YAC fragmentation with repetitive and single-copy sequences: Detailed physical mapping of the presenilin 1 gene on chromosome 14

Gene

Volumn 229, Issue 1-2, 1999, Pages 193-201

  Del Favero, Jurgen ^a   Goossens, Dirk ^a   Van Den Bossche, Dirk ^a   Van Broeckhoven, Christine ^b  

^a Lab Psychogenetics Flanders I   (Belgium)

^b DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

Author keywords

(A)centric fragmentation; Alu consensus; Dinucleotide repeat; Gene structure

Indexed keywords

COMPLEMENTARY DNA; PRESENILIN 1;

ALZHEIMER DISEASE; ARTICLE; CHROMOSOME 14; DINUCLEOTIDE REPEAT; EXON; GENE MAPPING; GENE STRUCTURE; NEUROLOGIC DISEASE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; YEAST ARTIFICIAL CHROMOSOME;

ALU ELEMENTS; ALZHEIMER DISEASE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, YEAST; CHROMOSOMES, HUMAN, PAIR 14; ELECTROPHORESIS, GEL, PULSED-FIELD; GENETIC MARKERS; HUMANS; MEMBRANE PROTEINS; MICROSATELLITE REPEATS; PHYSICAL CHROMOSOME MAPPING; PRESENILIN-1;

EID: 0033580459     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00023-2     Document Type: Article

References (30)

1. Batzer M., Alegria-Hartman M., Deininger P. A consensus Alu repeat probe for physical mapping. Genet. Anal. Tech. Appl. 11:1994;34-38.
2. Chumakov I., et al. A YAC contig map of the human genome. Nature. 377:1995;175-298.
3. Clark R.F., Cruts M., Korenblat K.M., He C., Talbot C., Van Broeckhoven C., Goate A.M. A yeast artificial chromosome contig from human chromosome 14q24 spanning the Alzheimer's disease locus AD3. Hum. Mol. Genet. 4:1995;1347-1354.
4. Clark R., et al. The structure of the Presenilin 1 (S182) gene and identification of six novel mutations in early onset AD families. Nat. Genet. 11:1995;219-222.
5. Cook G.P., Tomilinson I.M. High resolution restriction mapping of YACs using chromosome fragmentation. Nucleic Acids Res. 24:1996;1585-1586.
6. Cruts M., Backhovens H., Wang S.-Y., Van Gassen G., Theuns J., De Jonghe C., Wehnert A., De Voecht J., De Winter G., Cras P., Bruyland M., Datson N., Weissenbach J., Den Dunnen J., Martin J.-J., Hendriks L., Van Broeckhoven C. Molecular genetic analysis of familial early-onset Alzheimer's disease linked to chromosome 14q24.3. Hum. Mol. Genet. 4:1995;2363-2371.
7. Cruts M., Van Broeckhoven C. Presenilin mutations in Alzheimer's disease. Hum. Mutat. 11:1998;183-190.
8. Cruts M., et al. Genetic and physical characterization of the early-onset Alzheimer's disease AD3 locus on chromosome 14q24.3. Hum. Mol. Genet. 4:1995;1355-1364.
9. Cruts M., et al. Estimation of the genetic contribution of presenilin-1 and -2 mutations in a population-based study of presenile Alzheimer disease. Hum. Mol. Genet. 7:1998;43-51.
10. Deininger P., Jolly D., Rubin C., Friedman T., Schmid C. Base sequence studies of 300 nucleotide renatured repeated human DNA clones. J. Mol. Biol. 151:1981;17-33.
11. Emanuel S., Cook J., O'Rear J., Rothstein R., Pestka S. New vectors for manipulation and selection of functional yeast artificial chromosomes (YACs) containing human DNA inserts. Gene. 155:1995;167-174.
12. Gietz D., St Jean A., Woods R., Schiestl R. Improved method for high efficiency transformation of intact yeast cells. Nucleic Acid Res. 20:1992;1425-1428.
13. Heus J., de Winther M., van de Vosse E., Van Ommen G., Den Dunnen J.T. Centromeric and noncentromeric ADE2-selectable fragmentation vectors for yeast artificial chromosomes in AB1380. Genome Res. 7:1997;657-660.
14. Ioannou P., Amemiya C., Garnes J., Kroisel P., Shizuya H., Chen C., Batzer M., de Jong P. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat. Genet. 6:1994;84-89.
15. Lewis B., Shah N., Braun B., Denny C. Creation of a yeast artificial chromosome fragmentation vector based on Lysine-2. Genet. Anal. Tech. Appl. 9:1992;86-90.
16. Lioumi M., Olavesen M., Nizetic D., Ragoussis J. High-resolution YAC fragmentation map of 1q21. Genomics. 49:1998;200-208.
17. Pavan W., Hieter P., Griffin C., Hawkins A., Reeves R. Yeast artificial chromosome modifying vectors: applications for the analysis of complex genomes. Anand R. Techniques for the Analysis of Complex Genomes. 1992;173-195 Academic Press, London.
18. Pavan W., Hieter P., Sears D., Burkhoff A., Reeves R. High-efficiency yeast artificial chromosome fragmentation vectors. Gene. 106:1991;125-127.
19. Riley J., Butler R., Ogilvie D., Finniear R., Jenner D., Powell S., Anand R., Smith J., Markham A. A novel rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res. 18:1992;2887-2890.
20. Rogaev E., et al. Analysis of the 5′ sequence genomic structure and alternative splicing of the presenilin-1 gene (PSEN1) associated with early onset Alzheimer disease. Genomics. 40:1997;415-424.
21. Sainz J., Pevny L., Wu Y., Cantor C., Smith C. Distribution of interspersed repeats (Alu and Kpn) on NotI restriction fragments of human chromosome 21. Proc. Natl. Acad. Sci. USA. 89:1992;1080-1084.
22. Sherman F. Getting started with yeast. Guthrie C., Fink G. Guide to Yeast Genetics and Molecular Biology. Methods of Enzymology. 1991;3-21 Academic Press, San Diego.
23. Sherrington R., et al. Cloning of a gene bearing missense mutations in early-onset familial Alzheimer's disease. Nature. 375:1995;754-760.
24. Shizuya H., Birren B., Kim U., Mancino V., Slepak T., Tachiiri Y., Simon M. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA. 89:1992;8794-8797.
25. Silverman G., Ye R., Pollock K., Sadler E., Korsmeyer S. Use of yeast artificial chromosome clones for mapping and walking within human chromosome segments 18q21.3. Proc. Natl. Acad. Sci. USA. 86:1989;7485-7489.
26. Southern E., Anand R., Brown W., Fletcher D. A model for the separation of large DNA molecules by crossed field gel electrophoresis. Nucleic Acids Res. 15:1987;5925-5943.
27. Spencer F., Hugerat Y., Simchen G., Hurko O., Connely C., Hieter P. Yeast kar1 mutants provide an effective method for YAC transfer to new hosts. Genomics. 22:1994;118-126.
28. Theuns, J., Cruts, M., Del Favero, J., Goossens, D., Dauwerse, H., Wehnert, A., Den Dunnen, J.T., Van Broeckhoven, C., 1999. Determination of the genomic organization of presenilin-1 on chromosome 14 by fiber-FISH analysis and restriction mapping of cloned DNA. Mamm. Genome, in press.
29. Warner L., Hilz M., Appel S., Killian J., Kolodny E., Karpati G., Carpenter S., Watters G., Wheeler C., Witt D., Bodell A., Nelis E., Van Broeckhoven C., Lupski J. Clinical phenotypes of different MPZ (P0) mutations may include Charcot-Marie-Tooth type 1B, Dejerine-Sottas and congenital hypomyelineation. Neuron. 17:1996;451-460.
30. Weissenbach J., Gyapay G., Dib C., Vignal A., Morisette J., Millasseau P., Vaysseix G., Lathrop M. A second generation linkage map of the human genome. Nature. 359:1992;794-801.