Profiles from structures based sequence alignment of porins can identify β stranded integral membrane proteins

Bioinformatics

Volumn 16, Issue 9, 2000, Pages 839-842

  Gnanasekaran, T V ^a   Peri, S ^a   Arockiasamy, A ^a   Krishnaswamy, S ^a  

^a MADURAI KAMARAJ UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN; PORIN; UBIQUINOL CYTOCHROME C REDUCTASE;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPUTER ANALYSIS; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; ESCHERICHIA COLI; GENETIC PROCEDURES; GRAM NEGATIVE BACTERIUM; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; RHODOPSEUDOMONAS; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; CHEMISTRY; CONSENSUS SEQUENCE; FACTUAL DATABASE; METHODOLOGY; NUCLEOTIDE SEQUENCE; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; RHODOPSEUDOMONAS;

ALGORITHMS; AMINO ACID MOTIFS; CONSENSUS SEQUENCE; CONSERVED SEQUENCE; DATABASES, FACTUAL; MEMBRANE PROTEINS; PORINS; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

EID: 0033625972     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/16.9.839     Document Type: Article

References (10)

1. Basic local alignment search tool
2. The SWISS-PROT protein sequence data bank and its supplement TrEMBL
3. The protein databank: A computer-based archival file for macromolecular structures
4. OWL-a nonredundant composite protein sequence database
5. Profile analysis: Detection of distantly related proteins
6. Detection of likely transmembrane b-strand regions in sequences of Mitochondrial pore proteins using the Gibbs sampler
7. SCOP: A structural classification of proteins database for the investigation of sequences and structures
8. Gibbs motif sampling: Detection of bacterial outer membrane protein repeats
9. Porins: General to specific, native to engineered passive pores