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Volumn 290, Issue 5, 1999, Pages 905-915

Binding of the bacteriophage T4 transcriptional activator, MotA, to T4 middle promoter DNA: Evidence for both major and minor groove contacts

Author keywords

Activation; AsiA; Bacteriophage; MotA; Transcription

Indexed keywords

ADENINE; BACTERIAL DNA; DNA BINDING PROTEIN; GUANINE; METHYL GROUP; SIGMA FACTOR; THYMINE; TRANSACTIVATOR PROTEIN;

EID: 0033618319     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.2928     Document Type: Article
Times cited : (24)

References (42)
  • 2
    • 0032418732 scopus 로고    scopus 로고
    • Stimulation of bacteriophage T4 middle transcription by the T4 proteins MotA and AsiA occurs at two distinct steps in the transcription cycle
    • Adelman K., Brody E. N., Buckle M. Stimulation of bacteriophage T4 middle transcription by the T4 proteins MotA and AsiA occurs at two distinct steps in the transcription cycle. Proc. Natl Acad. Sci. USA. 95:1998;15247-15252.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 15247-15252
    • Adelman, K.1    Brody, E.N.2    Buckle, M.3
  • 3
    • 0001970325 scopus 로고
    • Regulation of transcription of prereplicative genes
    • C. K. Mathews, E. Kutter, G. Mosig, & P. B. Berget. Washington: American Society for Microbiology
    • Brody E., Rabussay D., Hall D. H. Regulation of transcription of prereplicative genes. Mathews C. K., Kutter E., Mosig G., Berget P. B. Bacteriophage T4. 1983;174-183 American Society for Microbiology, Washington.
    • (1983) Bacteriophage T4 , pp. 174-183
    • Brody, E.1    Rabussay, D.2    Hall, D.H.3
  • 4
    • 0028061282 scopus 로고
    • Promoter structure, promoter recognition, and transcription activation in prokaryotes
    • Busby S., Ebright R. Promoter structure, promoter recognition, and transcription activation in prokaryotes. Cell. 79:1994;743-746.
    • (1994) Cell , vol.79 , pp. 743-746
    • Busby, S.1    Ebright, R.2
  • 5
    • 0023955176 scopus 로고
    • Gel retardation at low pH resolves trp repressor-DNA complexes for quantitative study
    • Carey J. Gel retardation at low pH resolves trp repressor-DNA complexes for quantitative study. Proc. Natl Acad. Sci. USA. 85:1988;975-979.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 975-979
    • Carey, J.1
  • 6
    • 0026346185 scopus 로고
    • Gel retardation
    • Carey J. Gel retardation. Methods Enzymol. 208:1991;103-117.
    • (1991) Methods Enzymol. , vol.208 , pp. 103-117
    • Carey, J.1
  • 7
    • 0001168542 scopus 로고
    • Restriction and modification
    • J. D. Karam, J. W. Drake, G. Mosig, D. H. Hall, F. A. Eiserling, L. W. Black, E. K. Spicer, E. Kutter, K. Carlson, & E. S. Miller. Washington: American Society for Microbiology
    • Carlson K., Raleigh E. A., Hattman S. Restriction and modification. Karam J. D., Drake J. W., Mosig G., Hall D. H., Eiserling F. A., Black L. W., Spicer E. K., Kutter E., Carlson K., Miller E. S. Molecular Biology of Bacteriophage T4. 1994;369-381 American Society for Microbiology, Washington.
    • (1994) Molecular Biology of Bacteriophage T4 , pp. 369-381
    • Carlson, K.1    Raleigh, E.A.2    Hattman, S.3
  • 8
    • 0032492719 scopus 로고    scopus 로고
    • The MotA transcriptional activator of bacteriophage T4 binds to its specific DNA site as a monomer
    • Cicero M. P., Alexander K. A., Kreuzer K. N. The MotA transcriptional activator of bacteriophage T4 binds to its specific DNA site as a monomer. Biochemistry. 37:1998;4977-4984.
    • (1998) Biochemistry , vol.37 , pp. 4977-4984
    • Cicero, M.P.1    Alexander, K.A.2    Kreuzer, K.N.3
  • 11
    • 0028000270 scopus 로고
    • The DNA-binding domain of the MotA transcription factor from bacteriophage T4 shows structural similarity to the TATA-binding protein
    • Finnin M. S., Hoffman D. W., White S. W. The DNA-binding domain of the MotA transcription factor from bacteriophage T4 shows structural similarity to the TATA-binding protein. Proc. Natl Acad. Sci. USA. 91:1994;10972-10976.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 10972-10976
    • Finnin, M.S.1    Hoffman, D.W.2    White, S.W.3
  • 12
    • 0024240952 scopus 로고
    • Analysis of the recognition mechanism involved in the EcoRV catalyzed cleavage of DNA using modified oligodeoxynucleotides
    • Fliess A., Wolfes H., Seela F., Pingoud A. Analysis of the recognition mechanism involved in the EcoRV catalyzed cleavage of DNA using modified oligodeoxynucleotides. Nucl. Acids Res. 16:1988;11781-11793.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 11781-11793
    • Fliess, A.1    Wolfes, H.2    Seela, F.3    Pingoud, A.4
  • 13
    • 0029910511 scopus 로고    scopus 로고
    • An N-terminal mutation in the bacteriophage T4 motA gene yields a protein that binds DNA but is defective for activation of transcription
    • Gerber J. S., Hinton D. M. An N-terminal mutation in the bacteriophage T4 motA gene yields a protein that binds DNA but is defective for activation of transcription. J. Bacteriol. 178:1996;6133-6139.
    • (1996) J. Bacteriol. , vol.178 , pp. 6133-6139
    • Gerber, J.S.1    Hinton, D.M.2
  • 14
    • 0024292146 scopus 로고
    • Transcriptional activation of bacteriophage T4 middle promoters by the motA protein
    • Guild N., Gayle M., Sweeney T., Hollingsworth T., Modeer T., Gold L. Transcriptional activation of bacteriophage T4 middle promoters by the motA protein. J. Mol. Biol. 199:1988;241-258.
    • (1988) J. Mol. Biol. , vol.199 , pp. 241-258
    • Guild, N.1    Gayle, M.2    Sweeney, T.3    Hollingsworth, T.4    Modeer, T.5    Gold, L.6
  • 15
    • 1842271665 scopus 로고
    • A dimer of AraC protein contacts three adjacent major groove regions at the Ara I DNA site
    • Hendrickson W., Schleif R. A dimer of AraC protein contacts three adjacent major groove regions at the Ara I DNA site. Proc. Natl Acad. Sci. USA. 82:1985;3129-3133.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 3129-3133
    • Hendrickson, W.1    Schleif, R.2
  • 16
    • 0025990737 scopus 로고
    • Transcription from a bacteriophage T4 middle promoter using T4 motA protein and phage-modified RNA polymerase
    • Hinton D. M. Transcription from a bacteriophage T4 middle promoter using T4 motA protein and phage-modified RNA polymerase. J. Biol. Chem. 266:1991;18034-18044.
    • (1991) J. Biol. Chem. , vol.266 , pp. 18034-18044
    • Hinton, D.M.1
  • 18
    • 0029834729 scopus 로고    scopus 로고
    • The bacteriophage T4 middle transcription system: T4-modified RNA polymerase, AsiA (Sigma-70 binding protein), and the transcriptional activator MotA
    • Hinton D. M., March-Amegadzie R., Gerber J., Sharma M. The bacteriophage T4 middle transcription system: T4-modified RNA polymerase, AsiA (Sigma-70 binding protein), and the transcriptional activator MotA. Methods Enzymol. 274:1996b;43-57.
    • (1996) Methods Enzymol. , vol.274 , pp. 43-57
    • Hinton, D.M.1    March-Amegadzie, R.2    Gerber, J.3    Sharma, M.4
  • 19
    • 0032489504 scopus 로고    scopus 로고
    • Protein-protein contacts that activate and repress transcription
    • Hochschild A., Dove S. L. Protein-protein contacts that activate and repress transcription. Cell. 92:1998;597-600.
    • (1998) Cell , vol.92 , pp. 597-600
    • Hochschild, A.1    Dove, S.L.2
  • 20
    • 0027483012 scopus 로고
    • Co- crystal structure of TBP recognizing the minor groove of a TATA element
    • Kim J. L., Nikolov D. B., Burley S. K. Co- crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365:1993;520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.L.1    Nikolov, D.B.2    Burley, S.K.3
  • 21
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Kim Y., Geiger J. H., Hahn S., Sigler P. B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993;512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Sigler, P.B.4
  • 22
    • 0026337044 scopus 로고
    • Interaction of TFIID in the minor groove of the TATA element
    • Lee D. K., Horikoshi M., Roeder R. G. Interaction of TFIID in the minor groove of the TATA element. Cell. 67:1991;1241-1250.
    • (1991) Cell , vol.67 , pp. 1241-1250
    • Lee, D.K.1    Horikoshi, M.2    Roeder, R.G.3
  • 23
    • 0028914875 scopus 로고
    • uvsX: Analysis of regions important for binding of the T4 transcriptional activator MotA and for activation of transcription
    • uvsX: analysis of regions important for binding of the T4 transcriptional activator MotA and for activation of transcription. Mol. Microbiol. 15:1995;649-660.
    • (1995) Mol. Microbiol. , vol.15 , pp. 649-660
    • March-Amegadzie, R.1    Hinton, D.M.2
  • 24
    • 0033593502 scopus 로고    scopus 로고
    • The bacteriophage T4 transcriptional activator MotA accepts various base pair changes within its binding sequence
    • Marshall P., Sharma M., Hinton D. M. The bacteriophage T4 transcriptional activator MotA accepts various base pair changes within its binding sequence. J. Mol. Biol. 285:1999;931-944.
    • (1999) J. Mol. Biol. , vol.285 , pp. 931-944
    • Marshall, P.1    Sharma, M.2    Hinton, D.M.3
  • 25
    • 0027314423 scopus 로고
    • Tests of a model for promoter recognition by T7 RNA polymerase: Thymine methyl group contacts
    • Maslak M., Jaworski M. D., Martin C. T. Tests of a model for promoter recognition by T7 RNA polymerase: thymine methyl group contacts. Biochemistry, 32:1993;4270-4274.
    • (1993) Biochemistry , vol.32 , pp. 4270-4274
    • Maslak, M.1    Jaworski, M.D.2    Martin, C.T.3
  • 26
    • 0016341886 scopus 로고
    • Mutant of bacteriophage T4D affecting expression of many early genes
    • Mattson T., Richardson J., Goodin D. Mutant of bacteriophage T4D affecting expression of many early genes. Nature. 250:1974;48-50.
    • (1974) Nature , vol.250 , pp. 48-50
    • Mattson, T.1    Richardson, J.2    Goodin, D.3
  • 27
    • 0027463770 scopus 로고
    • Location of close contacts between Escherichia coli RNA polymerase and guanine residues either with or without -35 region sequences
    • Minchin S., Busby S. Location of close contacts between Escherichia coli RNA polymerase and guanine residues either with or without -35 region sequences. Biochem J. 289:1993;771-775.
    • (1993) Biochem J. , vol.289 , pp. 771-775
    • Minchin, S.1    Busby, S.2
  • 28
    • 0024658026 scopus 로고
    • A new early gene upstream of the middle gene 31 in bacteriophage T4: Cloning and expression
    • Nivinskas R. G., Raudonikiene A., Guild N. A new early gene upstream of the middle gene 31 in bacteriophage T4: cloning and expression. Mol. Biol. (Moscow). 23:1989;739-749.
    • (1989) Mol. Biol. (Moscow) , vol.23 , pp. 739-749
    • Nivinskas, R.G.1    Raudonikiene, A.2    Guild, N.3
  • 29
    • 0028925747 scopus 로고
    • Bacteriophage T4 MotA and AsiA proteins suffice to direct Escherichia coli RNA polymerase to initiate transcription at T4 middle promoters
    • Ouhammouch M., Adelman K., Harvey S. R., Orsini G., Brody E. N. Bacteriophage T4 MotA and AsiA proteins suffice to direct Escherichia coli RNA polymerase to initiate transcription at T4 middle promoters. Proc. Natl Acad. Sci. USA. 92:1995;1415-1419.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 1415-1419
    • Ouhammouch, M.1    Adelman, K.2    Harvey, S.R.3    Orsini, G.4    Brody, E.N.5
  • 30
    • 0027196294 scopus 로고
    • Identification of specific contacts in T3 RNA polymerase-promoter interactions: Kinetic analysis using small synthetic promoters
    • Schick C., Martin C. T. Identification of specific contacts in T3 RNA polymerase-promoter interactions: kinetic analysis using small synthetic promoters. Biochem. 32:1993;4275-4280.
    • (1993) Biochem. , vol.32 , pp. 4275-4280
    • Schick, C.1    Martin, C.T.2
  • 31
    • 0026725773 scopus 로고
    • Purified motA protein binds the -30 region of a bacteriophage T4 middle-mode promoter and activates transcription in vitro
    • Schmidt R. P., Kreuzer K. N. Purified motA protein binds the -30 region of a bacteriophage T4 middle-mode promoter and activates transcription in vitro. J. Biol. Chem. 267:1992;11399-11407.
    • (1992) J. Biol. Chem. , vol.267 , pp. 11399-11407
    • Schmidt, R.P.1    Kreuzer, K.N.2
  • 32
    • 0032568924 scopus 로고    scopus 로고
    • Expressed protein ligation, a novel method for studying protein-protein interactions in transcription
    • Severinov K., Muir T. M. Expressed protein ligation, a novel method for studying protein-protein interactions in transcription. J. Biol. Chem. 273:1998;16205-16209.
    • (1998) J. Biol. Chem. , vol.273 , pp. 16205-16209
    • Severinov, K.1    Muir, T.M.2
  • 34
    • 0010291050 scopus 로고
    • Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7
    • Siebenlist U., Gilbert W. Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7. Proc. Natl Acad. Sci. USA. 77:1980;122-126.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 122-126
    • Siebenlist, U.1    Gilbert, W.2
  • 35
    • 0018867360 scopus 로고
    • E. coli RNA polymerase interacts homologously with two different promoters
    • Siebenlist U., Simpson R. B., Gilbert W. E. coli RNA polymerase interacts homologously with two different promoters. Cell. 20:1980;269-281.
    • (1980) Cell , vol.20 , pp. 269-281
    • Siebenlist, U.1    Simpson, R.B.2    Gilbert, W.3
  • 36
    • 0345443002 scopus 로고
    • Evidence for close contacts between RNA polymerase and promoter DNA
    • R. Rodriguez, & M. Chamberlin. New York: Praeger ScientificPraeger Publishers
    • Simpson R. B. Evidence for close contacts between RNA polymerase and promoter DNA. Rodriguez R., Chamberlin M. Promoters: Structure and Function. 1982;164-180 Praeger ScientificPraeger Publishers, New York.
    • (1982) Promoters: Structure and Function , pp. 164-180
    • Simpson, R.B.1
  • 37
    • 0026325168 scopus 로고
    • TFIID binds in the minor groove of the TATA box
    • Starr D. B., Hawley D. K. TFIID binds in the minor groove of the TATA box. Cell. 67:1991;1231-1240.
    • (1991) Cell , vol.67 , pp. 1231-1240
    • Starr, D.B.1    Hawley, D.K.2
  • 38
    • 0001889641 scopus 로고
    • A salt-promoted inhibitor of RNA polymerase isolated form T4 phage-infected E. coli
    • Chamberlin Losick. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
    • Stevens A. A salt-promoted inhibitor of RNA polymerase isolated form T4 phage-infected E. coli. Losick Chamberlin. RNA Polymerase. 1976;617-627 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
    • (1976) RNA Polymerase , pp. 617-627
    • Stevens, A.1
  • 39
    • 0016752445 scopus 로고
    • Characterization of an inhibitor causing potassium chloride sensitivity of an RNA polymerase from T4 phage-infected Escherichia coli
    • Stevens A., Rhoton J. C. Characterization of an inhibitor causing potassium chloride sensitivity of an RNA polymerase from T4 phage-infected Escherichia coli. Biochemistry. 14:1975;5074-5079.
    • (1975) Biochemistry , vol.14 , pp. 5074-5079
    • Stevens, A.1    Rhoton, J.C.2
  • 40
    • 0002045328 scopus 로고
    • Regulation of middle-mode transcription
    • J. D. Karam, J. W. Drake, G. Mosig, D. H. Hall, F. A. Eiserling, L. W. Black, E. K. Spicer, E. Kutter, K. Carlson, & E. S. Miller. Washington: American Society for Microbiology
    • Stitt B., Hinton D. Regulation of middle-mode transcription. Karam J. D., Drake J. W., Mosig G., Hall D. H., Eiserling F. A., Black L. W., Spicer E. K., Kutter E., Carlson K., Miller E. S. Molecular Biology of Bacteriophage T4. 1994;142-160 American Society for Microbiology, Washington.
    • (1994) Molecular Biology of Bacteriophage T4 , pp. 142-160
    • Stitt, B.1    Hinton, D.2
  • 41
    • 0032502998 scopus 로고    scopus 로고
    • The arginine repressor of Escherichia coli K-12 makes direct contacts to minor and major groove determinants of the operators
    • Wang H., Glansdorff N., Charlier D. The arginine repressor of Escherichia coli K-12 makes direct contacts to minor and major groove determinants of the operators. J. Mol. Biol. 277:1998;805-824.
    • (1998) J. Mol. Biol. , vol.277 , pp. 805-824
    • Wang, H.1    Glansdorff, N.2    Charlier, D.3
  • 42
    • 0025880536 scopus 로고
    • Enhancement of transcription termination factor rho activity with potassium glutamate
    • Zou L., Richardson J. P. Enhancement of transcription termination factor rho activity with potassium glutamate. J. Biol. Chem. 266:1991;10201-10209.
    • (1991) J. Biol. Chem. , vol.266 , pp. 10201-10209
    • Zou, L.1    Richardson, J.P.2


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