The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA

Nucleic Acids Research

Volumn 27, Issue 2, 1999, Pages 543-550

  Eichman, Brandt F ^a   Schroth, Gary P ^a,b   Basham, Beth E ^a,c   Ho, P Shing ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b Genelabs Incorporated   (United States)

^c MERCK RESEARCH LABORATORIES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CYTOSINE; DINUCLEOTIDE; DNA Z; GUANINE; THYMINE;

ARTICLE; BASE PAIRING; DNA CONFORMATION; DNA SEQUENCE; DNA STRUCTURE; PRIORITY JOURNAL;

BASE PAIRING; CRYSTALLOGRAPHY, X-RAY; DNA; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; WATER;

EID: 0033555744     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.2.543     Document Type: Article

References (31)

1. Wang, A.H.-J., Quigley, G.J., Kolpak, F.J., Crawford, J.L. van Boom, J.H., van der Marel, G.A. and Rich, A. (1979) Nature, 282, 680-686.
2. Ho, P.S. and Mooers, B.H.M. (1997) Nucleic Acid Sci., 1, 65-90.
3. Pohl, F.M. and Jovin, T.M. (1972) J. Mol. Biol., 67, 375-396.
4. Jovin, T.M., Soumpasis, D.M. and McIntosh, L.P. (1987) Annu. Rev. Phys. Chem., 38, 521-560.
5. Ellison, M.J., Kelleher, R.J., Wang, A.H.-J., Habener, J.F. and Rich, A. (1985) Proc. Natl Acad. Sci. USA, 82, 8320-8324.
6. McLean, M.J., Lee, J.W. and Wells, R.D. (1988) J. Biol. Chem., 263, 7378-7385.
7. Peck, L.J. and Wang, J.C. (1983) Proc. Natl Acad. Sci. USA, 80, 6206-6210.
8. Lukomski, S. and Wells, R.D. (1994) Proc, Natl Acad. Sci. USA, 91, 9980-9984.
9. Wang, A.H.-J., Gessner, R.V., van der Marel, G.A., van Boom, J.H. and Rich, A. (1985) Proc, Natl Acad. Sci. USA, 82, 3611-3615.
10. Feigon, J., Wang, A.H.-J., van der Marel, G.A., van Boom, J.H. and Ricn, A. (1985) Science, 230, 82-84.
11. Haschemeyer, A.E.V. and Rich, A. (1967) J. Mol. Biol., 27, 369-384.
12. Schroth, G.P., Kagawa, T.F. and Ho, P.S. (1993) Biochemistry, 32, 13381-13392.
13. Parkinson, G.N., Vojtechovsky, J., Clowney, L. and Berman, H.M. (1996) Acta Crystallogr., D52, 57-64.
14. Brünger, A. (1992) X-PLOR Manual, Version 3.1. Yale University Press, New Haven, CT.
15. Luzzati, P.V. (1952) Acta Crystallogr., 5, 802-810.
16. Basham, B., Eichman, B.F. and Ho, P.S. (1998) In Neidle, S. (ed.), The Oxford Handbook of Nucleic Acid Structure. Oxford University Press, Oxford, UK. Vol. I, pp. 199-252.
17. Berman, H.M., Olson, W.K., Beveridge, D.L., Westbrook, J. Gelbin, A., Demeny, T., Hsieh, S.-H., Srinivasan, A.R. and Schneider, B. (1992) Biophys. J., 63, 751-759.
18. Gessnen, R.V., Frederick, C.A., Quigley, G.J., Rich, A. and Wang, A.H.-J. (1989) J. Biol. Chem., 264, 7921-7935.
19. Gessner, R.V., Quigley, G.J. and Egli, M. (1994) J. Mol. Biol, 236, 1154-1168.
20. Berman, H.M. (1994) Curr. Opin. Struct. Biol., 4, 345-350.
21. Kagawa, J.F., Stoddard, D., Zhou, G. and Ho, P.S. (1989) Biochemistry, 28, 6642-6651.
22. Kagawa, T.F., Howell, M.L., Tseng, K. and Ho, P.S. (1993) Nucleic Acids Res., 21, 5978-5986.
23. Arnott, S., Chandrasekaran, R., Birdsall, D.L., Leslie, A.G.W. and Ratliff, R.L. (1980) Nature (Lond.), 283, 743-745.
24. Patel, D.J., Canuel, L.L. and Pohl, F.M. (1979) Proc. Natl Acad. Sci. USA, 76, 2508-2511.
25. Ho, P.S., Frederick, C.A., Quigley, G.J., van der Marel, G.A., van Boom, J.H., Wang, A.H.-J. and Rich, A. (1985) EMBO J., 4, 3617-3623.
26. Vologodskii, A. V. and Frank-Damenetskii, M.D. (1984) J. Biomol. Struct. Dyn., 1, 1325-1333.
27. Schroth, G.P., Chou, P.-J. and Ho, P.S. (1992) J. Biol. Chem., 267, 11846-11855.
28. Fujii, S., Wang, A.H.-J., van der Marel, G., van Boom, J.H. and Rich, A. (1982) Nucleic Acids Res., 10, 7879-7892.
29. Ellison, M.J., Feigon, J., Kelleher, R.J., Wang, A.H.-J. Habener, J.F. and Rich, A. (1986) Biochemistry, 25, 3648-3655.
30. McLean, M.J., Blaho, J.A., Kilpatrick, M.J. and Wells, R.D. (1986) Proc. Natl Acad. Sci. USA, 83, 5884-5888.
31. Ivanov, V.I. and Krylov, D.Y. (1992) Methods Enzymol., 211, 111-127.