Sequence analysis of an amphioxus cosmid containing a gene homologous to members of the aldo-keto reductase gene superfamily

Gene

Volumn 230, Issue 2, 1999, Pages 207-214

  Boeddrich, A ^a   Burgtorf, C ^a   Francis, F ^a   Hennig, S ^a   Panopoulou, G ^a   Steffens, C ^a   Borzym, K ^a   Lehrach, H ^a  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

Cosmid sequencing; Exon prediction; Expressed sequences

Indexed keywords

ALDEHYDE REDUCTASE;

ARTICLE; COSMID; EXON; GENE EXPRESSION; GENE LIBRARY; GENE SEQUENCE; MOLECULAR CLONING; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY;

ALCOHOL OXIDOREDUCTASES; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHORDATA, NONVERTEBRATE; CHROMOSOME MAPPING; CLONING, MOLECULAR; COSMIDS; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT;

EID: 0033574726     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00079-7     Document Type: Article

References (21)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Aoki H., Okada T., Mizutani T., Numata Y., Minegishi T., Miyamoto K. Identification of two closely related genes, inducible and noninducible carbonyl reductases in the rat ovary. Biochem. Biophys. Res. Commun. 230:1997;518-523.
3. Bonfield J.K., Smith K.F., Staden R. A new DNA sequence assembly program. Nucleic Acids Res. 23:1995;4992-4999.
4. Brooke N.M., Garcìa-Fernandez J., Holland P.W. The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature. 392:1998;920-922.
5. Burge C.B., Karlin S. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268:1997;78-94.
6. Burge C.B., Karlin S. Finding the genes in genomic DNA. Curr. Opin. Struct. Biol. 8:1998;346-354.
7. Burgtorf C., Welzel K., Hasenbank R., Zehetner G., Weis S., Lehrach H. Gridded genomic libraries of different chordate species: a reference library system for basic and comparative genetic studies of chordate genomes. Genomics. 52:1998;230-232.
8. Gonzalez B., Sapra A., Rivera H., Kaplan W.D., Yam B., Forrest G.L. Cloning and expression of the cDNA encoding rabbit liver carbonyl reductase. Gene. 154:1995;297-298.
9. Holland P.W., Garcìa-Fernandez J., Williams N.A., Sidow A. Gene duplications and the origins of vertebrate development. Dev. Suppl. 36:1994;125-133.
10. Khanna M., Qin K.N., Wang R.W., Cheng K.C. Substrate specificity, gene structure, and tissue-specific distribution of multiple human 3 alpha-hydroxysteroid dehydrogenases. J. Biol. Chem. 270:1995;20162-20168.
11. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning. A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
12. Schmidtke J., Epplen J.T., Engel W. Genome analysis of Amphioxus and speculation as to the origin of contrasting vertebrate genome organization patterns. Comp. Biochem. Physiol. 63B:1979;455-458.
13. Seery L.T., Nestor P.V., FitzGerald G.A. Molecular evolution of the aldo-keto reductase gene superfamily. J. Mol. Evol. 46:1997;139-146.
14. Sidow A. Gen(om)e duplications in the evolution of early vertebrates. Curr. Opin. Genet. Dev. 6:1996;715-722.
15. Tanaka M., Ohno S., Adachi S., Nakajin S., Shinoda M., Nagahama Y. Pig testicular 20 beta-hydroxysteroid dehydrogenase exhibits carbonyl reductase-like structure and activity. cDNA cloning of pig testicular 20 beta-hydroxysteroid dehydrogenase. J. Biol. Chem. 267:1992;13451-13455.
16. Uberbacher E.C., Mural R.J. Locating protein-coding regions in human DNA-sequences by a multiple sensor neural network approach. Proc. Natl. Acad. Sci. 88:1991;11261-11265.
17. Watanabe K., Sugawara C., Ono A., Fukuzumi Y., Itakura S., Yamazaki M., Tashiro H., Osoegawa K., Soeda E., Nomura T. Mapping of a novel human carbonyl reductase, cbr3, and ribosomal pseudogenes to human chromosome 21q22.2. Genomics. 52:1998;95-100.
18. Wei J., Dlouhy S.R., Hara A., Ghetti B., Hodes M.E. Cloning a cDNA for carbonyl reductase (Cbr) from mouse cerebellum: murine genes that express cbr map to chromosomes 16 and 11. Genomics. 34:1996;147-148.
19. Wermuth B., Maderheinemann G., Ernst E. Cloning and expression of carbonyl reductase from rat testis. Eur. J. Biochem. 228:1995;473-479.
20. Wermuth B., Bohren K.M., Heinemann G., Wartburg J.P., Gabbay K.H. Human carbonyl reductase. Nucleotide sequence analysis of a cDNA and amino acid sequence of the encoded protein. J. Biol. Chem. 263:1988;16185-16188.
21. Zhang M.Q. Identification of protein coding regions in the human genome by quadratic discriminant analysis. Proc. Natl. Acad. Sci. USA. 94:1997;565-568. Published erratum appears in Proc. Natl. Acad. Sci. USA 94 (1997) 5495.