Crystal structure of Paracoccus denitrificans electron transfer flavoprotein: Structural and electrostatic analysis of a conserved flavin binding domain

Biochemistry

Volumn 38, Issue 7, 1999, Pages 1977-1989

  Roberts, David L ^a   Salazar, Denise ^b   Fulmer, John P ^a   Frerman, Frank E ^b   Kim, Jung Ja P ^a  

^a MEDICAL COLLEGE OF WISCONSIN   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE PHOSPHATE; BACTERIAL PROTEIN; FLAVOPROTEIN; MEDIUM CHAIN ACYL COENZYME A DEHYDROGENASE; QUERCETIN;

ALPHA CHAIN; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; CRYSTAL STRUCTURE; ELECTRIC ACTIVITY; ELECTRON TRANSPORT; ISOELECTRIC POINT; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACOCCUS DENITRIFICANS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN STRUCTURE; R FACTOR;

ADENOSINE MONOPHOSPHATE; AMINO ACID SEQUENCE; AMINO ACIDS; ANIMALS; COMPUTER SIMULATION; CONSERVED SEQUENCE; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; ELECTRON TRANSPORT; ELECTRON-TRANSFERRING FLAVOPROTEINS; ELECTROSTATICS; FLAVIN-ADENINE DINUCLEOTIDE; FLAVINS; FLAVOPROTEINS; HUMANS; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PARACOCCUS DENITRIFICANS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID; SWINE;

EID: 0033573853     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9820917     Document Type: Article

References (47)

1. Weidenhaupt, M., Rossi, P., Beck, C., Fischer, H.-M., and Hennecke, H. (1996) Arch. Microbiol. 165, 169-178.
2. Crane, F. L., and Beinert, H. (1956) J. Biol. Chem. 218, 717-731.
3. Husain, M., and Steenkamp, D. J. (1985) J. Bacteriol. 163, 709-715.
4. Bedzyk, L. A., Escudero, K. W., Gill. R. E., Griffin, K. J., and Frerman, F. E. (1993) J. Biol. Chem. 268, 20211-20217.
5. Chen, D., and Swenson, R. P. (1994) J. Biol. Chem. 269, 32120-32130.
6. Eichler, K., Buchet, A., Bourgis, F., Kleber, H. P., and Mandrand-Berthelot, M. A. (1995) J. Basic Microbiol. 35, 217-227.
7. Tsai, M. H., and Saier, M. H., Jr. (1995) Res. Microbiol. 146, 397-404.
8. Earl, C. D., Ronson, C. W., and Ausubel, F. M. (1987) J. Bacteriol. 169, 1127-1136.
9. Preisig, O., Anthamatten, D., and Hennecke, H. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 3309-3313.
10. Roberts, D. L., Frerman, F. E., and Kim, J. J.-P. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 14355-14360.
11. Salazar, D., Zhang, L., deGala, G. D., and Frerman, F. E. (1997) J. Biol. Chem. 272, 26425-26433.
12. Husain, M., Stankovich, M. T., and Fox, B. G. (1984) Biochem. J. 219, 1043-1047.
13. Byron, C. M., Stankovich, M. T., Husain, M., and Davidson, V. (1989) Biochemistry 28, 8582-8587.
14. Salazar, D., Zhang, L., and Frerman, F. E. (1997) in Flavins and Flavoproteins (Stevenson, K. J., Massey, V., and Williams, C. H., Jr., Eds.) pp 93-96, University of Calgary Press, Alberta, Canada.
15. Griffin, K. J., Dwyer, T. M., Manning, M. C., Meyer, J. D., Carpenter, J. F., and Frerman, F. E. (1997) Biochemistry 36, 4194-4202.
16. Sato, K., Nishina, Y., and Shiga, K. (1993) J. Biochem. 114, 215-222.
17. DuPlessis, E. R., Rohlfs, R. J., Hille, R., and Thorpe, C. (1994) Biochem. Mol. Biol. Int. 32, 195-199.
18. Swenson, R. P., and Chen, D. (1997) in Flavins and Flavoproteins (Stevenson, K. J., Massey, V., and Williams, C. H., Jr., Eds.) pp 515-518, University of Calgary Press, Alberta, Canada.
19. Herrick, K. R., Salazar, D., Goodman, S. I., Finocchiaro, G., Bedzyk, L. A., and Frerman, F. E. (1994) J. Biol. Chem. 269, 32239-32245.
20. Zhou, Z., and Swenson, R. P. (1995) Biochemistry 34, 3183-3192.
21. Chang, F. C., and Swenson, R. P. (1997) Biochemistry 36, 9013-9021.
22. Ludwig, M. L., Pattridge, K. A., Metzger, A. L., Dixon, M. M., Eren, M., Feng, Y., and Swenson, R. P. (1997) Biochemistry 36, 1259-1280.
23. Roberts, D. L., Herrick, K. R., Frerman, F. E., and Kim, J. J.-P. (1995) Protein Sci. 4, 1654-1657.
24. McPherson, A. (1990) Eur. J. Biochem. 189, 1-23.
25. Matthews, B. W. (1968) J. Mol. Biol. 33, 491-497.
26. Otwinowski, Z., and Minor, W. (1996) in Methods of Enzymology (Carter, C. W., Jr., and Sweet, R. M., Eds.) Vol. 276, Academic Press, New York.
27. Rossman, M. G., and Blow, D. M. (1962) Acta Crystallogr. 15, 24-31.
28. Brünger, A. (1992) X-PLOR, Version 3.1, Howard Hughes Medical Institute and Department of Biophysics and Biochemistry, Yale University, New Haven, CT.
29. Cambillau, C., Roussel, A., Inisan, A. G., and Knoops-Mouthuy, E. (1996) TURBO-FRODO Manual (Version 5.5), CNRS/Universite Aix-Marseille, Marseille, France.
30. Nichols, A. (1992) GRASP: Graphical Representation and Analysis of Surface Properties, Columbia University, New York.
31. Massey, V. (1991) in Flavins and Flavoproteins (Curti, B., Ronchi, S., and Zanetti, G., Eds.) pp 59-66, Walter de Gruyter, Berlin.
32. McIlwain, H. (1937) J. Chem. Soc. 2, 1704-1711.
33. Minnaert, K. (1965) Biochim. Biophys. Acta 110, 42-56.
34. Beckmann, J. D., and Frerman, F. E. (1983) J. Biol. Chem. 258, 7563-7569.
35. Beckmann, J. D., and Frerman, F. E. (1985) Biochemistry 24, 3922-3925.
36. Carson, M. (1996) RIBBONS, Version 2.0, University of Alabama, Birmingham, AL.
37. Whitfield, C. D., and Mayhew, S. G. (1974) J. Biol. Chem. 249, 2801-2810.
38. O'Neill, H., Mayhew, S. G., and Butler, G. (1998) J. Biol. Chem. 273, 21015-21024.
39. Sharkey, C. T., Walsh, M. A., Mayhew, S. G., and Higgins, T. M. (1997) Acta Crystallogr., Sect. D 53, 461-463.
40. Gorelick, R. J., and Thorpe, C. (1986) Biochemistry 25, 7092-7098.
41. Moore, S. A., James, M. N., O'Kane, D. J., and Lee, J. (1993) EMBO J. 12, 1767-1774.
42. Lu, G., Lindqvist, Y., Schneider, G., Dwivedi, U., and Campbell, W. (1995) J. Mol. Biol. 248, 931-948.
43. Muller, Y. A., and Schulz, G. E. (1993) Science 259, 965-967.
44. Müller, F. (1992) in Chemistry and Biochemistry of Flavoenzymes (Müller, F., Ed.) Vol. III, pp 557-595, CRC Press, Boca Raton, FL.
45. Griffin, K. J., deGala, G. D., Eisenreich, W., Müller, F., and Frerman, F. E. (1998) Eur. J. Biochem. 255, 125-132.
46. Gatti, D. L., Palfey, B. A., Lah, M. S., Entsch, B., Massey, V., Ballou, D. P., and Ludwig, M. L., (1994) Science 266, 110-114.
47. Wagner, M. J., Packer, J. C., Howe, C. J., and Bendall, D. S. (1995) Biochim. Biophys. Acta 1276, 246-252.