Method revealing latent periodicity of the nucleotide sequences modified for a case of small samples

DNA Research

Volumn 6, Issue 3, 1999, Pages 153-163

  Chalky, Maria B ^a   Korotkov, Eugene V ^a   Skryabin, Konstantin G ^a  

^a RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

Computer sequence analysis; Gene structure; Latent periodicity; Protein structure; Relationship between gene and protein structures

Indexed keywords

ARTICLE; BIOLOGY; GENETICS; MOLECULAR GENETICS; MONTE CARLO METHOD; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; COMPUTATIONAL BIOLOGY; MOLECULAR SEQUENCE DATA; MONTE CARLO METHOD;

EID: 0033617810     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/6.3.153     Document Type: Article

References (8)

1. Cheever, E. A., Overton, G. C., and Searls, B. B. 1991, Fast fourier transform-based correlations of DNA sequences using complex plane encoding, CABIOS, 7, 143-154.
2. Heringa, J. and Argos, P. 1993, A method to recognize distant repeats in protein sequences, Proteins, 17, 391-411.
3. McLachlan, A. D. 1993, Multichannel fourier analysis of patterns in protein sequences, J. Phys. Chem., 97, 3000-3009.
4. Benson, G. and Waterman, M. S. 1994, A method for fast database search for all k-nucleotide repeats, Nucleic Acids Res., 22, 4228-4836.
5. Chechetkin, V. R., Knizhnikova, L. A., and Turygin, A. Yu. 1994, Three-quasiperiodicity, mutual correlations, ordering and long modulations in genomic nucleotide sequences of viruses, J. Biomol. Str. and Dyn., 12, 271-299.
6. Benson, G. 1997, Sequence alignment with tandem duplication, J. Comput. Biol., 4, 351-367.
7. Korotkov, E. V. and Korotkova, M. A. 1995, Latent periodicity of some human gene DNA sequences, DNA Seq., 5, 353-358.
8. Korotkov, E. V., Korotkova, M. A., and Tulko, J. S. 1997, Latent sequence periodicity of some oncogenes and DNA-binding protein genes, CABIOS, 13, 37-44.