Contig assembly of bacterial artificial chromosome clones through multiplexed fluorescence-labeled fingerprinting

Genomics

Volumn 56, Issue 3, 1999, Pages 237-246

  Ding, Y ^a   Johnson, M D ^b   Colayco, R ^a   Chen, Y J ^a   Melnyk, J ^a   Schmitt, H ^a   Shizuya, H ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b APPLIED BIOSYSTEMS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG;

ARTICLE; BACTERIUM; CHROMOSOME 22; DNA FINGERPRINTING; DNA PURIFICATION; DNA SEQUENCE; EWING SARCOMA; FLUORESCENCE; HUMAN; PRIORITY JOURNAL; RESTRICTION MAPPING; SEQUENCE TAGGED SITE;

EID: 0033558979     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5734     Document Type: Article

References (16)

1. Branscomb E., Slezak T., Pae R., Galas D., Carrano A. V., Waterman M. Optimizing restriction fragment fingerprinting methods for ordering large genomic libraries. Genomics. 8:1990;351-366.
2. Coulson A., Sulston J., Brenner S., Jonathan K. Toward a physical map of the genome of the nematodeCaenorhabditis elegans. Proc. Natl. Acad. Sci. USA. 83:1986;7821-7825.
3. Genetics Computer Group, 1994, GCG Program Manual for the Wisconsin Package, Version 8, September 1994, Genetics Computer Group, 575 Science Drive, Madison, WI, 53711.
4. Gillett W., Hanks L., Wong G. K.-S., Yu J., Lim R., Olson M. V. Assembly of high-resolution restriction maps based on multiple complete digests of a redundant set of overlapping clones. Genomics. 33:1996;389-408.
5. Gregory S. G., Howell G. R., Bentley D. R. Genome mapping by fluorescent fingerprinting. Genome Res. 7:1997;1162-1168.
6. Kim U-J., Shizuya H., Kang H-L., Choi S-S., Garrett C. L., Smink L. J., Birren B. W., Korenberg J. R., Dunham I., Simon M. I. A BAC-based framework contig map of human chromosome 22q. Proc. Natl. Acad. Sci. USA. 93:1996;6297-6301.
7. Lander E. S., Waterman M. S. Genomic mapping by fingerprinting random clones: A mathematical analysis. Genomics. 2:1988;231-239.
8. Marra M. A., Kucaba T. A., Dietrich N. L., Green E. D., Brownstein B., Wilson R. K., McDonald K. M., Hillier L. W., McPherson J. D., Waterston R. H. High throughput fingerprint analysis of large-insert clones. Genome Res. 7:1997;1072-1084.
9. Olson M. V., Dutchik J. E., Graham M. Y., Brodeur G. M., Helms C., Frank M., MacCollin M., Scheinman R., Frank T. Random-clone strategy for genomic restriction mapping in yeast. Proc. Natl. Acad. Sci. USA. 83:1986;7826-7830.
10. Riles L., Dutchik J. E., Baktha A., McCauley B. K., Thayer E. C., Leckie M. P., Braden V. V., Depke J. E., Olson M. V. Physical maps of the six smallest chromosomes ofSaccharomyces cerevisiae. Genetics. 134:1993;81-150.
11. Shizuya H., Birren B., Kim U-J., Mancino V., Slepak T., Tachiiri Y., Simon M. Cloning and stable maintenance of 300 kilobase-pair fragments of human DNA inEscherichia coli. Proc. Natl. Acad. Sci. USA. 89:1992;8794-8797.
12. Soderlund C., Longden I., Mott R. FPC: A system for building contigs from restriction fingerprinted clones. CABIOS. 13:1997;523-535.
13. Soeda E., Hou D-X., Osoegawa K., Atsuchi Y., Yamagata T., Shimokawa T., Kishida H., Okano S. Cosmid assembly and anchoring to human chromosome 21. Genomics. 25:1995;73-84.
14. Stallings R. L., Torney D. C., Hildebrand C. E., Longmire J. L., Deaven L. L., Jett J. H., Doggett N. A., Moyzis R. K. Physical mapping of human chromosomes by repetitive sequence fingerprinting. Proc. Natl. Acad. Sci. USA. 87:1990;6218-6222.
15. Taylor K., Hornigold N., Conway D., Williams D., Ulinowski Z., Agochiya M., Fattorini P., de Jone P., Little P. F. R., Wolfe J. Mapping the human Y chromosome by fingerprinting cosmid clones. Genome Res. 6:1996;235-248.
16. Wong G. K.-S., Yu J., Thayer E. C., Olson M. V. Multiple-complete-digest restriction fragment mapping - Generating sequence-ready maps for large-scale DNA sequencing. Proc. Natl. Acad. Sci. USA. 94:1997;5225-5230.