Transient dimer in the refolding kinetics of cytochrome c characterized by small-angle X-ray scattering

Biochemistry

Volumn 38, Issue 46, 1999, Pages 15352-15359

  Segel, Daniel J ^a   Eliezer, David ^e   Uversky, Vladimir ^b,c   Fink, Anthony L ^c   Hodgson, Keith O ^d   Doniach, Sebastian ^a  

^a STANFORD UNIVERSITY   (United States)

^b INSTITUTE FOR BIOLOGICAL INSTRUMENTATION   (Russian Federation)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^e WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C; IMIDAZOLE;

ARTICLE; DIMERIZATION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN STABILITY; RADIATION SCATTERING;

ANIMALS; CHROMATOGRAPHY, GEL; CYTOCHROME C GROUP; DIMERIZATION; HORSES; HYDROGEN-ION CONCENTRATION; IMIDAZOLES; KINETICS; MODELS, CHEMICAL; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; SCATTERING, RADIATION; THERMODYNAMICS; X-RAYS;

EID: 0033576317     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991337k     Document Type: Article

References (47)

1. Eliezer, D., Chiba, K., Tsuruta, H., Doniach, S., Hodgson, K. O., and Kihara, H. (1993) Biophys. J. 65, 912-917.
2. Bushnell, G. W., Louis, G. V., and Brayer, G. D. (1990) J. Mol. Biol. 214, 585-596.
3. Babul, J., and Stellwagen, E. (1971) Biopolymers 11, 2359-2361.
4. Babul, J., and Stellwagen, E. (1972) Biochemistry 11, 1195-1200.
5. Tsong, T. Y. (1975) Biochemistry 14, 1542-1547.
6. Roder, H., Elove, G. A., and Englander, S. W. (1988) Nature 335, 700-704.
7. Elove, G. A., Bhuyan, A. K., and Roder, H. (1994) Biochemistry 33, 6925-6935.
8. Sosnick, T. R., Mayne, L., Miller, R., and Englander, S. W. (1994) Nat. Struct. Biol. 1, 149-156.
9. Colon, W., Wakem, L. P., Sherman, F., and Roder, H. (1997) Biochemistry 36, 12535-12541.
10. Takahashi, S., Yeh, S.-R., Das, T. K., Chan, C.-K., and Gottfried, D. S. (1997) Nat. Struct. Biol. 4, 44-50.
11. Yeh, S.-R., Takahashi, S., Fan, B., and Rousseau, D. L. (1997) Nat. Struct. Biol. 4, 51-56.
12. Brems, D. N., and Stellwagen, E. (1983) J. Biol. Chem. 258, 3655-3660.
13. Chan, C-K., Hu, Y., Takahashi, S., Rousseau, D. L., Eaton, W. A., and Hofrichter, J. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 1179-1784.
14. Shastry, M. C. R., and Roder, H. (1998) Nat. Struct. Biol. 5, 385-392.
15. Sosnick, T. R., Shtilerman, M. D., Mayne, L., and Englander, S. W. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 8545-8550.
16. Shastry, M. C. R., Luck, S. D., and Roder, H. (1998) Biophys. J. 74, 2714-2721.
17. Colon, W., Elove, G. A., Wakem, L. P., Sherman, F., and Roder, H. (1996) Biochemistry 35, 5538-5549.
18. Elove, G. A., Chaffote, A. F., Roder, H., and Goldberg, M. E. (1992) Biochemistry 31, 6876-6883.
19. Tsong, T. Y. (1976) Biochemistry 15, 5467-5473.
20. Chen, L., Hodgson, K. O., and Doniach, S. (1996) J. Mol. Biol. 267, 658-671.
21. Segel, D. J., Fink, A. L., Hodgson, K. O., and Doniach, S. (1998) Biochemistry 37, 12443-12541.
22. Chen, L., Wildegger, G., Kiefhaber, T., Hodgson, K. O., and Doniach, S. (1998) J. Mol. Biol. 276, 225-237.
23. Segel, D. J., Bachmann, A., Hofrichter, J., Hodgson, K. O., Doniach, S., and Kiefhaber, T. (1999) J. Mol. Biol. 288, 489-499.
24. Wakatsuki, S., Hodgson, K. O., Eliezer, D., Rice, M., Hubbard, S., Gillis, N., and Doniach, S. (1992) Rev. Sci. Instrum. 63, 1736-1740.
25. Tsuruta, H., Brennan, S., Rek, Z. U., Irving, T. C., Tompkins, W. H., and Hodgson, K. O. (1998) J. Appl. Crystallogr. 31, 672-682.
26. Tsuruta, H., Nagamura, T., Kimura, K., Igarashi, Y., Kajita, A., Wang, Z.-X., Wakabayashi, K., Amemiya, Y., and Kihara, H. (1989) Rev. Sci. Instrum. 60, 2356-2358.
27. Glatter, O., and Kratky, O. (1982) Small-Angle X-ray Scattering; Academic Press, New York.
28. Pace, C. N. (1986) in Methods in Enzymology; (Colowick, S. P., Kaplan, N. O., Eds.) pp 266-280, Academic Press, Orlando, FL.
29. Semenyuk, A. V., and Svergun, D. I. (1991) J. Appl. Crystallogr. 24, 537-540.
30. Ackers, G. L. (1967) J. Biol. Chem. 242, 3237-3238.
31. Ackers, G. L. (1970) Adv. Protein Chem. 24, 343-446.
32. Liu, G., Shao, W., Huang, X., Wu, H., and Tang, W. (1996) Biochim. Biophys. Acta 1277, 61-82.
33. Alonso, D. O. V., and Dill, K. A. (1991) Biochemistry 30, 5974-5985.
34. Schellman, J. A. (1978) Biopolymers 17, 1305-1322.
35. Henry, E. R., and Hofrichter, J. (1992) Methods Enzymol. 210, 129-192.
36. Shalongo, W., Ledger, R., Jagannadham, M. V., and Stellwagen, E. (1987) Biochemistry 26, 3135-3141.
37. Shalongo, W., Jagannadham, M. V., Heid, P., and Stellwagen, E. (1992) Biochemistry 31, 11390-11396.
38. Shalongo, W., Jagannadham, M., and Stellwagen, E. (1993) Biopolymers 33, 135-145.
39. Palleros, D. R., Shi, L., Reid, K. L., and Fink, A. L. (1993) Biochemistry 32, 4314-4321.
40. Zerovnik, E., Jerala, R., Poklar, N., Zitko, L. K., and Turk, V. (1994) Biochim. Biophys. Acta 1209, 140-143.
41. Batas, D., Jones, H. R., and Chaudhuri, J. B. (1997) J. Chromatogr. A 766, 109-119.
42. Fink, A. L., Oberg, K. A., and Seshadri, S. (1998) Folding Des. 3, 19-25.
43. Fink, A. L. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 495-522.
44. Palleros, D. R., Reid, K. L., McCarty, J. S., Walker, G. C., and Fink, A. L. (1992) J. Biol. Chem. 267, 5279-5285.
45. Uversky, V. N., Segel, D. J., Doniach, S., and Fink, A. L. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 5480-5483.
46. Bennett, M. J., Sclunegger, M. P., and Eisenberg, D. (1997) Protein Sci. 4, 2455-2468.
47. Silow, and Oliveberg, M. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 6084-6086.