Cytidine deaminases from B. subtilis and E. coli: Compensating effects of changing zinc coordination and quaternary structure

Biochemistry

Volumn 38, Issue 38, 1999, Pages 12258-12265

  Carlow, Dean C ^a   Carter Jr , Charles W ^a   Mejlhede, Nina ^b   Neuhard, Jan ^b   Wolfenden, Richard ^a  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

3,4 DIHYDROURIDINE; 3,4 DIHYDROZEBULARINE; 3,4,5,6 TETRAHYDROZEBULARINE; 5 FLUOROZEBULARINE; CYTIDINE DEAMINASE; ENZYME INHIBITOR; TETRAHYDROURIDINE; UNCLASSIFIED DRUG; ZEBULARINE; ZINC;

ANIMAL CELL; ARTICLE; BACILLUS SUBTILIS; BINDING AFFINITY; ENZYME ACTIVE SITE; ENZYME STRUCTURE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN QUATERNARY STRUCTURE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

AMINO ACID SEQUENCE; BACILLUS SUBTILIS; BINDING SITES; CYSTEINE; CYTIDINE DEAMINASE; ENZYME INHIBITORS; ESCHERICHIA COLI; HYDROGEN-ION CONCENTRATION; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PYRIMIDINE NUCLEOSIDES; ZINC;

EID: 0033592308     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi990819t     Document Type: Article

References (28)

1. Yang, C., Carlow, D., Wolfenden, R., and Short, S. A. (1992) Biochemistry 31, 4168-4174.
2. Betts, L., Xiang, S., Short, S. A., Wolfenden, R., and Carter, C. C. (1994) J. Mol. Biol. 235, 635-656.
3. Carlow, D. C., Smith, A. A., Yang, C. C., Short, S. A., and Wolfenden, R. (1995) Biochemistry 34, 4220-4224.
4. Smith, A. A., Carlow, D. C., Short, S. A., and Wolfenden, R (1994) Biochemistry 33, 6468-6474.
5. Vallee, B. L., and Auld, D. S. (1990) Biochemistry 29, 5467-5659.
6. Lipscomb, W. N., and Sträter, N. (1996) Chem. Rev. 96, 2375-2433.
7. Navaratnam, N., Morrison, J. R., Bhattacharya, S., Patel, P., Fanahashi, T., Giannoni, F., Teng, B. B., Davidson, N. O., and Scott, J. (1993) J. Biol. Chem. 268, 20709-20715.
8. Song, B. H., and Neuhard, J. (1989) Mol. Gen. Genet. 216, 462-468.
9. Laliberté, J., and Momparler, R. L. (1994) Cancer Res. 54, 5401-5410.
10. Vincenzetti, S., Cambi, A., Neuhard, J., Garattini, E., and Vita, A. (1996) Protein Expression Purif. 8, 247-257.
11. Miller, J. (1972) Experiments in Molecular Genetics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
12. Hanze, A. R. (1967) J. Am. Chem. Soc. 89, 6720-6727.
13. Carlow, D. C., Short, S. A., and Wolfenden, R. (1996) Biochemistry 35, 948-954.
14. Cohen, R. M., and Wolfenden, R. (1971) J. Biol. Chem. 246, 7561-7565.
15. Holmquist, B. (1988) Methods Enzymol. 158, 6-12.
16. Theirs, R. E. (1957) Methods Biochem. Anal. 5, 273-577.
17. Auld, D. S. (1988) Methods Enzymol. 158, 13-14.
18. Beaven, G. H., Holiday, E. R., and Johnson, E. A. (1995) The Nucleic Acids (Chargaff, E., and Davidson, J. N., Eds.) Vol. 1, pp 493-554, Academic Press, New York.
19. Frick, L., Yang, C., Marquez, V. E., and Wolfenden, R. (1989) Biochemistry 28, 9423-9430.
20. Peariso et al. (1998) J. Am. Chem. Soc. 120, 8410.
21. Bertini, I., Luchinat, C., Rosi, M., Sgamellotti, A., and Tarantelli, F. (1990) Inorg. Chem. 29, 1460-1463.
22. Keifer, L. L., and Fierke, C. A. (1994) Biochemistry 33, 15233-15240.
23. Christianson, D. W., and Fierke, C. A. (1996) Acc. Chem. Res. 29, 331-339.
24. Ippolito, J. A., and Christianson, D. W. (1994) Biochemistry 33, 15241-15249.
25. Frick, L., MacNeela, J. P., and Wolfenden, R. (1987) Bioorg. Chem. 15, 100-108.
26. Carter, C. W., Kraut, J., Freer, S. T., and Alden, R. A. (1974) J. Biol. Chem. 249, 6339-6346.
27. Carter, C. W. (1977) in Iron-Sulfur Proteins, Vol. III, pp 157-204, Academic Press, New York.
28. Xiang, S., Short, S. A., Wolfenden, R., and Carter, C. W., Jr. (1997) Biochemistry 36, 4678-4774.