilayer membrane. Biophys. J. 75:1603-1618.
-
(1998)
Biophys. J.
, vol.75
, pp. 1603-1618
-
-
Berneche, S.1
Nina, M.2
Roux, B.3
-
6
-
-
0346213760
-
Direct determination of the oriented sample NMR spectrum from the powder pattern spectrum for systems with local axial symmetry
-
Bloom, M., J. H. Davis, and A. L. MacKay. 1981. Direct determination of the oriented sample NMR spectrum from the powder pattern spectrum for systems with local axial symmetry. Chem. Phys. Lett. 80:192-202.
-
(1981)
Chem. Phys. Lett.
, vol.80
, pp. 192-202
-
-
Bloom, M.1
Davis, J.H.2
MacKay, A.L.3
-
7
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks, B. R., R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus. 1983. CHARMM: a program for macromolecular energy, minimization and dynamics calculations. J. Comput. Chem. 4:187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
8
-
-
0002462243
-
Modulation of rhodopsin function by properties of the membrane bilayer
-
Brown, M. F. 1994. Modulation of rhodopsin function by properties of the membrane bilayer. Chem. Phys. Lipids. 104:5497-5509.
-
(1994)
Chem. Phys. Lipids
, vol.104
, pp. 5497-5509
-
-
Brown, M.F.1
-
9
-
-
0019419317
-
The headgroup conformation of phospholipids in membranes
-
Büldt, G., and R. Wohlgemuth. 1981. The headgroup conformation of phospholipids in membranes. J. Membr. Biol. 58:81-100.
-
(1981)
J. Membr. Biol.
, vol.58
, pp. 81-100
-
-
Büldt, G.1
Wohlgemuth, R.2
-
11
-
-
0029099308
-
Incorporation of surface tension into molecular dynamics simulation of an interface: A fluid phase lipid bilayer membrane
-
Chiu, S.-W., M. Clark, V. Balaji, S. Subramaniam, H. L. Scott, and E. Jacobsson. 1995. Incorporation of surface tension into molecular dynamics simulation of an interface: a fluid phase lipid bilayer membrane. Biophys. J. 69:1230-1245.
-
(1995)
Biophys. J.
, vol.69
, pp. 1230-1245
-
-
Chiu, S.-W.1
Clark, M.2
Balaji, V.3
Subramaniam, S.4
Scott, H.L.5
Jacobsson, E.6
-
12
-
-
0025937306
-
Molecular dynamics computations and solid state nuclear magnetic resonance of the gramicidin cation channel
-
Chiu, S.-W., L. K. Nicholson, M. T. Brenneman, S. Subramaniam, Q. Teng, J. A. McCammon, T. A. Cross, and E. Jacobsson. 1991. Molecular dynamics computations and solid state nuclear magnetic resonance of the gramicidin cation channel. Biophys. J. 60:974-978.
-
(1991)
Biophys. J.
, vol.60
, pp. 974-978
-
-
Chiu, S.-W.1
Nicholson, L.K.2
Brenneman, M.T.3
Subramaniam, S.4
Teng, Q.5
McCammon, J.A.6
Cross, T.A.7
Jacobsson, E.8
-
13
-
-
77956819892
-
Structural biology of peptides and proteins in synthetic membrane environments by solid-state NMR spectroscopy
-
Cross, T. A. 1994. Structural biology of peptides and proteins in synthetic membrane environments by solid-state NMR spectroscopy. Annu. Rep. NMR Spect. 29:123-167.
-
(1994)
Annu. Rep. NMR Spect.
, vol.29
, pp. 123-167
-
-
Cross, T.A.1
-
14
-
-
0027591938
-
Headgroup-water interactions in lipid bilayers: A comparison between DMPC- and DLPE-based lipid bilayers
-
Damodaran, K. V., and K. M. Merz, Jr. 1993. Headgroup-water interactions in lipid bilayers: a comparison between DMPC- and DLPE-based lipid bilayers. Langmuir. 9:1179-1183.
-
(1993)
Langmuir
, vol.9
, pp. 1179-1183
-
-
Damodaran, K.V.1
Merz Jr., K.M.2
-
15
-
-
0029100115
-
Interaction of small peptides with lipid bilayers
-
Damodaran, K. V., K. M. Merz, and B. P. Gaber. 1995. Interaction of small peptides with lipid bilayers. Biophys. J. 69:1299-1308.
-
(1995)
Biophys. J.
, vol.69
, pp. 1299-1308
-
-
Damodaran, K.V.1
Merz, K.M.2
Gaber, B.P.3
-
16
-
-
0018510430
-
Deuterium magnetic resonance study of the gel and liquid crystalline phases of dipalmitoyl phosphatidylcholine
-
Davis, J. H. 1979. Deuterium magnetic resonance study of the gel and liquid crystalline phases of dipalmitoyl phosphatidylcholine. Biophys. J. 27:339-358.
-
(1979)
Biophys. J.
, vol.27
, pp. 339-358
-
-
Davis, J.H.1
-
18
-
-
0001856813
-
Deuterium nuclear magnetic resonance spectroscopy in partially ordered systems
-
E. Buncel and J. R. Jones, editors. Elsevier Science Publishers B. V., Amsterdam
-
Davis, J. H. 1991. Deuterium nuclear magnetic resonance spectroscopy in partially ordered systems. In Isotopes in the Physical and Biomedical Sciences, vol. 2, E. Buncel and J. R. Jones, editors. Elsevier Science Publishers B. V., Amsterdam. 99-157.
-
(1991)
Isotopes in the Physical and Biomedical Sciences
, vol.2
, pp. 99-157
-
-
Davis, J.H.1
-
19
-
-
0006627015
-
Static and magic angle spinning NMR of membrane peptides and proteins
-
Davis, J. H., and M. Auger. 1999. Static and magic angle spinning NMR of membrane peptides and proteins. J. Prog. NMR Spect. 35:1-84.
-
(1999)
J. Prog. NMR Spect.
, vol.35
, pp. 1-84
-
-
Davis, J.H.1
Auger, M.2
-
20
-
-
0001006658
-
Interaction of a synthetic amphiphilic polypeptide and lipids in a bilayer structure
-
Davis, J. H., D. M. Clare, R. S. Hodges, and M. Bloom. 1983. Interaction of a synthetic amphiphilic polypeptide and lipids in a bilayer structure. Biochemistry. 22:5298-5305.
-
(1983)
Biochemistry
, vol.22
, pp. 5298-5305
-
-
Davis, J.H.1
Clare, D.M.2
Hodges, R.S.3
Bloom, M.4
-
21
-
-
0000745176
-
Quadrupolar echo deuterium nuclear magnetic resonance spectroscopy in ordered hydrocarbon chains
-
Davis, J. H., K. R. Jeffrey, M. Bloom, M. I. Valic, and T. P. Higgs. 1976. Quadrupolar echo deuterium nuclear magnetic resonance spectroscopy in ordered hydrocarbon chains. Chem. Phys. Lett. 42:390-394.
-
(1976)
Chem. Phys. Lett.
, vol.42
, pp. 390-394
-
-
Davis, J.H.1
Jeffrey, K.R.2
Bloom, M.3
Valic, M.I.4
Higgs, T.P.5
-
22
-
-
0026073608
-
Mean field stochastic boundary molecular dynamics simulation of a phospholipid in a membrane
-
De Loof, H., S. C. Harvey, J. P. Segrest, and R. W. Pastor. 1991. Mean field stochastic boundary molecular dynamics simulation of a phospholipid in a membrane. Biochemistry. 30:2099-2113.
-
(1991)
Biochemistry
, vol.30
, pp. 2099-2113
-
-
De Loof, H.1
Harvey, S.C.2
Segrest, J.P.3
Pastor, R.W.4
-
24
-
-
0028929692
-
Restatement of order parameters in biomembranes: Calculation of C-C bond order parameters from C-D quadrupolar splittings
-
Douliez, J.-P., A. Leonard, and E. J. Dufourc. 1995. Restatement of order parameters in biomembranes: calculation of C-C bond order parameters from C-D quadrupolar splittings. Biophys. J. 68:1727-1739.
-
(1995)
Biophys. J.
, vol.68
, pp. 1727-1739
-
-
Douliez, J.-P.1
Leonard, A.2
Dufourc, E.J.3
-
25
-
-
0034712674
-
Consequences of hydrophobic mismatch between lipids and melibiose permease on melibiose transport
-
Dumas, F., J.-F. Tocanne, G. Leblanc, and M.-C. Lebrun. 2000. Consequences of hydrophobic mismatch between lipids and melibiose permease on melibiose transport. Biochemistry. 39:4846-4854.
-
(2000)
Biochemistry
, vol.39
, pp. 4846-4854
-
-
Dumas, F.1
Tocanne, J.-F.2
Leblanc, G.3
Lebrun, M.-C.4
-
26
-
-
0033010267
-
Molecular dynamics simulations of the Erb-B2 transmembrane domain within an explicit membrane environment: Comparison with vacuum simulations
-
Duneau, J.-P., S. Crouzy, N. Garnier, Y. Chapron, and M. Genest. 1999. Molecular dynamics simulations of the Erb-B2 transmembrane domain within an explicit membrane environment: comparison with vacuum simulations. Biophys. Chem. 76:35-53.
-
(1999)
Biophys. Chem.
, vol.76
, pp. 35-53
-
-
Duneau, J.-P.1
Crouzy, S.2
Garnier, N.3
Chapron, Y.4
Genest, M.5
-
27
-
-
0029026347
-
Structure and fluctuations of bacteriorhodopsin in the purple membrane: A molecular dynamics study
-
Edholm, O., O. Berger, and F. Jahnig. 1995. Structure and fluctuations of bacteriorhodopsin in the purple membrane: a molecular dynamics study. J. Mol. Biol. 250:94-111.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 94-111
-
-
Edholm, O.1
Berger, O.2
Jahnig, F.3
-
28
-
-
0028258175
-
Molecular dynamics simulation of a phospholipid membrane
-
Egberts, E., S. J. Marrink, and H. J. C. Berendsen. 1994. Molecular dynamics simulation of a phospholipid membrane. Eur. Biophys. J. 22:423-436.
-
(1994)
Eur. Biophys. J.
, vol.22
, pp. 423-436
-
-
Egberts, E.1
Marrink, S.J.2
Berendsen, H.J.C.3
-
29
-
-
0033030567
-
Dynamical properties of phospholipid bilayers from computer simulation
-
Essman, U., and M. L. Berkowitz. 1999. Dynamical properties of phospholipid bilayers from computer simulation. Biophys. J. 76:2081-2089.
-
(1999)
Biophys. J.
, vol.76
, pp. 2081-2089
-
-
Essman, U.1
Berkowitz, M.L.2
-
30
-
-
36449007836
-
Constant pressure molecular dynamics simulation: The Langevin piston method
-
Feller, S. E., Y. Zhang, R. W. Pastor, and B. R. Brooks. 1995. Constant pressure molecular dynamics simulation: the Langevin piston method. J. Chem. Phys. 103:4613-4621.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 4613-4621
-
-
Feller, S.E.1
Zhang, Y.2
Pastor, R.W.3
Brooks, B.R.4
-
32
-
-
0017230777
-
Structural analysis of hydrated egg lecithin and cholesterol bilayers
-
Franks, N. P. 1976. Structural analysis of hydrated egg lecithin and cholesterol bilayers. J. Mol. Biol. 100:345-358.
-
(1976)
J. Mol. Biol.
, vol.100
, pp. 345-358
-
-
Franks, N.P.1
-
34
-
-
0032988823
-
Experimental evidence for hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin
-
Harroun, T. A., W. T. Heller, T. M. Weiss, L. Yang, and H. W. Huang. 1999a. Experimental evidence for hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin. Biophys. J. 76:937-945.
-
(1999)
Biophys. J.
, vol.76
, pp. 937-945
-
-
Harroun, T.A.1
Heller, W.T.2
Weiss, T.M.3
Yang, L.4
Huang, H.W.5
-
35
-
-
0033038093
-
Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin
-
Harroun, T. A., W. T. Heller, T. M. Weiss, L. Yang, and H. W. Huang. 1999b. Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin. Biophys. J. 76:3176-3185.
-
(1999)
Biophys. J.
, vol.76
, pp. 3176-3185
-
-
Harroun, T.A.1
Heller, W.T.2
Weiss, T.M.3
Yang, L.4
Huang, H.W.5
-
36
-
-
0019882643
-
Preferred conformation and molecular packing of phosphatidylethanolamine and phosphatidylcholine
-
Hauser, H., I. Pascher, R. H. Pearson, and S. Sundell. 1981. Preferred conformation and molecular packing of phosphatidylethanolamine and phosphatidylcholine. Biochim. Biophys. Acta. 650:21-51.
-
(1981)
Biochim. Biophys. Acta
, vol.650
, pp. 21-51
-
-
Hauser, H.1
Pascher, I.2
Pearson, R.H.3
Sundell, S.4
-
37
-
-
36749121917
-
Brownian dynamics study of transitions in a polymer chain of bistable oscillators
-
Helfand, E. 1978. Brownian dynamics study of transitions in a polymer chain of bistable oscillators. J. Chem. Phys. 69:1010-1018.
-
(1978)
J. Chem. Phys.
, vol.69
, pp. 1010-1018
-
-
Helfand, E.1
-
38
-
-
0015501763
-
Calorimetric studies of dilute aqueous suspensions of bilayers formed from synthetic L-α-lecithins
-
Hinz, H.-J., and J. M. Sturtevant. 1972. Calorimetric studies of dilute aqueous suspensions of bilayers formed from synthetic L-α-lecithins. J. Biol. Chem. 247:6071-6075.
-
(1972)
J. Biol. Chem.
, vol.247
, pp. 6071-6075
-
-
Hinz, H.-J.1
Sturtevant, J.M.2
-
39
-
-
0016788374
-
Phospholipid arrangements in multilayers and artificial membranes: Quantitative analysis of the x-ray diffraction data from a multilayer of 1,2-dimyristoyl-DL-phosphatidylethanolamine
-
Hitchcock, P. B., R. Mason, and G. G. Shipley. 1975. Phospholipid arrangements in multilayers and artificial membranes: quantitative analysis of the x-ray diffraction data from a multilayer of 1,2-dimyristoyl-DL-phosphatidylethanolamine. J. Mol. Biol. 94:297-299.
-
(1975)
J. Mol. Biol.
, vol.94
, pp. 297-299
-
-
Hitchcock, P.B.1
Mason, R.2
Shipley, G.G.3
-
40
-
-
0000068844
-
Critical factors in design of sensitive high-resolution nuclear magnetic resonance spectrometers
-
Hoult, D. I., and R. E. Richards. 1975. Critical factors in design of sensitive high-resolution nuclear magnetic resonance spectrometers. Proc. R. Soc. Lond. A. 344:311-340.
-
(1975)
Proc. R. Soc. Lond. A
, vol.344
, pp. 311-340
-
-
Hoult, D.I.1
Richards, R.E.2
-
41
-
-
0029038366
-
Interaction of an amphiphilic peptide with a phospholipid bilayer surface by molecular dynamics simulation study
-
Huang, P., and G. H. Loew. 1995. Interaction of an amphiphilic peptide with a phospholipid bilayer surface by molecular dynamics simulation study. J. Biomol. Struct. Dyn. 12:937-956.
-
(1995)
J. Biomol. Struct. Dyn.
, vol.12
, pp. 937-956
-
-
Huang, P.1
Loew, G.H.2
-
42
-
-
0000616967
-
Phase equilibria in an amphiphilic peptide-phospholipid model membrane by deuterium nuclear magnetic resonance difference spectroscopy
-
Huschilt, J. C., R. S. Hodges, and J. H. Davis. 1985. Phase equilibria in an amphiphilic peptide-phospholipid model membrane by deuterium nuclear magnetic resonance difference spectroscopy. Biochemistry. 24: 1377-1386.
-
(1985)
Biochemistry
, vol.24
, pp. 1377-1386
-
-
Huschilt, J.C.1
Hodges, R.S.2
Davis, J.H.3
-
44
-
-
0028070549
-
Parallel helix bundles and ion channels. Molecular modeling via simulated annealing and restrained molecular dynamics
-
Kerr, I. D., R. Sankararamakrishnan, J. D. Madura, R. W. Impey, and M. L. Klein. 1994. Parallel helix bundles and ion channels. Molecular modeling via simulated annealing and restrained molecular dynamics. Biophys. J. 67:1501-1515.
-
(1994)
Biophys. J.
, vol.67
, pp. 1501-1515
-
-
Kerr, I.D.1
Sankararamakrishnan, R.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
45
-
-
0030183359
-
Macromolecular structural elucidation with solid-state NMR derived orientational constraints
-
Ketchem, R. R., K.-C. Lee, S. Huo, and T. A. Cross. 1996. Macromolecular structural elucidation with solid-state NMR derived orientational constraints. J. Biomolec. NMR. 8:1-14.
-
(1996)
J. Biomolec. NMR
, vol.8
, pp. 1-14
-
-
Ketchem, R.R.1
Lee, K.-C.2
Huo, S.3
Cross, T.A.4
-
46
-
-
0002558940
-
Spin-lattice relaxation and lineshape parameters in nuclear magnetic resonance of lamellar lipid systems: Fluctuation spectroscopy of disordering mechanisms
-
Kimmich, R., G. Schnur, and A. Scheuermann. 1983. Spin-lattice relaxation and lineshape parameters in nuclear magnetic resonance of lamellar lipid systems: fluctuation spectroscopy of disordering mechanisms. Chem. Phys. Lipids. 2:271-322.
-
(1983)
Chem. Phys. Lipids
, vol.2
, pp. 271-322
-
-
Kimmich, R.1
Schnur, G.2
Scheuermann, A.3
-
47
-
-
0028904088
-
The effect of environment on the stability of an integral membrane helix: Molecular dynamics simulations of surfactant protein C in chloroform, methanol and water
-
Kovacs, H., A. E. Mark, J. Johansson, and W. F. van Gunsteren. 1995. The effect of environment on the stability of an integral membrane helix: molecular dynamics simulations of surfactant protein C in chloroform, methanol and water. J. Mol. Biol. 247:808-822.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 808-822
-
-
Kovacs, H.1
Mark, A.E.2
Johansson, J.3
Van Gunsteren, W.F.4
-
49
-
-
0021104058
-
Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles
-
Lewis, B. A., and D. M. Engelman. 1983. Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. J. Mol. Biol. 166:211-217.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 211-217
-
-
Lewis, B.A.1
Engelman, D.M.2
-
50
-
-
0000217485
-
Self-consistent parametrization of biomolecules for molecular modeling and condensed phase simulations
-
Abstr.
-
Mackerell, A. D., D. Bashford, M. Bellot, R. L. Dunbrack, M. J. Field, S. Fischer, J. Gao, H. Guo, D. Joseph, S. Ha, L. Kuchnir, K. Kuczera, F. T. K. Lau, C. Mattos, S. Michnick, D. T. Nguyen, T. Ngo, B. Prodhom, B. Roux, B. Schlenkrich, J. Smith, R. Stole, J. Straub, J. Wiorkiewicz-Kuczera, and M. Karplus. 1992. Self-consistent parametrization of biomolecules for molecular modeling and condensed phase simulations. Biophys. J. 61:143a. (Abstr.).
-
(1992)
Biophys. J.
, vol.61
-
-
Mackerell, A.D.1
Bashford, D.2
Bellot, M.3
Dunbrack, R.L.4
Field, M.J.5
Fischer, S.6
Gao, J.7
Guo, H.8
Joseph, D.9
Ha, S.10
Kuchnir, L.11
Kuczera, K.12
Lau, F.T.K.13
Mattos, C.14
Michnick, S.15
Nguyen, D.T.16
Ngo, T.17
Prodhom, B.18
Roux, B.19
Schlenkrich, B.20
Smith, J.21
Stole, R.22
Straub, J.23
Wiorkiewicz-Kuczera, J.24
Karplus, M.25
more..
-
51
-
-
0000386579
-
Molecular dynamics simulation of a membrane/water interface: The ordering of water and its relation to the hydration force
-
Marrink, S.-J., M. Berkowitz, and H. J. C. Berendsen. 1993. Molecular dynamics simulation of a membrane/water interface: the ordering of water and its relation to the hydration force. Langmuir. 9:3122-3131.
-
(1993)
Langmuir
, vol.9
, pp. 3122-3131
-
-
Marrink, S.-J.1
Berkowitz, M.2
Berendsen, H.J.C.3
-
52
-
-
0141911433
-
Multipulse dynamic nuclear magnetic resonance of phospholipid membranes
-
Meier, P., E. Ohmes, and G. Kothe. 1986. Multipulse dynamic nuclear magnetic resonance of phospholipid membranes. J. Chem. Phys. 85: 3598-3614.
-
(1986)
J. Chem. Phys.
, vol.85
, pp. 3598-3614
-
-
Meier, P.1
Ohmes, E.2
Kothe, G.3
-
53
-
-
0024462478
-
Quantitative determination of conformational disorder in the acyl chains of phospholipid bilayers by infrared spectroscopy
-
Mendelsohn, R., M. A. Davies, J. W. Brauner, H. F. Schuster, and R. A. Dluhy. 1989. Quantitative determination of conformational disorder in the acyl chains of phospholipid bilayers by infrared spectroscopy. Biochemistry. 28:8934-8939.
-
(1989)
Biochemistry
, vol.28
, pp. 8934-8939
-
-
Mendelsohn, R.1
Davies, M.A.2
Brauner, J.W.3
Schuster, H.F.4
Dluhy, R.A.5
-
54
-
-
0001780747
-
Infrared spectroscopic determination of conformational disorder and microphase separation in phospholipid acyl chains
-
K. Merz and B. Roux, editors. Birkhauser, Boston
-
Mendelsohn, R., and R. G. Snyder. 1996. Infrared spectroscopic determination of conformational disorder and microphase separation in phospholipid acyl chains. In Biological Membranes. K. Merz and B. Roux, editors. Birkhauser, Boston. 145-174.
-
(1996)
Biological Membranes
, pp. 145-174
-
-
Mendelsohn, R.1
Snyder, R.G.2
-
55
-
-
0034108440
-
The effect of peptide/lipid hydrophobic mismatch on the phase behavior of model membranes mimicking the lipid composition in Escherichia coli membranes
-
Morein, S., R. E. Koeppe II, G. Lindblom, B. de Kruijff, and J. Antoinette Killian. 2000. The effect of peptide/lipid hydrophobic mismatch on the phase behavior of model membranes mimicking the lipid composition in Escherichia coli membranes. Biophys. J. 78:2475-2485.
-
(2000)
Biophys. J.
, vol.78
, pp. 2475-2485
-
-
Morein, S.1
Koeppe II, R.E.2
Lindblom, G.3
De Kruijff, B.4
Antoinette Killian, J.5
-
56
-
-
0023898836
-
2H-NMR studies of the phase behaviour of gramicidin-phosphatidylcholine mixtures
-
2H-NMR studies of the phase behaviour of gramicidin-phosphatidylcholine mixtures. Biochemistry. 27:2024-2032.
-
(1988)
Biochemistry
, vol.27
, pp. 2024-2032
-
-
Morrow, M.R.1
Davis, J.H.2
-
57
-
-
0022399766
-
Simultaneous modeling of phase and calorimetric behaviour in an amphiphilic peptide/ phospholipid model membrane
-
Morrow, M. R., J. C. Huschilt, and J. H. Davis. 1985. Simultaneous modeling of phase and calorimetric behaviour in an amphiphilic peptide/ phospholipid model membrane. Biochemistry. 24:5396-5406.
-
(1985)
Biochemistry
, vol.24
, pp. 5396-5406
-
-
Morrow, M.R.1
Huschilt, J.C.2
Davis, J.H.3
-
58
-
-
0021474573
-
Mattress model of lipid-protein interactions in membranes
-
Mouritsen, O. G., and M. Bloom. 1984. Mattress model of lipid-protein interactions in membranes. Biophys. J. 46:141-153.
-
(1984)
Biophys. J.
, vol.46
, pp. 141-153
-
-
Mouritsen, O.G.1
Bloom, M.2
-
59
-
-
0027251833
-
Area/lipid of bilayers from NMR
-
Nagle, J. F. 1993. Area/lipid of bilayers from NMR. Biophys. J. 64: 1476-1481.
-
(1993)
Biophys. J.
, vol.64
, pp. 1476-1481
-
-
Nagle, J.F.1
-
60
-
-
0030033065
-
X-ray structure determination of fully hydrated L alpha phase dipalmitoylphosphatidylcholine bilayers
-
Nagle, J. F., R. Zhang, S. Tristram-Nagle, W. Sun, H. I. Petrache, and R. M. Suter. 1996. X-ray structure determination of fully hydrated L alpha phase dipalmitoylphosphatidylcholine bilayers. Biophys. J. 70: 1419-1431.
-
(1996)
Biophys. J.
, vol.70
, pp. 1419-1431
-
-
Nagle, J.F.1
Zhang, R.2
Tristram-Nagle, S.3
Sun, W.4
Petrache, H.I.5
Suter, R.M.6
-
61
-
-
0017805674
-
Disorder in nerve myelin: Phasing the higher order reflections by means of the diffuse scatter
-
Nelander, J. C., and A. E. Blaurock. 1978. Disorder in nerve myelin: phasing the higher order reflections by means of the diffuse scatter. J. Mol. Biol. 118:497-532.
-
(1978)
J. Mol. Biol.
, vol.118
, pp. 497-532
-
-
Nelander, J.C.1
Blaurock, A.E.2
-
62
-
-
0029024518
-
Correlations between function and dynamics: Time scale coincidence for ion translocation and molecular dynamics in the gramicidin channel backbone
-
North, C. L., and T. A. Cross. 1995. Correlations between function and dynamics: time scale coincidence for ion translocation and molecular dynamics in the gramicidin channel backbone. Biochemistry. 34: 5883-5895.
-
(1995)
Biochemistry
, vol.34
, pp. 5883-5895
-
-
North, C.L.1
Cross, T.A.2
-
63
-
-
0017816466
-
Spectroscopic studies of specifically deuterium labeled membrane systems. Nuclear magnetic resonance investigation of the effects of cholesterol in model systems
-
Oldfield, E., M. Meadows, D. Rice, and R. Jacobs. 1978. Spectroscopic studies of specifically deuterium labeled membrane systems. Nuclear magnetic resonance investigation of the effects of cholesterol in model systems. Biochemistry. 17:2727-2740.
-
(1978)
Biochemistry
, vol.17
, pp. 2727-2740
-
-
Oldfield, E.1
Meadows, M.2
Rice, D.3
Jacobs, R.4
-
64
-
-
0026447586
-
Crystal structures of membrane lipids
-
Pascher, I., M. Lundmark, P.-G. Nyholm, and S. Sundell. 1992. Crystal structures of membrane lipids. Biochim. Biophys. Acta. 1113:339-373.
-
(1992)
Biochim. Biophys. Acta
, vol.1113
, pp. 339-373
-
-
Pascher, I.1
Lundmark, M.2
Nyholm, P.-G.3
Sundell, S.4
-
65
-
-
0033015372
-
Charge pairing of headgroups in phosphatidylcholine membranes: A molecular dynamics simulation study
-
Pasenkiewicz-Gierula, M., Y. Takaoka, H. Mihagawa, K. Kitamura, and A. Kusumi. 1999. Charge pairing of headgroups in phosphatidylcholine membranes: a molecular dynamics simulation study. Biophys. J. 76: 1228-1240.
-
(1999)
Biophys. J.
, vol.76
, pp. 1228-1240
-
-
Pasenkiewicz-Gierula, M.1
Takaoka, Y.2
Mihagawa, H.3
Kitamura, K.4
Kusumi, A.5
-
66
-
-
0001837595
-
Time scales of lipid dynamics and molecular dynamics
-
K. M. Merz, Jr., and B. Roux, editors. Birkhauser, Boston
-
Pastor, R. W., and S. E. Feller. 1996. Time scales of lipid dynamics and molecular dynamics. In Biological Membranes: A Molecular Perspective from Computation and Experiment. K. M. Merz, Jr., and B. Roux, editors. Birkhauser, Boston. 3-29.
-
(1996)
Biological Membranes: A Molecular Perspective from Computation and Experiment
, pp. 3-29
-
-
Pastor, R.W.1
Feller, S.E.2
-
69
-
-
0019330568
-
Raman scattering in bilayers of saturated phosphatidylcholines. Experiment and theory
-
Pink, D., T. J. Green, and D. Chapman. 1980. Raman scattering in bilayers of saturated phosphatidylcholines. Experiment and theory. Biochemistry. 19:349-356.
-
(1980)
Biochemistry
, vol.19
, pp. 349-356
-
-
Pink, D.1
Green, T.J.2
Chapman, D.3
-
70
-
-
0028330797
-
Dynamics of an integral membrane protein: A deuterium NMR relaxation study of gramicidin
-
Prosser, R. S., and J. H. Davis. 1994. Dynamics of an integral membrane protein: a deuterium NMR relaxation study of gramicidin. Biophys. J. 66:1429-1440.
-
(1994)
Biophys. J.
, vol.66
, pp. 1429-1440
-
-
Prosser, R.S.1
Davis, J.H.2
-
71
-
-
0026793754
-
Deuterium NMR relaxation studies of peptide-lipid interactions
-
Prosser, R. S., J. H. Davis, C. Mayer, K. Weisz, and G. Kothe. 1992. Deuterium NMR relaxation studies of peptide-lipid interactions. Biochemistry. 31:9355-9363.
-
(1992)
Biochemistry
, vol.31
, pp. 9355-9363
-
-
Prosser, R.S.1
Davis, J.H.2
Mayer, C.3
Weisz, K.4
Kothe, G.5
-
72
-
-
0028210494
-
The structure of an integral membrane peptide: A deuterium NMR study of gramicidin
-
Prosser, R. S., S. I. Daleman, and J. H. Davis. 1994. The structure of an integral membrane peptide: a deuterium NMR study of gramicidin. Biophys. J. 66:1415-1428.
-
(1994)
Biophys. J.
, vol.66
, pp. 1415-1428
-
-
Prosser, R.S.1
Daleman, S.I.2
Davis, J.H.3
-
74
-
-
0027944290
-
Headgroup and chain behavior in biological membranes: A molecular dynamics computer simulation
-
Robinson, A. J., W. G. Richards, P. J. Thomas, and M. M. Hann. 1994. Headgroup and chain behavior in biological membranes: a molecular dynamics computer simulation. Biophys. J. 67:2345-2354.
-
(1994)
Biophys. J.
, vol.67
, pp. 2345-2354
-
-
Robinson, A.J.1
Richards, W.G.2
Thomas, P.J.3
Hann, M.M.4
-
75
-
-
0024589502
-
Conformational changes of phospholipid headgroups induced by a cationic integral membrane peptide as seen by deuterium magnetic resonance
-
Roux, M., J.-M. Neumann, R. S. Hodges, P. F. Devaux, and M. Bloom. 1989. Conformational changes of phospholipid headgroups induced by a cationic integral membrane peptide as seen by deuterium magnetic resonance. Biochemistry. 28:2313-2321.
-
(1989)
Biochemistry
, vol.28
, pp. 2313-2321
-
-
Roux, M.1
Neumann, J.-M.2
Hodges, R.S.3
Devaux, P.F.4
Bloom, M.5
-
76
-
-
0002937720
-
Molecular dynamics of Pf1 coat protein in a phospholipid bilayer
-
K.M. Merz, Jr. and B. Roux, editors. Birkhauser, Boston
-
Roux, B., and T. B. Woolf. 1996. Molecular dynamics of Pf1 coat protein in a phospholipid bilayer. In Biological Membranes: A Molecular Perspective from Computation and Experiment. K.M. Merz, Jr. and B. Roux, editors. Birkhauser, Boston. 555-587.
-
(1996)
Biological Membranes: a Molecular Perspective from Computation and Experiment
, pp. 555-587
-
-
Roux, B.1
Woolf, T.B.2
-
77
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.-P., G. Ciccotti, and H. J. C. Berendsen. 1977. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 23: 327-341.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
78
-
-
0016760687
-
Deuterium order parameters in relation to thermodynamic properties of a phospholipid bilayer. A statistical mechanical interpretation
-
Schindler, H., and J. Seelig. 1975. Deuterium order parameters in relation to thermodynamic properties of a phospholipid bilayer. A statistical mechanical interpretation. Biochemistry. 14:2283-2287.
-
(1975)
Biochemistry
, vol.14
, pp. 2283-2287
-
-
Schindler, H.1
Seelig, J.2
-
79
-
-
0017902280
-
Nuclear magnetic resonance and the headgroup structure of phospholipids in membranes
-
Seelig, J. 1978. Nuclear magnetic resonance and the headgroup structure of phospholipids in membranes. Biochim. Biophys. Acta. 515:105-140.
-
(1978)
Biochim. Biophys. Acta
, vol.515
, pp. 105-140
-
-
Seelig, J.1
-
80
-
-
0017372433
-
Orientation and flexibility of the choline headgroup in phosphatidylcholine bilayers
-
Seelig, J., H.-U. Gaily, and R. Wohlgemuth. 1977. Orientation and flexibility of the choline headgroup in phosphatidylcholine bilayers. Biochim. Biophys. Acta. 467:109-119.
-
(1977)
Biochim. Biophys. Acta
, vol.467
, pp. 109-119
-
-
Seelig, J.1
Gaily, H.-U.2
Wohlgemuth, R.3
-
81
-
-
0016283654
-
The dynamic structure of fatty acyl chains in a phospholipid bilayer measured by deuterium magnetic resonance
-
Seelig, A., and J. Seelig. 1974. The dynamic structure of fatty acyl chains in a phospholipid bilayer measured by deuterium magnetic resonance. Biochemistry. 13:4839-4845.
-
(1974)
Biochemistry
, vol.13
, pp. 4839-4845
-
-
Seelig, A.1
Seelig, J.2
-
82
-
-
0018982584
-
Lipid conformation in model membranes and biological membranes
-
Seelig, J., and A. Seelig. 1980. Lipid conformation in model membranes and biological membranes. Q. Rev. Biophys. 13:19-61.
-
(1980)
Q. Rev. Biophys.
, vol.13
, pp. 19-61
-
-
Seelig, J.1
Seelig, A.2
-
83
-
-
0030966534
-
Transmembrane helix structure, dynamics and interactions: Multi-nanosecond molecular dynamics simulations
-
Shen, L., D. Bassolino, and T. Stouch. 1997. Transmembrane helix structure, dynamics and interactions: multi-nanosecond molecular dynamics simulations. Biophys. J. 73:3-20.
-
(1997)
Biophys. J.
, vol.73
, pp. 3-20
-
-
Shen, L.1
Bassolino, D.2
Stouch, T.3
-
84
-
-
0027866243
-
Lipid membrane structure and dynamics studied by all-atom molecular dynamics simulations of hydrated phospholipid bilayers
-
Stouch, T. R. 1993. Lipid membrane structure and dynamics studied by all-atom molecular dynamics simulations of hydrated phospholipid bilayers. Mol. Sim. 10:335-362.
-
(1993)
Mol. Sim.
, vol.10
, pp. 335-362
-
-
Stouch, T.R.1
-
85
-
-
0015517262
-
Molecular structures and conformations of the phospholipids and sphingomyelins
-
Sundaralingam, M. 1972. Molecular structures and conformations of the phospholipids and sphingomyelins. Ann. NY Acad. Sci. 195:324-355.
-
(1972)
Ann. NY Acad. Sci.
, vol.195
, pp. 324-355
-
-
Sundaralingam, M.1
-
86
-
-
0031860932
-
A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmiloyleoleoylphosphatidylcholine bilayer
-
Tieleman, D. P., and H. J. C. Berendsen. 1998. A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmiloyleoleoylphosphatidylcholine bilayer. Biophys. J. 74: 2786-2801.
-
(1998)
Biophys. J.
, vol.74
, pp. 2786-2801
-
-
Tieleman, D.P.1
Berendsen, H.J.C.2
-
87
-
-
0033035249
-
An alamethicin channel in a lipid bilayer: Molecular dynamics simulations
-
Tieleman, D. P., H. J. C. Berendsen, and M. S. P. Sansom. 1999a. An alamethicin channel in a lipid bilayer: molecular dynamics simulations. Biophys. J. 76:1757-1769.
-
(1999)
Biophys. J.
, vol.76
, pp. 1757-1769
-
-
Tieleman, D.P.1
Berendsen, H.J.C.2
Sansom, M.S.P.3
-
88
-
-
0032998180
-
Surface binding of alamethicin stabilizes its helical structure: Molecular dynamics simulations
-
Tieleman, D. P., H. J. C. Berendsen, and M. S. P. Sansom. 1999b. Surface binding of alamethicin stabilizes its helical structure: molecular dynamics simulations. Biophys. J. 76:3186-3191.
-
(1999)
Biophys. J.
, vol.76
, pp. 3186-3191
-
-
Tieleman, D.P.1
Berendsen, H.J.C.2
Sansom, M.S.P.3
-
89
-
-
0031438285
-
A computer perspective of membranes: Molecular dynamics studies of lipid bilayer systems
-
Tieleman, D. P., S. J. Marrink, and H. J. C. Berendsen. 1997. A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems. Biochim. Biophys. Acta. 1331:235-270.
-
(1997)
Biochim. Biophys. Acta
, vol.1331
, pp. 235-270
-
-
Tieleman, D.P.1
Marrink, S.J.2
Berendsen, H.J.C.3
-
90
-
-
0027246179
-
Molecular dynamics simulation of pf1 coat protein
-
Tobias, D. J., M. L. Klein, and S. J. Opella. 1993. Molecular dynamics simulation of pf1 coat protein. Biophys. J. 64:670-675.
-
(1993)
Biophys. J.
, vol.64
, pp. 670-675
-
-
Tobias, D.J.1
Klein, M.L.2
Opella, S.J.3
-
91
-
-
0002883739
-
Atomic-scale molecular dynamics simulations of lipid membranes
-
Tobias, D. J., K. Tu, and M. L. Klein. 1997. Atomic-scale molecular dynamics simulations of lipid membranes. Curr. Opin. Coll. Int. Sci. 2:15-26.
-
(1997)
Curr. Opin. Coll. Int. Sci.
, vol.2
, pp. 15-26
-
-
Tobias, D.J.1
Tu, K.2
Klein, M.L.3
-
92
-
-
84951854486
-
Molecular dynamics of a bilayer membrane
-
van der Ploeg, P., and H. J. C. Berendsen. 1983. Molecular dynamics of a bilayer membrane. Mol. Phys. 49:233-248.
-
(1983)
Mol. Phys.
, vol.49
, pp. 233-248
-
-
Van Der Ploeg, P.1
Berendsen, H.J.C.2
-
93
-
-
0027515072
-
Molecular dynamics simulations of a lipid bilayer and of hexadecane: An investigation of membrane fluidity
-
Venable, R. M., Y. Zhang, B. J. Hardy, and R. W. Pastor. 1993. Molecular dynamics simulations of a lipid bilayer and of hexadecane: an investigation of membrane fluidity. Science. 262:223-226.
-
(1993)
Science
, vol.262
, pp. 223-226
-
-
Venable, R.M.1
Zhang, Y.2
Hardy, B.J.3
Pastor, R.W.4
-
94
-
-
22944467757
-
Compuler experiments on classical fluids. I. Thermodynamical properties of Lennard-Jones molecules
-
Verlet, L. 1967. Compuler experiments on classical fluids. I. Thermodynamical properties of Lennard-Jones molecules. Phys. Rev. 159:98-103.
-
(1967)
Phys. Rev.
, vol.159
, pp. 98-103
-
-
Verlet, L.1
-
95
-
-
0026683431
-
Structure of a fluid dioleoylphosphalidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups
-
Wiener, M. C., and S. H. White. 1992a. Structure of a fluid dioleoylphosphalidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups. Biophys. J. 61:428-433.
-
(1992)
Biophys. J.
, vol.61
, pp. 428-433
-
-
Wiener, M.C.1
White, S.H.2
-
96
-
-
0026729232
-
Structure of a fluid dioleoylphosphalidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure
-
Wiener, M. C., and S. H. White. 1992b. Structure of a fluid dioleoylphosphalidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure. Biophys. J. 61: 434-447.
-
(1992)
Biophys. J.
, vol.61
, pp. 434-447
-
-
Wiener, M.C.1
White, S.H.2
-
97
-
-
0028020035
-
Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer
-
Woolf, T. B., and B. Roux. 1994a. Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer. Proc. Natl. Acad. Sci. U.S.A. 91:11631-11635.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 11631-11635
-
-
Woolf, T.B.1
Roux, B.2
-
98
-
-
0000628743
-
Conformational flexibility of o-phosphorylcholine and o-phosphorylethanolamine: A molecular dynamics study of solvation effects
-
Woolf, T. B., and B. Roux. 1994b. Conformational flexibility of o-phosphorylcholine and o-phosphorylethanolamine: a molecular dynamics study of solvation effects. J. Am. Chem. Soc. 116:5916-5926.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 5916-5926
-
-
Woolf, T.B.1
Roux, B.2
-
99
-
-
0030038849
-
Structure, energetics and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer
-
Woolf, T. B., and B. Roux. 1996. Structure, energetics and dynamics of lipid-protein interactions: a molecular dynamics study of the gramicidin A channel in a DMPC bilayer. Proteins. 24:92-114.
-
(1996)
Proteins
, vol.24
, pp. 92-114
-
-
Woolf, T.B.1
Roux, B.2
-
100
-
-
0027928064
-
A comparison of methods for computing transition rates from molecular dynamics simulation
-
Zhang, Y., and R. W. Pastor. 1994. A comparison of methods for computing transition rates from molecular dynamics simulation. Mol. Sim. 13:25-38.
-
(1994)
Mol. Sim.
, vol.13
, pp. 25-38
-
-
Zhang, Y.1
Pastor, R.W.2
|