Determination of h2J(NN) and h1j(HN) coupling constants across Watson- Crick base pairs in the Antennapedia homeodomain-DNA complex using TROSY

Journal of Biomolecular NMR

Volumn 16, Issue 1, 2000, Pages 39-46

  Pervushin, Konstantin ^a   Fernández, César ^a   Riek, Roland ^a   Ono, Akira ^b   Kainosho, Masatsune ^b   Wüthrich, Kurt ^a  

^a ETH ZURICH   (Switzerland)

^b TOKYO METROPOLITAN UNIVERSITY   (Japan)

Author keywords

Hydrogen bonds; Nucleic acid structure; Scalar coupling; TROSY

Indexed keywords

HOMEODOMAIN PROTEIN; ANTENNAPEDIA PROTEIN; DNA; NUCLEAR PROTEIN; TRANSCRIPTION FACTOR;

ARTICLE; BASE PAIRING; COMPLEX FORMATION; DNA DETERMINATION; DNA STRUCTURE; HYDROGEN BOND; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; STRUCTURE ANALYSIS; CHEMISTRY; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE; OPERATOR GENE; PROTEIN BINDING;

ANTENNAPEDIA HOMEODOMAIN PROTEIN; BASE PAIRING; DNA; HOMEODOMAIN PROTEINS; HYDROGEN BONDING; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEAR PROTEINS; OPERATOR REGIONS (GENETICS); PROTEIN BINDING; TRANSCRIPTION FACTORS;

EID: 0033621766     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008367405025     Document Type: Article

References (29)

1. Billeter, M., Qian, Y.Q., Otting, G., Müller, M., Gehring, W.J. and Wüthrich, K. (1993) J. Mol. Biol., 234, 1084-1093.
2. Blake, P.R., Lee, B., Summers, M.F., Adams, M.W.W., Park, J.B., Zhou, Z.H. and Bax, A. (1992) J. Biomol. NMR, 2, 527-533.
3. Blake, P.R., Park, J.B., Adams, M.W.W. and Summers, M.F. (1992) J. Am. Chem. Soc., 114, 4931-4933.
4. Cavanagh, J. and Rance, M. (1993) Annu. Rep. NMR Spectrosc., 27, 1-58.
5. Dingley, A.J. and Grzesiek, S. (1998) J. Am. Chem. Soc., 120, 8293-8297.
6. Dingley, A.J., Masse, J.E., Peterson, R.D., Barfield, M., Feigon, J. and Grzesiek, S. (1999) J. Am. Chem. Soc., 121, 6019-6027.
7. Fernández, C., Szyperski, T., Ono, A., Iwai, H., Tate, S., Kainosho, M. and Wüthrich, K. (1998) J. Biomol. NMR, 12, 25-37.
8. Fernández, C., Szyperski, T., Ono, A., Iwai, H., Tate, S., Kainosho, M. and Wüthrich, K. (1999) J. Mol. Biol., 292, 609-617.
9. Fraenkel, E. and Pabo, C.O. (1998) Nat. Struct. Biol., 5, 692-697.
10. Geen, H. and Freeman, R. (1991) J. Magn. Reson., 93, 93-141.
11. Hu, J.Z., Facelli, J.C., Alderman, D.W., Pugmire, R.J. and Grant, D.M. (1998) J. Am. Chem. Soc., 120, 9863-9869.
12. Kay, L.E., Keifer, P. and Saarinen, T. (1992) J. Am. Chem. Soc., 114, 10663-10665.
13. Kupče, E. and Freeman, R. (1996) J. Magn. Reson., A118, 299-303.
14. Kupče, E. and Wagner, G. (1995) J. Magn. Reson., B109, 329-333.
15. Kupče, E., Schmidt, P., Rance, M. and Wagner, G. (1998) J. Magn. Reson., 135, 361-367.
16. Levitt, M., Freeman, R. and Frenkiel, T. (1983) Adv. Magn. Reson., 11, 47-110.
17. Müller, M., Affolter, M., Leupin, W., Otting, G., Wüthrich, K. and Gehring, W.J. (1988) EMBO J., 7, 4299-4304.
18. Palmer III, A.G., Cavanagh, J., Wright, P.E. and Rance, M. (1991) J. Magn. Reson., 93, 151-170.
19. Pervushin, K., Riek, R., Wider, G. and Wüthrich, K. (1997) Proc. Natl. Acad. Sci. USA, 94, 12366-12371.
20. Pervushin, K., Riek, R., Wider, G. and Wüthrich, K. (1998a) J. Am. Chem. Soc., 120, 6394-6400.
21. Pervushin, K., Wider, G. and Wüthrich, K. (1998b) J. Biomol. NMR, 12, 345-348.
22. Pervushin, K., Ono, A., Fernández, C., Szyperski, T., Kainosho, M. and Wüthrich, K. (1998c) Proc. Natl. Acad. Sci. USA, 95, 14147-14151.
23. Pervushin, K., Riek, R., Wider, G. and Wüthrich, K. (1999) Proc. Natl. Acad. Sci. USA, 96, 9607-9612.
24. Piotto, M., Saudek, V. and Sklenar, V.J. (1992) J. Biomol. NMR, 2, 661-665.
25. Qian, Y.Q., Otting, G. and Wüthrich, K. (1993) J. Am. Chem. Soc., 115, 1189-1190.
26. Ramamoorthy, A., Wu, C.H. and Opella, S.J. (1997) J. Am. Chem. Soc., 119, 10479-10486.
27. Sørensen, O.W., Eich, G.W., Levitt, M.H., Bodenhausen, G. and Ernst, R.R. (1983) Progr. NMR Spectrosc., 16, 163-192.
28. Szyperski, T., Güntert, P., Otting, G. and Wüthrich, K. (1992) J. Magn. Reson., 99, 552-560.
29. Szyperski, T., Ono, A., Fernández, C., Kainosho, M. and Wüthrich, K. (1998) J. Am. Chem. Soc., 120, 821-822.