Energy transfer from nucleic acids to Tb(III): Selective emission enhancement by single DNA mismatches

Journal of the American Chemical Society

Volumn 121, Issue 1, 1999, Pages 1-7

  Fu, Patty K L ^a   Turro, Claudia ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DOUBLE STRANDED DNA; GUANOSINE; NUCLEIC ACID; OLIGONUCLEOTIDE; SINGLE STRANDED DNA; TERBIUM;

ARTICLE; BASE PAIRING; BINDING AFFINITY; DNA BINDING; DNA STRUCTURE; ENERGY TRANSFER; LUMINESCENCE; NUCLEIC ACID ANALYSIS;

EID: 0033550521     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja9826082     Document Type: Article

References (102)

1. (a) Landegren, U., Ed. Laboratory Protocols for Mutation Detection; Oxford University Press: New York, 1996.
2. (b) Obe, G.; Nataraja, A. T., Eds. Chromosomal Alterations: Origin and Significance; Springer-Verlag: New York, 1994.
3. (c) Davies, K. E.; Read, A. P. Molecular Basis of Inherited Disease; Oxford University Press: New York, 1992.
4. Jackson, B. A.; Barton, J. K. J. Am. Chem. Soc. 1997, 119, 12986-12987.
5. Saha, A. K.; Kross, K.; Kloszewski, E. D.; Upson, D. A.; Toner, J. L.; Snow, R. A.; Black, C. D. V.; Desai, V. C. J. Am. Chem. Soc. 1993, 115, 11032-11033.
6. Lippert, B. J. Chem. Soc., Dalton Trans. 1997, 3971-3976.
7. Oser, A.; Valet, G. Angew. Chem., Int. Ed. Engl. 1990, 29, 1167-1169.
8. (a) Kricka, L. J., Ed. Nonisotopic Probing, Blotting, and Sequencing, 2nd ed.; Academic Press: San Diego, CA, 1995.
9. (b) Isaac, P. G., Ed. Protocols for Nucleic Acid Analysis by Nonradioactive Probes; Humana Press: Ttowa, NJ, 1994.
10. (c) Kricka, L. J., Ed. Nonisotopic DNA Probe Techniques; Academic Press: San Diego, CA, 1992.
11. Li, M.; Selvin, P. R. Bioconjugate Chem. 1997, 8, 127-132.
12. Mayer, A.; Neuenhofer, S. Angew. Chem., Int. Ed. Engl. 1994, 33, 1044-1072
13. Lim, M. J.; Patton, W. F.; Lopez, M. F.; Spofford, K. H.; Shojaee, N.; Shepro, D. Anal. Biochem. 1997, 245, 184-195.
14. Weissman, S. I. J. Chem. Phys. 1942, 10, 214-217.
15. Crosby, G. A. Mol. Cryst. 1966, 1, 37-81.
16. Sato, S.; Wada, M. Bull. Chem. Soc. Jpn. 1970, 43, 1955-1962.
17. Watson, W. M.; Zerger, R. P., Yardley, J. T.; Stucky, G. D. Inorg. Chem. 1975, 14, 2675-2680.
18. Li, M.; Selvin, P. R. J. Am. Chem. Soc. 1995, 117, 8132-8138.
19. (a) Klakamp, S. L.; Horrocks, W. D., Jr. J. Inorg. Biochem. 1992, 46, 175-192.
20. (b) Klakamp, S. L.; Horrocks, W. D., Jr. J. Inorg. Biochem. 1992, 46, 193-205.
21. Topal, M. D.; Fresco, J. R. Biochemistry 1980, 19, 5531-5537.
22. Sabbatini, N.; Guardigli, M.; Lehn, J.-K. Coord. Chem. Rev. 1993, 123, 201-228.
23. (a) Rigault, S.; Piguet, C.; Bernardinelli, G.; Hopfgartner, G. Angew. Chem., Int. Ed. Engl. 1998, 37, 169-172.
24. (b) Martin, N.; Bünzli, J.-C. G.; McKee, V.; Piguet, C.; Hopfgartner, G. Inorg. Chem. 1998, 37, 577-589.
25. (c) Piguet, C.; Bünzli, J.-C. G.; Bernardinelli, G.; Hopfgartner, G.; Petoud, S.; Schaad, O. J. Am. Chem. Soc. 1996, 118, 6681-6697.
26. Alexander, V. Chem. Rev. 1995, 95, 273-342.
27. Choppin, G. R.; Wang, Z. M. Inorg. Chem. 1997, 36, 249-252.
28. Valente, P.; Lincoln, S. F.; Wainwright, K. P. Inorg. Chem. 1998, 37, 2846-2847.
29. Wolbers, M. P. O.; van Veggel, F. C. J. M.; Snellink-Ruël, B. H. M.; Hofstraat, J. W.; Geurts, F. A. J.; Reinhoudt, D. N. J. Am. Chem. Soc. 1997, 119, 138-144.
30. (a) deSilva, A. P.; Gunaratne H. Q. N.; Gunnlaugsson, T.; Huxley, A. J. M.; McCoy, C. P.; Rademacher, J. T.; Rice, T. E. Chem. Rev. 1997, 97, 1515-1566.
31. (b) deSilva, A. P.; Gunaratne, H. Q. N.; McCoy, C. P. Nature 1993, 364, 42-44.
32. (a) Rudzinski, C. M.; Engebretson, D. S.; Hartman, W. K.; Nocera, D. G. J. Phys. Chem. A 1998, 102, 7442.
33. (b) Mortellaro, M. A.; Nocera, D. G. J. Am. Chem. Soc. 1996, 118, 7414-7415.
34. (c) Mortellaro, M. A.; Hartman, W. K.; Nocera, D. G. Angew. Chem. 1996, 35, 1945-1946.
35. (d) Mortellaro, M. A.; Nocera, D. G. Chemtech 1996, 26, 17-23.
36. (a) Parker, D.; Williams, J. A. G. Chem. Commun. 1998, 245-246.
37. (b) Gunnlaugsson, T.; Parker, D. Chem. Commun. 1998, 511-512.
38. (c) Parker, D.; Senanayake, K.; Williams J. A. G. Chem. Commun. 1997, 1777-1778.
39. Ghosh, P.; Bharadwaj, P. K.; Roy, J.; Ghosh, S. J. Am. Chem. Soc. 1997, 119, 11903-11909.
40. (a) Horrocks, W. D., Jr.; Bolender, J. P.; Smith, W. D.; Supkowski, R. M. J. Am. Chem. Soc. 1997, 119, 5972-5973.
41. (b) Horrocks, W. D., Jr. Methods Enzymol. 1993, 223, 495-538
42. (c) Horrocks, W. D., Jr.; Albin, M. Prog. Inorg. Chem. 1983, 31, 1-104.
43. (d) Horrocks, W. D., Jr.; Sudnick, D. R. Acc. Chem. Res. 1981, 14, 384-392.
44. Diamandis, E. P.; Christopoulos, T. K. Anal. Chem. 1990, 62, 1149-1157.
45. Elbnowski, M.; Makowska, B. J. Photochem. Photobiol. A 1996, 99, 85-92.
46. Meskers, S. C. J.; Dekkers, H. P. J. M. J. Am. Chem. Soc. 1998, 120, 6413-6414.
47. (a) Frey, S. T.; Gong, M. L.; Horrocks, W. D., Jr. Inorg. Chem. 1994, 33, 3229-3234.
48. (b) Frey, S. T.; Horrocks, Jr., W. D. Inorg. Chem. 1991, 30, 1073-1079.
49. (a) Chaudhuri, D.; Horrocks, W. D., Jr.; Amburgey, J. C.; Weber, D. J. Biochemistry 1997, 36, 9674-9680.
50. (b) Frey, S. T.; Gong, M. L.; Horrocks, W. D., Jr. Inorg. Chem. 1994, 33, 3229-3234.
51. (c) Frey, S. T.; Horrocks, Jr., W. D. Inorg. Chem. 1991, 30, 1073-1079.
52. Schlyer, B. D.; Steel, D. G.; Gafni, A. J. Biol. Chem. 1995, 270, 22890-22894.
53. Cierniewski, C. S.; Haas, T. A.; Smith, J. W.; Plow, E. F. Biochemistry 1994, 33, 12238-12246.
54. Balcarová, Z.; Brabec, V. Biophys. Chem. 1989, 33, 55-61.
55. Pearlman, L. F.; Simpkins, H. Biochem. Biophys. Res. Commun. 1985, 131, 1033-1040.
56. Ci, Y.-X.; Li, Y.-Z.; Liu, X.-J. Anal. Chem. 1995, 67, 1785-1788.
57. Selvin, P. R.; Hearst, J. E. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 10024-10028.
58. (a) Li, M.; Selvin, P. R. Bioconjugate Chem. 1997, 8, 127-132.
59. (b) Saha, A. K.; Kross, K.; Kloszewski, E. D.; Upson, D. A.; Toner, J. L.; Snow, R. A.; Black, C. D. V.; Desai, V. C. J. Am. Chem. Soc. 1993, 115, 11032-11033.
60. Ionannou, P. C.; Christopoulos, T. K. Anal. Chem. 1998, 70, 698-702.
61. Hurskainen, P.; Dahlén, P.; Ylikoski, J.; Kwiatkowski, M.; Siitari, H.; Lövgren, T. Nucleic Acids Res. 1991, 19, 1057-1061.
62. Lim, M. J.; Patton, W. F.; Lopez, M. F.; Spofford, K. H.; Shojaee, N.; Shepro, D. Anal. Biochem. 1997, 245, 184-195.
63. Prat, O.; Lopez, E.; Mathis, G. Anal. Biochem. 1991, 195, 283-289.
64. (a) Ci, Y.-X.; Li, Y.-Z.; Chang, W.-B. Fresenius J. Anal. Chem. 1992, 342, 91-94.
65. (a) Nagesh, N.; Bhargava, P.; Chatterji, D. Biopolymers 1992, 32, 1421-1424.
66. (b) Chatterji, D. Biopolymers 1988, 27, 1183-1186.
67. st, were assumed to be equal (Scaiano, J. C. Ed. CRC Handbook of Organic Photochemistry; CRC Press: Boca Raton, FL, 1989; pp 231-237).
68. o ∼ 0.48.
69. Klakamp, S. L.; Horrocks, W. D., Jr. J. Inorg. Biochem. 1992, 46, 175-192.
70. Kumar, K. P.; Chatterji, D. Biochemistry 1990, 29, 317-322.
71. Burroughs, S. E.; Horrocks, W. D., Jr.; Ren, H.; Klee, C. B. Biochemistry 1994, 33, 10428.
72. Ying, L.; Yu, A.; Zhao, X.; Li, Q.; Zhou, D.; Huang, C.; Umetani, S.; Matasai, M. J. Phys. Chem. 1996, 100, 18387-18391.
73. Haupl, T.; Windolph, C.; Jochum, T.; Brede, O.; Hermann, R. Chem. Phys. Lett. 1997, 280, 520-524.
74. Cadet, J.; Vigny, P. In Bioorganic Photochemistry, Photochemistry and the Nucleic Acids; Morrison, H., Ed.; John Wiley & Sons: New York, 1990; Vol. 1, pp 1-272.
75. Nikogosyan, D. N.; Letokhov, V. S. Riv. Nuovo Chim. 1983, 8, 1-72.
76. (a) Crosby, G. A.; Whan, R. E.; Freeman, J. J. J. Phys. Chem. 1962, 66, 2493-2499.
77. (b) Whan, R. E.; Crosby, G. A. J. Mol. Spectrosc. 1962, 8, 315-327.
78. (c) Crosby, G. A.; Whan, R. E.; Alire, R. M. J. Chem. Phys. 1961, 34, 743-748.
79. Bhaumik, M. L.; El-Sayed, M. A. J. Chem. Phys. 1965, 42, 787-788.
80. Ying, L.; Yu, A.; Zhao, X.; Li, Q.; Zhou, D.; Huang, C.; Umetani, S.; Matasai, M. J. Phys. Chem. 1996, 100, 18387-19391.
81. Alaoui, I. M. J. Phys. Chem. 1996, 99, 13280-13282.
82. Latva, M.; Takalo, H.; Mukkala, V.-L.; Matachescu, C.; Rodriguez-Ubis, J. C.; Kanake, J. J. Luminescence 1997, 75, 149-169.
83. Guerón, M.; Eisinger, J.; Shulman, R. G. J. Chem. Phys. 1967, 64, 4077-4091.
84. Gut, I. G.; Wood, P. D.; Redmond, R. W. J. Am. Chem. Soc. 1996, 118, 2366-2373.
85. Daniels, M. In Photochemistry and Photobiology of Nucleic Acids; Wang, S. Y., Ed.; Academic Press: New York, 1976; Vol. 1, pp 23-108.
86. (a) Forsberg, J. H. Coord. Chem. Rev. 1973, 10, 195.
87. (b) Mehrotra, R. C.; Kapoor, P. N.; Batwara, J. M. Coord. Chem. Rev. 1980, 31, 67.
88. Lamture, J. B.; Zhou, Z. H.; Kumar, A. S.; Wensel, T. G. Inorg. Chem. 1995, 34, 864-869.
89. Jones, P. L.; Amoroso, A. J.; Jeffery, J. C.; McCleverty, J. A.; Psillakis, E.; Rees, L. H.; Ward, M. D. Inorg. Chem. 1997, 36, 10-18.
90. (a) Canfi, A.; Bailey, M. P.; Rocks, B. F. Analyst 1989, 114, 1405-1406.
91. (b) Abusaleh, A.; Meares, C. F. Photochem. Photobiol. 1984, 39, 763-769.
92. Song, B.; Siegel, H. Inorg. Chem. 1998, 37, 2066-2069.
93. Tan, Y.-N.; Yang, P.; Li, Q.-S.; Guo, M.-L.; Zhao, M.-G. Polyhedron 1997, 16, 1993-1998.
94. de la Fuente, M.; Cozar, O.; David, L.; Navarro, R.; Hemanz, A.; Bratu, I. Spectrochim. Acta A 1997, 53, 637-641.
95. (a) Ringer, D. P.; Howell, B. A.; Kizer, D. E. Anal. Biochem. 1980, 103, 337-342.
96. (b) Ringer, D. P.; Bruchett, S.; Kizer, D. E. Biochemistry 1978, 17, 4818-4825.
97. Almgren, M.; Grieser, F.; Thomas, J. K. J. Am. Chem. Soc. 1979, 101, 2021.
98. (a) Pikramenou, Z.; Yu, J.-A.; Lessard, R. B.; Ponce, A.; Wong, P. A.; Nocera, D. G. Coord. Chem. Rev. 1994, 132, 181-194.
99. (b) Pikramenou, Z.; Nocera, D. G. Inorg. Chem. 1992, 31, 532-536.
100. Gross, D. S.; Simpkins, H. J. Biol. Chem. 1981, 256, 9593-9598.
101. Cadet, J.; Vigny, P. In Bioorganic Photochemistry: Photochemistry and the Nucleic Acids; Morrison, H., Ed.; John Wiley & Sons: New York, 1990; Vol. 1, pp 1-272.
102. Stryer, L. Biochemistry, 4th ed.; W. H. Freeman: New York, 1995; pp 886-888.