Excision of 5,6-dihydroxy-5,6-dihydrothymine, 5,6-dihydrothymine, and 5- hydroxycytosine from defined sequence oligonucleotides by Escherichia coli endonuclease III and Fpg proteins: Kinetic and mechanistic aspects

Biochemistry

Volumn 38, Issue 11, 1999, Pages 3335-3344

  D'Ham, Cédric ^a   Romieu, Anthony ^a   Jaquinod, Michel ^b   Gasparutto, Didier ^a   Cadet, Jean ^a  

^a INSTITUT DE RECHERCHES INTERNATIONALES SERVIER   (France)

^b INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

5,6 DIHYDRO 5,6 DIHYDROXYTHYMIDINE; CYTOSINE DERIVATIVE; DNA GLYCOSYLTRANSFERASE; ENDONUCLEASE; OLIGONUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; DNA DAMAGE; ENZYME ASSAY; ENZYME KINETICS; ENZYME SPECIFICITY; ESCHERICHIA COLI; EXCISION REPAIR; GAS CHROMATOGRAPHY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MICHAELIS CONSTANT; MUTAGENESIS; NUCLEOTIDE METABOLISM; PRIORITY JOURNAL;

CYTOSINE; DEOXYRIBONUCLEASE (PYRIMIDINE DIMER); DNA REPAIR; DNA-FORMAMIDOPYRIMIDINE GLYCOSYLASE; ENDODEOXYRIBONUCLEASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; KINETICS; N-GLYCOSYL HYDROLASES; OLIGODEOXYRIBONUCLEOTIDES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUBSTRATE SPECIFICITY; THYMINE;

EID: 0033574208     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi981982b     Document Type: Article

References (59)

1. Lindahl, T. (1993) Nature 362, 709-715.
2. Cadet, J. (1994) in DNA adducts: Identification and Biological Significance (Hemminski, K., Dipple, A., Shuker, D. E. G., Kadlubar, F. F., Segerbäck, D., and Bartsch, H., Eds.) pp 245-276, IARC Scientific Publications, Lyon.
3. Cadet, J., Berger, M., Douki, T., and Ravanat, J.-L. (1997) Rev. Physiol. Biochem. Pharmacol. 131, 1-87.
4. Ames, B. N., and Gold, L. S. (1991) Mutat. Res. 250, 3-16.
5. Wiseman, H., and Halliwell, B. (1996) Biochem. J. 313, 17-29.
6. Gilchrest, B. A., and Bohr, V. A. (1997) FASEB J. 11, 322-330.
7. Wallace, S. S. (1994) Int. J. Radiat. Biol. 66, 579-589.
8. Jaiswal, M., Lipinski, L. J., Bohr, W. A., and Mazur, S. J. (1998) Nucleic Acids Res. 26, 2184-2191.
9. Asahara, H., Wistort, P. M., Bank, J. F., Bakerian, R. H., and Cunningham, R. P. (1989) Biochemistry 28, 4444-4449.
10. Cunningham, R. P., Asahara, H., Bank, J. F., Scholes, C. P., Salerno, J. C., Surerus, K., Munck, E., McCracken, J., Peisach, J., and Emptage, M. H. (1989) Biochemistry 28, 4450-4455.
11. Bailly, V., and Verly, W. G. (1984) FEBS Lett. 178, 223-227.
12. Kow, Y., and Wallace, S. S. (1987) Biochemistry 26, 8200-8206.
13. Bailly, V., and Verly, W. G. (1987) Biochem. J. 242, 565-572.
14. Kim, J., and Linn, S. (1988) Nucleic Acids Res. 16, 1135-1141.
15. Mazumder, A., Gerlt, J. A., Absalon, M. J., Stubbe, J., Cunningham, R. P., Whitka, J., and Bolton, P. H. (1991) Biochemistry 30, 1119-1126.
16. Demple, B., and Linn, S. (1980) Nature 287, 203-208.
17. Breimer, L., and Lindahl, T. (1980) Nucleic Acids Res. 8, 6199-6211.
18. Breimer, L. H., and Lindahl, T. (1984) J. Biol. Chem. 259, 5543-5548.
19. Boorstein, R. J., Hilbert, T. P., Cadet, J., Cunningham, R. P., and Teebor, G. W. (1989) Biochemistry 28, 6164-6170.
20. Dizdaroglu, M., Laval, J., and Boiteux, S. (1993) Biochemistry 32, 12105-12111.
21. Hatahet, Z., Kow, Y. W., Purmal, A. A., Cunningham, R. P., and Wallace, S. S. (1994) J. Biol. Chem. 269, 18814-18820.
22. Cunningham, R. P., and Weiss, B. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 474-478.
23. Jiang, D. Y., Hatahet, Z., Blaisdell, J. O., Melamede, R. J., and Wallace, S. S. (1997) J. Bacteriol. 179, 3773-3782.
24. Saito, Y., Uraki, F., Nakajima, S., Asaeda, A., Ono, K., Kubo, K., and Yamamoto, K. (1997) J. Bacteriol. 179, 3783-3785.
25. Roldàn-Arjona, T., Anselmino, C., and Lindahl, T. (1996) Nucleic Acids Res. 24, 3307-3312.
26. Aspinwall, R., Rothwell, D. G., Roldàn-Arjona, T., Anselmino, C., Ward, C. J., Cheadle, J. P., Sampson, J. R., Lindahl, T., Harris, P. C., and Hickson, I. D. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 109-114.
27. Hubert, T. P., Chaung, W. R., Boorstein, R. J., Cunningham, R. P., and Teebor, G. W. (1997) J. Biol. Chem. 272, 6733-6740.
28. Boiteux, S., O'Connor, T. R., and Laval, J. (1987) EMBO J. 6, 3177-3183.
29. Boiteux, S., O'Connor, T. R., Lederer, F., Gouyette, A., and Laval, J. (1990) J. Biol. Chem. 265, 3916-3922.
30. Bhagwat, M., and Gerlt, J. A. (1996) Biochemistry 35, 659-665.
31. Chetsanga, C. J., and Lindahl, T. (1979) Nucleic Acids Res. 6, 3673-3684.
32. Breimer, L. H. (1984) Nucleic Acids Res. 12, 6359-6367.
33. Tchou, J., Kasai, H., Shibutani, S., Chung, M.-H., Laval, J., Grollman, A. P., and Nishimura, S. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 4690-4694.
34. Tchou, J., Bodepudi, V., Shibutani, S., Antoshechkin, I., Miller, J., Grollman, A. P., and Johnson, F. (1994) J. Biol. Chem. 269, 15318-15324.
35. Boiteux, S., Gajewski, E., Laval, J., and Dizdaroglu, M. (1992) Biochemistry 31, 106-110.
36. Karakaya, A., Jaruga, P., Bohr, V. A., Grollman, A. P., and Dizdaroglu, M. (1997) Nucleic Acids Res. 25, 474-479.
37. Michaels, M. L., Cruz, C., Grollman, A. P., and Miller, J. H. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 7022-7025.
38. Aufret van Der Kamp, P., Thomas, D., Barbey, R., De Oliveira, R., and Boiteux, S. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 5197-5202.
39. Aburatani, H., Hippo, Y., Ishida, T., Takashima, R., Matsuba, C., Kodama, T., Takao, M., Yasui, A., Yamamoto, K., Asano, M., Fukasawa, K., Yoshinari, T., Inoue, H., Ohtsuka, E., and Nishimura, S. (1997) Cancer Res. 57, 2151-2156.
40. Arai, K., Morishita, K., Shinmura, K., Kohno, T., Kim, S. R., Nohmi, T., Taniwaki, S., Ohwada, S., and Yokota, J. (1997) Oncogene 14, 2857-2861.
41. Lu, R., Nash, H. M., and Verdine, G. L. (1997) Curr. Biol. 7, 397-407.
42. Radicella, J. P., Dherin, C., Desmaze, C., Fox, M. S., and Boiteux, S. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 8010-8015.
43. Roldàn-Arjona, T., Wei, Y. F., Carter, K. C., Klungland, A., Anselmino, C., Wang, R. P., Augustus, M., and Lindahl, T. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 8016-8020.
44. Rosenquist, T. A., Zharkov, D. O., and Grollman, A. P. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 7429-7434.
45. Wang, D., and Essigmann, J. M. (1997) Biochemistry 36, 8628-8633.
46. Beaucage, S. L., and Iyer, R. P. (1992) Tetrahedron 48, 2223-2311.
47. Schulhof, J. C., Molko, D., and Téoule, R. (1988) Nucleic Acids Res. 16, 319-326.
48. Romieu, A., Gasparutto, D., Molko, D., and Cadet, J. (1997) Tetrahedron Lett. 38, 7531-7534.
49. Basu, A. K., Loechler, E. L., Leadon, S. A., and Essigmann, J. M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 7677-7681.
50. Kao, J. Y., Goljer, I., Phan, T. A., and Bolton, P. H. (1993) J. Biol. Chem. 268, 17787-17793.
51. D'Ham, C., Ravanat, J.-L., and Cadet, J. (1998) J. Chromatogr., B 710, 67-74.
52. Lustig, M. J., Cadet, J., Boorstein, R. J., and Teebor, G. W. (1992) Nucleic Acids Res. 20, 4839-4845.
53. Douki, T., Delateur, T., Bianchini, F., and Cadet, J. (1996) Carcinogenesis 17, 347-353.
54. Cadet, J., and Téoule, R. (1977) J. Chem. Res. (Suppl.), 296-297.
55. Wagner, J. R., Blount, B. C., and Weinfield, M. (1996) Anal. Biochem. 233, 76-86.
56. Wagner, J. R., Hu, C.-C., and Ames, B. N. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 3380-3384.
57. Purmal, A. A., Lampman, G. W., Bond, J. P., Hatahet, Z., and Wallace, S. S. (1998) J. Biol. Chem. 273, 10026-10035.
58. Wagner, J., van Lier, J., Decarroz, C., Berger, M., and Cadet, J. (1990) Methods Enzymol. 186, 502-511.
59. Mosbaugh, D. W., and Linn, S. (1980) J. Biol. Chem. 255, 11743-11752.