Dye structure affects Taq DNA polymerase terminator selectivity

Nucleic Acids Research

Volumn 27, Issue 8, 1999, Pages 1912-1918

  Brandis, John W ^a  

^a Applied Biosystems   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEOTIDE; DYE; FLUORESCEIN; RHODAMINE; TAQ POLYMERASE;

ARTICLE; ASSAY; CHEMICAL STRUCTURE; CONFORMATIONAL TRANSITION; DNA SEQUENCE; GEL; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN DNA BINDING;

FLUORESCEINS; FLUORESCENT DYES; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; RHODAMINES; STRUCTURE-ACTIVITY RELATIONSHIP; SUBSTRATE SPECIFICITY; TAQ POLYMERASE; TERMINATOR REGIONS (GENETICS);

EID: 0033561352     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.8.1912     Document Type: Article

References (24)

1. Tabor, S. and Richardson, C.C. (1995) Proc. Natl Acad. Sci. USA, 92, 6339-6343.
2. Reeve, M.A. and Fuller, C.W. (1995) Nature, 376, 796-797.
3. Chadwick, R.B., Conrad, M.P., McGinnis, M.D., Johnston-Dow, L., Spurgeon, S.L. and Kronick, M.N. (1996) Biotechniques, 20, 676-683.
4. Rosenthal, A. and Charnock-Jones, D.S. (1992) DNA Seq., 3, 61-64.
5. Rosenblum, B.B., Lee, L.G., Spurgeon, S.L., Khan, S.H., Menchen, S.M., Heiner, C.R. and Chen, S.M. (1997) Nucleic Acids Res., 25, 4500-4504.
6. Prober, J., Trainor, G.L., Dam, R.J., Hobbs, F.W., Robertson, C.W., Zagursky, R.J., Cocuzza, A.J., Jensen, M.A. and Baumeister, K. (1987) Science, 321, 674-525.
7. Lee, L.G., Connell, C.R., Woo, S.L., Cheng, R.D., McArdle, B.F., Fuller, C.W., Halloran, N.D. and Wilson, R.K. (1992) Nucleic Acids Res., 20, 2471-2483.
8. Bergot, J.B., Chakerian, V., Connell, C.R., Eadie, J.S., Fung, S., Hershey, N.D., Lee, L.G., Menchen, S.M. and Woo, S.L. (1994) US patent no. 5,366,860.
9. PE Applied Biosystems (1995) ABI PRISM™ Dye Terminator Cycle Sequencing Ready Reaction Kit with AmpliTaq® DNA Polymerase, FS; Protocol Revision A, P/N 402078. PE-Applied Biosystems, Foster City, CA.
10. PE Applied Biosystems (1995b) ABI PRISM™ Dye Terminator Cycle Sequencing Ready Reaction Kit with AmpliTaq® DNA Polymerase, FS; Protocol Revision B, P/N 402113. PE-Applied Biosystems, Foster City, CA.
11. Barnes, W.M. (1992) Gene, 112, 29-35.
12. Brandis, J.W., Edwards, S.G. and Johnson, K.A. (1996) Biochemistry, 35, 2189-2200.
13. Patel, S.S., Wong, I. and Johnson, K.A. (1991) Biochemistry, 30, 511-525.
14. Kati, W.M., Johnson, K.A., Jerva, L.F. and Anderson, K.S. (1992) J. Biol. Chem., 267, 25988-25997.
15. Fersht, A. (1985) Enzyme Structure and Mechanism. W.H. Freeman & Co., New York, NY.
16. Ju, J., Kheterpal, I., Schere, J.R., Ruan, C., Fuller, C.W., Glazer, A.N. and Mathies, R.A. (1995) Anal. Biochem., 231, 131-140.
17. Carroll, S.S. and Benkovic, S.J. (1990) Chem. Rev., 90, 1291-1307.
18. Johnson, K.A. (1993) Annu. Rev. Biochem., 62, 685-713.
19. Wong, I., Patel, S.S. and Johnson, K.A. (1991) Biochemistry, 30, 526-537.
20. Frey, M.W., Sowers, L.C., Millar, D.P. and Benkovic, S.J. (1995) Biochemistry, 34, 9185-9192.
21. Parker, L.T., Zakeri, H., Deng, Q., Spurgeon, S., Kwok, P.-Y. and Nickerson, D.A. (1996) Biotechniques, 21, 694-699.
22. Heiner, C.R., Hunkapiller, K.L., Chen, S.-M., Glass, J.I. and Chen, E.Y. (1998) Genomics, 8, 557-561.
23. Kuchta, R.D., Benkovic, P.D. and Benkovic, S.J. (1988) Biochemistry, 27, 6716.
24. Kennard, O. (1987) In Eckstein, F. and Lilley, D.M.J. (eds), Nucleic Acids and Molecular Biology. Springer, Heilelberg, Germany, pp. 25-52.