Crystal structures of Escherichia coli glycerol kinase variant S58→W in complex with nonhydrolyzable ATP analogues reveal a putative active conformation of the enzyme as a result of domain motion

Biochemistry

Volumn 38, Issue 12, 1999, Pages 3508-3518

  Bystrom, Cory E ^a,c   Pettigrew, Donald W ^b   Branchaud, Bruce P ^a   O'Brien, Patrick ^a   Remington, S James ^a  

^a UNIVERSITY OF OREGON   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

^c PFIZER INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; FRUCTOSE BISPHOSPHATASE; GLYCEROL KINASE;

ALLOSTERISM; ARTICLE; CRYSTAL STRUCTURE; ENZYME ACTIVITY; ENZYME INHIBITION; ENZYME STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN INTERACTION; STRUCTURE ANALYSIS;

ACTINS; ADENOSINE TRIPHOSPHATE; BINDING SITES; ENZYME INHIBITORS; ESCHERICHIA COLI; FRUCTOSEDIPHOSPHATES; GLYCEROL KINASE; HEXOKINASE; LIGANDS; MODELS, MOLECULAR; MUTAGENESIS; PROTEIN CONFORMATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0033596853     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982460z     Document Type: Article

References (60)

1. Freedberg, W. B., Kistler, W. S., and Lin, E. C. (1971) J. Bacteriol. 108, 137-144.
2. Zwaig, N., Kistler, W. S., and Lin, E. C. (1970) J. Bacteriol. 102, 753-759.
3. de Riel, J. K., and Paulus, H. (1978) Biochemistry 17, 5146-5150.
4. de Riel, J. K., and Paulus, H. (1978) Biochemistry 17, 5141-5145.
5. de Riel, J. K., and Paulus, H. (1978) Biochemistry 17, 1534-5140.
6. Novotny, M. J., Fredrickson, W. L., Waygood, E. B., and Saier, M. H. (1985) J. Bacteriol. 162, 810-816.
7. Pettigrew, D. W., Yu, G., and Liu, Y. (1990) Biochemistry 29, 8620-8627.
8. Thorner, J. W., and Paulus, H. (1973) J. Biol. Chem. 248, 3922-3932.
9. Monod, J., Wyman, J., and Changeaux, J. P. (1965) J. Mol. Biol. 12, 88-118.
10. Pettigrew, D. W., Meadow, N. D., Roseman, S., and Remington, S. J. (1998) Biochemistry 37, 4875-4883.
11. Hurley, J. H. (1996) Annu. Rev. Biophvs. Biomol. Struct. 25, 137-162.
12. Bennett, W. S., and Steitz, T. A. (1978) Proc. Natl. Acad. Sci. U.S.A. 75, 4848-4852.
13. Bennett, W. S., and Steitz, T. A. (1980) J. Mol. Biol. 140, 211-230.
14. Chick, J. K., Lindberg, U., and Schutt, C. E. (1996) J. Mol. Biol. 263, 607-623.
15. Harrison, W. (1984) Biopolymers 23, 2943-2949.
16. Tirion, M., and ben-Avraham, D. (1993) J. Mol. Biol. 230, 186-195.
17. Wriggers, W., and Schulten, K. (1997) Biophys. J. 73, 624-639.
18. Miki, M. (1991) Biochemistry 30, 10878-10884.
19. Pettigrew, D. W. (1986) Biochemistry 25, 4711-4718.
20. Pettigrew, D. P., Liu, W., Holmes, C., Meadow, N., and Roseman, S. (1996) J. Bacteriol 178, 2846-2852.
21. Pettigrew, D. W., Smith, G. B., Thomas, K. P., and Dodds, D. C. (1997) Arch. Biochem. Biophys. 349, 236-245.
22. Hurley, J. H., Faber, H. R., Worthylake, D., Meadow, N., Roseman, S., Pettigrew, D. W., and Remington, S. J. (1993) Science 259, 673-677.
23. Liu, W. Z., Faber, R., Feese, M., Remington, S. J., and Pettigrew. D. W. (1994) Biochemistry 33, 10120-10126.
24. Ormo, M., Bystrom, C. E., Pettigrew, D. W., and Remington, S. J. (1998) Biochemistry 37, 16565-16572.
25. Feese, M. D., Faber, R. H., Bystrom, C. E., Pettigrew, D. W., and Remington, S. J. (1998) Structure 6, 1407-1418.
26. Bystrom, C. E., Pettigrew, D., and Remington, S. J. (1997) Bioorg. Med. Chem. Lett. 7, 2613-2616.
27. Faber, R., Pettigrew, D. W., and Remington, S. J. (1989) J. Mol. Biol. 207, 637-639.
28. Matthews, B. W. (1968) J. Mol. Biol. 33, 491-497.
29. Howard, A. J., Nielsen, C., and Xuong, N. H. (1985) Methods Enzymol. 114, 542-471.
30. Tronrud, D. E. (1992) Acta Crystallogr. A48, 912-916.
31. CCP4 (1994) Acta Cyrstallogr. D50, 760-763.
32. Brunger, A. T. (1992) Yale University Press, New Haven, CT.
33. Navaza, J. (1994) Acta Crystallogr. A50, 238-291.
34. Jones, T. A., Zou, J. Y., Cowan, S. J., and Kjeldgaard, M. (1991) Acta Crystallogr. A47, 110-119.
35. Wriggers, W., and Schulten, K. (1997) Proteins: Struct., Funct., Genet. 29, 1-14.
36. Zhang, C. X.-J., and Matthews, B. W. (1995) J. Appl. Crystallogr. 28, 624-630.
37. Lakowski, R. A. (1995) J. Mol. Graph. 13, 323-330.
38. Diederichs, K. (1995) Proteins: Struct., Funct., Genet. 23, 187-195.
39. Page, R., Lindberg, U., and Schutt, C. E. (1998) J. Mol. Biol. 280, 463-474.
40. Korn, A. P., and Rose, D. R. (1994) Protein Eng. 7, 961-967.
41. Gerstein, M., Lesk, A. M., and Chothia, C. (1994) Biochemistry 33, 6739-6749.
42. Steitz, T. A., Shosham, M., and Bennett, W. S. (1981) Philos. Trans. R. Soc. London B 293, 43-52.
43. Anderson, C. M., Stenkamp, R. E., McDonald, R. C., and Steitz, T. A. (1978) J. Mol. Biol. 123, 15-33.
44. Anderson, C. M., Stenkamp, R. E., McDonald, R. C., and Steitz, T. A. (1978) J. Mol. Biol. 123, 207-219.
45. McDonald, R. C., Steitz, T. A., and Engelman, D. M. (1979) Biochemistry 18, 338-342.
46. Lesk, A. M., and Chothia, C. (1984) J. Mol. Biol. 174, 175-191.
47. Schutt, C. E., Lindberg, U., Myslik, J., and Strauss, N. (1993) Nature 365, 810-816.
48. Blattner, W. A., and Knowles, J. (1979) Biochemistry 18, 3927-3933.
49. Flaherty, K. M., Wilbanks, S. M., DeLuca-Flaherty, C., and McKay, D. B. (1994) J. Biol. Chem. 269, 12899-12907.
50. Yount, R. G., Babcock, D., Ballantyne, W., and Ojala, D. (1971) Biochemistry 10, 2484-2489.
51. Blackburn, G. M. (1981) Chem. Ind. 134-138.
52. Thatcher, G. R., and Campbell, A. S. (1993) J. Org. Chem. 58, 2272-2281.
53. Schlauderer, G. J., Proba, K., and Schulz, G. E. (1996) J. Mol. Biol. 256, 223-227.
54. Blackburn, G. M., England, D. A., and Kolkmann, F. (1981) J. Chem. Soc., Chem. Commun. 18, 1188-1190.
55. Blackburn, G. M., England, D. A., and Kolkmann, F. (1981) J. Chem. Soc., Chem. Commun. 17, 930-932.
56. Blackburn, G. M., Kent, D. E., and Kolkmann, F. (1984) J. Chem. Soc., Perkin Trans. 1, 1118-1122.
57. Jardetzky, O. (1996) Prog. Biophys. Mol. Biol. 65, 171-219.
58. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
59. Ferrin, T. E., Huang, C. C., Jarvis, L. E., and Langridge, R. (1988) J. Mol. Graphics 6, 13-27.
60. Huang, C. C., Pettersen, E. F., Klein, T. E., Ferrin, T. E., and Langridge, R. (1991) J. Mol. Graphics 9, 230-236.