Codon usage as a tool to predict the cellular location of eukaryotic ribosomal proteins and aminoacyl-tRNA synthetases

Nucleic Acids Research

Volumn 27, Issue 14, 1999, Pages 2848-2851

  Chiapello, Hélène ^a,b   Ollivier, Emmanuelle ^b   Landès Devauchelle, Claudine ^b   Nitschké, Patrick ^b   Risler, Jean Loup ^b  

^a CEMAGREF   (France)

^b LABORATOIRE DES SCIENCES DU CLIMAT ET DE L ENVIRONNEMENT   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; CELL PROTEIN; CYTOPLASM PROTEIN; RIBOSOME PROTEIN;

ARTICLE; CAENORHABDITIS ELEGANS; CODON USAGE; CONTROLLED STUDY; EUKARYOTIC CELL; GENE SEQUENCE; MITOCHONDRION; NONHUMAN; PRIORITY JOURNAL; PROTEIN LOCALIZATION; YEAST;

AMINO ACYL-TRNA SYNTHETASES; ANIMALS; ARABIDOPSIS; BIOLOGICAL TRANSPORT; CAENORHABDITIS ELEGANS; CELL NUCLEUS; CODON; CYTOPLASM; EUKARYOTIC CELLS; GENES, FUNGAL; GENES, HELMINTH; GENES, PLANT; GENOME; INTERNET; MITOCHONDRIA; OPEN READING FRAMES; RIBOSOMAL PROTEINS; SACCHAROMYCES CEREVISIAE; SOFTWARE;

EID: 0033565223     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.14.2848     Document Type: Article

References (38)

1. Sharp, P.M., Cowe, E., Higgins, D.G., Shields, D.C., Wolfe, K.H. and Wright, F. (1988) Nucleic Acids Res., 16, 8207-8211.
2. Gouy, M. and Gautier, C. (1982) Nucleic Acids Res., 10, 7055-7074.
3. Nakamura, Y. and Tabata, S. (1997) Microb. Comp. Genomics, 2, 299-312.
4. Sharp, P.M., Tuohy, T.M. and Mosurski, K.R. (1986) Nucleic Acids Res., 14, 5125-5143.
5. Stenico, M., Lloyd, A.T. and Sharp, P.M. (1994) Nucleic Acids Res., 22, 2437-2446.
6. Ikemura, T. (1982) J. Mol. Biol., 158, 573-597.
7. Medigue, C., Rouxel, T., Vigier, P., Hénaut, A. and Danchin, A. (1991) J. Mol. Biol, 222, 851-856.
8. Hénaut, A. and Danchin, A. (1996) In Neidhardt, F.C. (ed.), Escherichia coli and Salmonella. Cellular and Molecular Biology. ASM Press, Washington DC, pp. 2047-2066.
9. McInerney, J.O. (1997) Microb. Comp. Genomics, 2, 1-10.
10. Kerr, A.R., Peden, J.F. and Sharp, P.M. (1997) Mol. Microbiol., 25, 1177-1179.
11. McInerney, J.O. (1998) Proc. Natl Acad. Sci. USA, 95, 10698-10703.
12. Chiapello, H., Lisacek, F., Caboche, M. and Hénaut, A. (1998) Gene, 209, GC1-GC38.
13. Bulmer, M. (1991) Genetics, 129, 897-907.
14. Eyre-Walker, A. (1996) Mol. Biol. Evol., 13, 864-872.
15. Pan, A., Dutta, C. and Das, J. (1998) Gene, 215, 405-413.
16. Sharp, P.M., Stenico, M., Peden, J.F. and Lloyd, AT. (1993) Biochem. Soc. Trans., 21, 835-841.
17. Bulmer, M. (1990) Nucleic Acids Res., 18, 2869-2873.
18. Diaz-Lazcoz, Y., Hénaut, A., Vigier, P. and Risler, J.L. (1995) J. Mol. Biol., 250, 123-127.
19. Gouy, M., Gautier, C., Attimonelli, M., Lanave, C. and di Paola, G. (1985) Comput. Appl. Biosci., 1, 167-172.
20. Grantham, R., Gautier, C., Gouy, M., Jacobzone, M. and Mercier, R. (1981) Nucleic Acids Res., 9, r43-r74.
21. Hill, M.O. (1974) Appl. Statist., 23, 340-353.
22. Benzécri, J.P. (1992) The Correspondence Analysis Handbook. Statistics: Textbooks and Monographs 125. Marcel Dekker, New York.
23. Thioulouse, J., Chessel, D., Dolédec, S. and Olivier, J.M. (1997) Stat. Comput., 7, 75-83.
24. McInerney, J.O. (1998) Bioinformatics, 14, 372-373.
25. Pon, L. and Schatz, G. (1991) In Broach, J.R., Pringle, J.R. and Jones, E.W. (eds), The Molecular and Cellular Biology of the Yeast Saccharomyces. Cold Spring Harbor Laboratory Press, New York, pp. 333-406.
26. Planta, R.J. and Mager, W.H. (1998) Yeast, 14, 471-477.
27. Claros, M.G. and Vincens, P. (1996) Eur. J. Biochem., 241, 779-786.
28. Nakai, K. and Kanehisa, M. (1992) Genomics, 14, 897-911.
29. Gavel, Y. and von Heijne, G. (1990) Protein Eng., 4, 33-37.
30. Kitakawa, M., Graack, H.R., Grohmann, L., Goldschmidt-Reisin, S., Herfurth, E., Wittmann-Liebold, B., Nishimura, T. and Isono, K. (1997) Eur. J. Biochem., 245, 449-456.
31. Mager, W.H., Planta, R.J., Ballesta, J.G., Lee, J.C., Mizuta, K., Suzuki, K., Warner, J.R. and Woolford, J. (1997) Nucleic Acids Res., 25, 4872-4875.
32. Graack, H.R. and Wittmann-Liebold, B. (1998) Biochem. J., 329, 433-448.
33. Goldschmidt-Reisin, S., Kitakawa, M., Herfurth, E., Wittmann-Liebold, B., Grohmann, L. and Graack, H.R. (1998) J. Biol. Chem., 273, 34828-34836.
34. Chatton, B., Walter, P., Ebel, J.P., Lacroute, F. and Fasiolo, F. (1988) J. Biol. Chem., 263, 52-57.
35. Chiu, M.I., Mason, T.L. and Fink, G.R. (1992) Genetics, 132, 987-1001.
36. Mireau, H., Lancelin, D. and Small, I.D. (1996) Plant Cell, 8, 1027-1039.
37. Aota, S., Gojobori, T., Ishibashi, F., Maruyama, T. and Ikemura, T. (1988) Nucleic Acids Res., 16, r315-r402.
38. Ikemura, T. (1985) Mol. Biol. Evol., 2, 13-34.