A quadratic discriminant analysis of protein structure classification based on the helix/strand content

Journal of Theoretical Biology

Volumn 201, Issue 3, 1999, Pages 189-199

  Zhang, Chun Ting ^a   Zhang, Ren ^b  

^a TIANJIN UNIVERSITY   (China)

^b KEY LABORATORY OF CANCER PREVENTION AND THERAPY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

GLOBULAR PROTEIN; PROTEIN;

ARTICLE; CLASSIFICATION; DISCRIMINANT ANALYSIS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE;

EID: 0033534028     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.1999.1023     Document Type: Article

References (18)

1. CHOU K.-C. A novel approach to predicting protein structural classes in (20-1)-D amino acid composition space. Proteins: Struct. Funct. Genet. 21:1995;319-344.
2. CHOU K.-C., MAGGIORA G. M. Domain structural class prediction. Protein Engng. 11:1988;523-538.
3. CHOU P. Y. Prediction of protein structural classes from amino acid composition. Fasman G. D. Prediction of Protein structures and the Principles of Protein Conformation. 1989;549-586 Plenum Press, New York.
4. HOLM L., SADER C. Dali/FSSP classification of three-dimensional protein folds. Nucl. Acids Res. 25:1997;231-234.
5. EISENHABER F., FROMMEL C., ARGOS P. Prediction of secondary structural content of proteins from their amino acid composition alone. II. The paradox with secondary structural class. Proteins: Struct. Funct. Genet. 25:1996;169-179.
6. KABSCH W., SANDER C. Dictionary of protein secondary structure: pattern recognition of hydrogen bonded and geometrical feathers. Biopolymers. 22:1983;2577-2637.
7. KLEIN P., DELISI C. Prediction of protein structural classes from amino acids sequence. Biopolymers. 25:1986;1659-1672.
8. KNELLER D. G., COHEN F. E., LANGRIDGE R. Improvements in secondary structure prediction by enhanced neural network. J. Mol. Biol. 214:1990;171-182.
9. LEVITT M., CHOTHIA C. Structural patterns in globular proteins. Nature. 261:1976;552-557.
10. MADIA K. V., KENT J. T., BIBBY J. M. Multivariate Analysis. 1979;Academic Press, London. p. 322, 381.
11. MICHIE A., HUTCHINSON E., LASKOWSKI L., ORENGO C., THORNTON J. Hunter W., Thornton J., Bailey S. Making the Most of Your Model, Proceedings of the CCP4 Study Weekend. 1995;83-94 Council for the Central Laboratory of the Research Councils.
12. MICHIE A. D., ORENGO C. A., THORNTON J. M. Analysis of domain structural class using an automated class assignment protocol. J. Mol. Biol. 262:1996;168-185.
13. MURZIN A. G., BRENNER S. E., HUBBARD T., . CHOTHIA C. SCOP: a structural classification of protein database for the investigation of sequences and structures. J. Mol. Biol. 247:1995;536-540.
14. NAKASHIMA H., NISHIKAWA K., OOI T. The folding type of a protein is relevant to the amino acid composition. J. Biochem. 99:1986;152-162.
15. SHERIDAN R. P., DIXON J. S., VENKATARAGHAVAN R., KUNTZ I. D., SCOTT K. P. Amino acid composition and hydrophobicity pattern of protein domains correlate with their structures. Biopolymers. 24:1985;1995-2023.
16. ZHANG C. T., ZHANG R. A new criterion to classify globular proteins based on their secondary structure contents. Bioinformatics. 14:1998a;857-865.
17. ZHANG C. T., ZHANG R. A new quantitative criterion to distinguish between α/β andα /β proteins (domains ). FEBS Lett. 440:1998b;153-157.
18. ZHOU G. P. An intriguing controversy over protein structural class prediction. J Protein Chem. 17:1998;729-738.