Processes governing phytoplankton blooms in estuaries. II: The role of horizontal transport

Marine Ecology Progress Series

Volumn 187, Issue , 1999, Pages 17-30

  Lucas, Lisa V ^a   Koseff, Jeffrey R ^b   Monismith, Stephen G ^b   Cloern, James E ^a   Thompson, Janet K ^a,b  

^a U S GEOLOGICAL SURVEY   (United States)

^b Stanford University   (United States)

Author keywords

Bathymetry; Benthic grazing; Estuaries; Light; Model; Phytoplankton; Transport

Indexed keywords

ALGAL BLOOM; BIOLOGICAL OCEANOGRAPHY; DISPERSION; ESTUARY; PHYTOPLANKTON; SPATIAL DISTRIBUTION; TIDAL CURRENT; TRANSPORT PROCESS;

CALIFORNIA; SAN FRANCISCO BAY; UNITED STATES;

ALGAE;

EID: 0033554576     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps187017     Document Type: Article

References (26)

1. Burau JR, Monismith SG, Koseff JR (1993) Comparison of advective transport algorithms with an application in Suisun Bay, a sub-embayment of San Francisco Bay, California. In: Shen H W, Su S T, Wen F (eds) Hydraulic Engineering '93. American Society of Civil Engineers, New York, p 1628-1634
2. Caffrey JM, Cole BE, Cloern JE, Rudek JR, Tyler AC, Jassby AD (1994) Studies of the San Francisco Bay, California, estuarine ecosystem: pilot regional monitoring results, 1993. Open-File Report 94-82. US Geological Survey, Menlo Park, CA
3. Caffrey JM, Cloern JE, Grenz C (1998) Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California: implications for net ecosystem metabolism. Mar Ecol Prog Ser 172:1-12
4. Casulli V (1990a) Numerical simulation of shallow water flow. In: Gambolati G, Rinaldo A, Brebbia CA, Gray WG, Pinder GF (eds) Computational methods in surface water hydrology. Springer-Verlag, Berlin, p 13-22
5. Casulli V (1990b) Semi-implicit finite-difference methods for the two-dimensional shallow water equations. J Comput Phys 86:56-74
6. Cheng RT, Gartner JW (1985) Harmonic analysis of tides and tidal currents in South San Francisco Bay, California. Estuar Coast Shelf Sci 21:57-74
7. Cheng RT, Casulli V, Gartner JW (1993) Tidal, residual, intertidal mudflat (TRIM) model and its applications to San Francisco Bay, California. Estuar Coast Shelf Sci 36: 235-280
8. Cloern JE (1991) Tidal stirring and phytoplankton bloom dynamics in an estuary. J Mar Res 49:203-221
9. Cloern JE, Cole BE, Wong RLJ, Alpine AE (1985) Temporal dynamics of estuarine phytoplankton: a case study of San Francisco Bay. Hydrobiologia 129:153-176
10. Cloern JE, Powell TM, Huzzey LM (1989) Spatial and temporal variability in South San Francisco Bay (USA). II. Temporal changes in salinity, suspended sediments, and phytoplankton biomass and productivity over tidal time scales. Estuar Coast Shelf Sci 28:599-613
11. Dronkers J, Zimmerman JTF (1982) Some principles of mixing in tidal lagoons. Oceanol Acta SP:107-117
12. Edmunds JL, Cole BE, Cloern JE, Caffrey JM, Jassby AD (1995) Studies of the San Francisco Bay, California, estuarine ecosystem: pilot regional monitoring results, 1994. Open-File Report 95-378. US Geological Survey, Menlo Park, CA
13. Fischer HB, List EJ, Koh RCY, Imberger J, Brooks NH (1979) Mixing in inland and coastal waters. Academic Press, Inc, San Diego, CA
14. Frid CLJ, Mercer TS (1989) Environmental monitoring of caged fish farming in macrotidal environments. Mar Pollut Bull 20(8):379-383
15. Gross ES (1997) Scalar transport in South San Francisco Bay. PhD thesis, Stanford University
16. Gross ES, Koseff JR, Monismith SG (1999) Evaluation of advective schemes for salinity simulations. J Hydrol Eng 125(1):32-46
17. Hirsch C (1988) Numerical computation of internal and external flows, Vol 1. Fundamentals of numerical discretization. John Wiley and Sons Ltd., Chichester
18. Huzzey LM, Cloern JE, Powell TM (1990) Episodic changes in lateral transport and phytoplankton distribution in South San Francisco Bay. Limnol Oceanogr 35(2):472-478
19. Koseff JR, Holen JK, Monismith SG, Cloern JE (1993) Coupled effects of vertical mixing and benthic grazing on phytoplankton populations in shallow, turbid estuaries. J Mar Res 51:843-868
20. Lucas LV, Koseff JR, Cloern JE, Monismith SG, Thompson JK (1999) Processes governing phytoplankton blooms in estuaries. I: The local production-loss balance. Mar Ecol Prog Ser 187:1-15
21. Muylaert K, Kerckvoorde AV, Vyverman W, Sabbe K (1997) Structural characteristics of phytoplankton assemblages in tidal and non-tidal freshwater systems: a case study from the Schelde basin, Belgium. Freshw Biol 38(2): 263-276
22. Ridderinkhof H, Zimmerman JTF (1992) Chaotic stirring in a tidal system. Science 258:1107-1111
23. Thompson JK (1999) The effect of infaunal bivalve grazing on phytoplankton bloom development in South San Francisco Bay. PhD thesis, Stanford University
24. Valiela I, McClelland J, Hauxwell J, Behr PJ, Hersh D, Foreman K (1997) Macroalgal blooms in shallow estuaries: controls and ecophysiological and ecosystem consequences. Limnol Oceanogr 42:1105-1118
25. Walters RA, Cheng RT, Conomos TJ (1985) Time scales of circulation and mixing processes of San Francisco Bay waters. In: Hydrobiologia 129:13-36
26. Zimmerman JTF (1986) The tidal whirlpool: a review of horizontal dispersion by tidal and residual currents. Neth J Sea Res 20(2/3):133-154