Methylmalonyl-CoA mutase encoding gene of Sinorhizobium meliloti

Gene

Volumn 226, Issue 1, 1999, Pages 121-127

  Charles, Trevor C ^a,b   Aneja, Punita ^a  

^a MCGILL UNIVERSITY   (Canada)

^b UNIVERSITY OF WATERLOO   (Canada)

Author keywords

3 Hydroxybutyrate; Acetoacetate; BhbA; Megaplasmid pRmeSU47b; Polyhydroxyalkanoate metabolism

Indexed keywords

METHYLMALONYL COENZYME A MUTASE;

ARTICLE; BACTERIAL GENE; GENE EXPRESSION REGULATION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SINORHIZOBIUM MELILOTI; TRANSCRIPTION REGULATION;

3-HYDROXYBUTYRIC ACID; AMINO ACID SEQUENCE; BASE SEQUENCE; CARBOXY-LYASES; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; GENE EXPRESSION REGULATION, BACTERIAL; METHYLMALONYL-COA DECARBOXYLASE; METHYLMALONYL-COA MUTASE; MOLECULAR SEQUENCE DATA; MUTAGENESIS; SEQUENCE ANALYSIS, DNA; SINORHIZOBIUM MELILOTI;

EID: 0033534798     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00555-1     Document Type: Article

References (35)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
2. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., Struhl, K., 1997. Current Protocols in Molecular Biology. John Wiley, New York.
3. Bairoch A., Bucher P., Hofman K. The PROSITE database, its status in 1997. Nucleic Acids Res. 25:1997;217-221.
4. Birch A., Leiser A., Robinson J.A. Cloning, sequencing, and expression of the gene encoding methylmalonyl-coenzyme A mutase from Streptomyces cinnamonensis. J. Bacteriol. 175:1993;3511-3519.
5. Charles T.C., Cai G.-Q., Aneja P. Megaplasmid and chromosomal loci for the PHB degradation pathway in Rhizobium (Sinorhizobium) meliloti. Genetics. 146:1997;1211-1220.
6. Charles T.C., Finan T.M. Analysis of a 1600-kilobase Rhizobium meliloti megaplasmid using defined deletions generated in vivo. Genetics. 127:1991;5-20.
7. Charles T.C., Nester E.W. A chromosomally encoded two-component sensory transduction system is required for virulence of Agrobacterium tumefaciens. J. Bacteriol. 175:1993;6614-6625.
8. Charles T.C., Newcomb W., Finan T.M. ndvF, a novel locus located on megaplasmid pRmeSU47b (pEXO) of Rhizobium meliloti, is required for normal nodule development. J. Bacteriol. 173:1991;3981-3992.
9. Charles T.C., Singh R.S., Finan T.M. Lactose utilization and enzymes encoded by megaplasmids in Rhizobium meliloti SU47: implications for population studies. J. Gen. Microbiol. 136:1990;2497-2502.
10. 12-binding domains of methionine synthase. Science. 266:1994;1669-1674.
11. 12-dependent enzymes. Curr. Opin. Struct. Biol. 4:1994;919-929.
12. Finan T.M., Kunkel B., DeVos G.F., Signer E.R. Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes. J. Bacteriol. 167:1986;66-72.
13. Frey J., Krisch H.M. Ω mutagenesis in Gram-negative bacteria: a selectable interposon which is strongly polar in a wide range of bacterial species. Gene. 36:1985;143-150.
14. Gussin G.N., Ronson C.W., Ausubel F.M. Regulation of nitrogen fixation genes. Annu. Rev. Genet. 20:1986;567-591.
15. Haydon D.J., Guest J.R. A new family of bacterial regulatory proteins. FEMS Microbiol. Lett. 79:1991;291-295.
16. Honeycutt R.J., McClelland M., Sobral B.W.S. Physical map of the genome of Rhizobium meliloti 1021. J. Bacteriol. 175:1993;6945-6952.
17. Hynes M.F., Simon R., Muller P., Niehaus K., Labes M., Pühler A. The two megaplasmids of Rhizobium meliloti are involved in the effective nodulation of alfalfa. Mol. Gen. Genet. 202:1986;356-362.
18. Jackson C.A., Kirszbaum L., Dashper S., Reynolds E.C. Cloning, expression and sequence analysis of the genes encoding the heterodimeric methylmalonyl-CoA mutase of Porphyromonas gingivalis W50. Gene. 167:1995;127-132.
19. Jansen R., Kalousek F., Fenton W.A., Rosenberg L.E., Ledley F.D. Cloning of full-length methylmalonyl-CoA mutase from a cDNA library using the polymerase chain reaction. Genomics. 4:1989;198-205.
20. Jones J.D.G., Gutterson N. An efficient mobilizable cosmid vector, pRK7813, and its use in a rapid method for marker exchange in Pseudomonas fluorescens strain HV37a. Gene. 61:1987;299-306.
21. Lamhonwah A.M., Mahuran D., Gravel R.A. Human mitochondrial propionyl-CoA carboxylase: localization of the N-terminus of the pro- and mature alpha chains in the deduced primary sequence of a full-length cDNA. Nucleic Acids Res. 17:1989;4396.
22. 12 cofactors: the proteins make a difference. Structure. 4:1996;505-512.
23. Mancia F., Keep N.H., Nakagawa A., Leadlay P.F., McSweeney S., Rasmussen B., Bösecke P., Diat O., Evans P.R. How coenzyme B12 radicals are generated: the crystal structure of methylmalonyl-coenzyme A mutase at 2 Å resolution. Structure. 4:1996;339-350.
24. Marck C. DNA Strider. A 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Res. 16:1988;1829-1836.
25. Marsh E.N., McKie N., Davis N.K., Leadlay P.F. Cloning and structural characterization of the genes coding for adenosylcobalamin-dependent methylmalonyl-CoA mutase from Propionibacterium shermanii. Biochem. J. 260:1989;345-352.
26. Marsh E.N.G., Holloway D.E. Cloning and sequencing of glutamate mutase component S from Clostridium tetanomorphum: homologies with other cobalamin-dependent enzymes. FEBS Lett. 310:1992;167-170.
27. Meade H.M., Long S.R., Ruvkun G.B., Brown S.E., Ausubel F.M. Physical and genetic characterization of symbiotic and auxotrophic mutants of Rhizobium meliloti induced by transposon mutagenesis. J. Bacteriol. 149:1982;114-122.
28. Roy I., Leadlay P.F. Physical map location of the new Escherichia coli gene sbm. J. Bacteriol. 174:1992;5763-5764.
29. Thompson J.D., Higgins D.G., Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
30. Thöny B., Hennecke H. The -24/-12 promoter comes of age. FEMS Microbiol. Rev. 5:1989;341-357.
31. Valentin H.E., Dennis D. Metabolic pathway for poly(3-hydroxybutyrate-co-3-hydroxybutyrate) formation in Nocardia corallina: inactivation of mutB by chromosomal integration of a kanamycin resistance gene. Appl. Environ. Microbiol. 62:1996;372-379.
32. Watanabe F., Tamura Y., Saido H., Nakano Y. Enzymatic assay for adenosylcobalamin-dependent methylmalonyl coenzyme A mutase. Biosci. Biotechnol. Biochem. 57:1993;1593-1594.
33. 4-dicarboxylate transport and symbiotic nitrogen fixation are located on a megaplasmid. J. Bacteriol. 170:1988;927-934.
34. Wilkemeyer M.F., Crane A.M., Ledley F.D. Primary structure and activity of mouse methylmalonyl-CoA mutase. Biochem. J. 271:1990;449-455.
35. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 33:1985;103-119.