Thermodynamic analysis of the structural stability of phage 434 Cro protein

Biochemistry

Volumn 38, Issue 47, 1999, Pages 15536-15547

  Padmanabhan, S ^a   Laurents, D V ^a   Fernandez A M ^b   Elias Arnanz, M ^c   Ruiz Sanz, J ^b   Mateo, P L ^b   Rico, M ^a   Filimonov, V V ^b,d  

^a INSTITUTO DE ESTRUCTURA DE LA MATERIA   (Spain)

^b UNIVERSITY OF GRANADA   (Spain)

^c UNIVERSITY OF MURCIA   (Spain)

^d INSTITUTE OF PROTEIN RESEARCH   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

ARTICLE; BACTERIOPHAGE; CIRCULAR DICHROISM; DIFFERENTIAL SCANNING CALORIMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE; THERMODYNAMICS;

BACTERIOPHAGE LAMBDA; CALORIMETRY, DIFFERENTIAL SCANNING; CIRCULAR DICHROISM; COLIPHAGES; DNA-BINDING PROTEINS; HYDROGEN-ION CONCENTRATION; MODELS, CHEMICAL; PEPTIDE FRAGMENTS; PROTEIN DENATURATION; PROTEIN FOLDING; REPRESSOR PROTEINS; THERMODYNAMICS; UREA; VIRAL PROTEINS;

BACTERIOPHAGE 434; BACTERIOPHAGE LAMBDA;

EID: 0033598768     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991757+     Document Type: Article

References (59)

1. Schellman, J. A. (1987) Annu. Rev. Biophys. Biophys. Chem. 16, 115-137.
2. Santoro, M. M., and Bolen, D. W. (1992) Biochemistry 31, 4901-4907.
3. Tanford, C. (1970) Adv. Protein Chem. 21, 1-95.
4. Makhatadze, G. I., and Privalov, P. L. (1992) J. Mol. Biol. 226, 491-505.
5. Pace, C. N., and Laurents, D. V. (1989) Biochemistry 28, 2520-2525.
6. Swint, L., and Robertson, A. D. (1993) Protein Sci. 2, 2037-2049.
7. Scholtz, J. M. (1995) Protein Sci. 4, 35-43.
8. Agashe, V. R., and Udgaonkar, J. (1995) Biochemistry 34, 3286-3299.
9. Huang, G. S., and Oas, T. G. (1996) Biochemistry 35, 6173-6180.
10. McCrary, B. S., Edmondson, S. P., and Shriver, J. W. (1996) J. Mol. Biol. 264, 784-805.
11. Yi, Q., Scalley, M. L., Simons, K. T., Gladwin, S. T., and Baker, D. (1997) Folding Des. 2, 271-280.
12. Kuhlman, B., and Raleigh, D. P. (1998) Protein Sci. 7, 2405-2412.
13. Ptashne, M. (1986) A Genetic Switch: Gene control and phage λ, Cell Press and Blackwell Scientific Publications, Cambridge, MA.
14. Mondragon, A., Wolberger, C., and Harrison, S. C. (1989) J. Mol. Biol. 205, 179-188.
15. Padmanabhan, S., Jiménez, M. A., González, C., Sanz, J. M., Giménez-Gallego, G., and Rico, M. (1997) Biochemistry 36, 6424-6436.
16. Mondragon, A., Subbiah, S., Almo, S. C., Drottar, M., and Harrison, S. C. (1989) J. Mol. Biol. 205, 189-200.
17. Neri, D., Billeter, M., and Wüthrich, K. (1992) J. Mol. Biol. 223, 743-767.
18. Huang, G. S., and Oas, T. G. (1995) Biochemistry 34, 3884-3892.
19. Ruiz-Sanz, J., Simonscits, A., Törö, I., Pongor, S., Mateo, P. L., and Filimonov, V. V. (1999) Eur. J. Biochem. 263, 246-253.
20. Studier, F. W., Rosenberg, A. H., Dunn, J. J., and Dubendorff, J. W. (1990) Methods Enzymol 185, 60-89.
21. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326.
22. Pace, C. N., Vajdos, F., Fee, L., Grimsley, G., and Gray, T. (1995) Protein Sci. 4, 2411-2423.
23. Pace, C. N., Shirley, B. A., and Thomson, J. A. (1990) in Protein Structure: A Practical Approach (Creighton, T. E., Ed.) pp 311-330, IRL Press, Oxford, England.
24. Viguera, A. R., Martínez, J. C., Filimonov, V. V., Mateo, P. L., and Serrano, L. (1994) Biochemistry 33, 2142-2150.
25. Martinez, J. C., Viguera, A. R., Serrano, L., Filimonov, V. V., and Mateo, P. L. (1998) React. Funct. Polym. 36, 221-225.
26. Filimonov, V. V., Azuaga, A. I., Viguera, A. R., Serrano, L., and Mateo, P. L. (1999) Biophys. Chem. 77, 195-208.
27. Izzat, R. M., and Christensen, J. J. (1968) Handbook of Biochemistry, Rubber Co., Cleveland, OH.
28. Pace, C. N. (1986) Methods Enzymol. 131, 266-280.
29. Becktel, W. J., and Schellman, J. A. (1987) Biopolymers 26, 1859-1877.
30. Privalov, P. L. (1990) Crit. Rev. Biochem. Mol. Biol. 25, 281-305.
31. Privalov, P. L., and Potekhin, S. A. (1986) Methods Enzymol. 131, 4-51.
32. Makhatadze, G. I., and Privalov, P. L. (1990) J. Mol. Biol. 213, 375-384.
33. Rohl, C. A., and Baldwin, R. L. (1997) Biochemistry 36, 8435-8442.
34. Chen, B., and Schellman, J. A. (1989) Biochemistry 28, 685-691.
35. Yao, M., and Bolen, D. W. (1995) Biochemistry 34, 3771-3781.
36. Alexander, P., Fahnestock, S., Lee, T., Orbn, J., and Bryan, P. (1992) Biochemistry 31, 3597-3603.
37. Martínez, J. C., El Harrous, M., Filimonov, V. V., Mateo, P. L., and Fersht, A. R. (1994) Biochemistry 33, 3919-3926.
38. Yu, Y., Makhadatze, G. I., Pace, C. N., and Privalov, P. L. (1994) Biochemistry 33, 3312-3319.
39. Swint-Kruse, L., and Robertson, A. D. (1995) Biochemistry 34, 4724-4732.
40. Privalov, P. L., Tiktopulo, E. I., Venyaminov, S. Y., Griko, Y. V., Makhadatze, G. I., and Khechinashvili, N. N. (1989) J. Mol. Biol. 205, 737-750.
41. Privalov, P. L. (1979) Adv. Protein Chem. 33, 167-241.
42. Gómez, J., and Friere, E. (1995) J. Mol. Biol. 252, 337-350.
43. Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148.
44. Scholtz, J. M., Barrick, D., York, E. J., Stewart, J. M., and Baldwin, R. L. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 185-189.
45. Johnson, C. M., and Fersht, A. R. (1995) Biochemistry 34, 6795-6804.
46. Oliveberg, M., Vuilleumier, S., and Fersht, A. R. (1994) Biochemistry 33, 8826-8832.
47. Pace, C. N., Grimsley, G. R., Thomas, S. T., and Makhadatze, G. I. (1999) Protein Sci. 8, 1500-1504.
48. Cohen, D. S., and Pielak, G. J. (1994) Protein Sci. 3, 1253-1260.
49. Schöppe, A., Hinz, H.-J., Agashe, V. R., Ramachandran, S., and Udgaonkar, J. B. (1997) Protein Sci. 6, 2196-2202.
50. Privalov, P. L., and Gill, S. (1988) Adv. Protein Chem. 39, 191-234.
51. Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Biochemistry 31, 3947-3955.
52. Murphy, K. P., and Friere, E. (1992) Adv. Protein Chem. 43, 313-361.
53. Creighton, T. E. (1993) in Proteins, W. H. Freeman and Co., New York.
54. Sauer, R. T., Jordan, S. R., and Pabo, C. O. (1990) Adv. Protein Chem. 40, 1-61.
55. Burton, R. E., Huang, G. S., Daugherty, M. A., Calderone, T. L., and Oas, T. G. (1997) Nat. Struct. Biol. 4, 305-310.
56. Padmanabhan, S., Jiménez, M. A., and Rico, M. (1999) Protein Sci. 8, 1675-1688.
57. Waldburger, C. D., Schildbach, J. F., and Sauer, R. T. (1995) Nat. Struct. Biol. 2, 122-128.
58. Parsell, D. A., and Sauer, R. T. (1989) J. Biol. Chem. 264, 7590-7595.
59. Jana, R., Hazbun, T. R., Mollah, A. K. M. M., and Mossing, M. C. (1997) J. Mol. Biol. 273, 402-416.