Molecular modeling and design of regioselectively addressable functionalized templates with rigidified three-dimensional structures

Biopolymers

Volumn 50, Issue 4, 1999, Pages 361-372

  Nikiforovich, Gregory V ^a   Mutter, Manfred ^b   Lehmann, Christian ^b  

^a WASHINGTON UNIVERSITY   (United States)

^b UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

Conformational analysis; Cyclopeptides; Molecular modeling; Templates

Indexed keywords

CONFORMATIONS; MOLECULAR ORIENTATION; MOLECULAR STRUCTURE; POLYPEPTIDES;

REGIOSELECTIVELY ADDRESSABLE FUNCTIONALIZED TEMPLATES;

PROTEINS;

AMINO ACID; BICYCLO COMPOUND; CYCLOPEPTIDE;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; DISULFIDE BOND; MOLECULAR MODEL; MOLECULAR STABILITY; PROTEIN STRUCTURE;

AMINO ACID SEQUENCE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; TEMPLATES, GENETIC;

EID: 0033527323     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0282(19991005)50:4<361::AID-BIP2>3.0.CO;2-3     Document Type: Article

References (39)

1. Regan, L.; DeGrado, W. F. Science 1988, 241, 976-978.
2. DeGrado, W. F.; Wassermann, Z. R.; Lear, J. D. Science 1989, 243, 622-628.
3. Hecht, M. H.; Richardson, J. S.; Richardson, D. C.; Ogden, R. C. Science 1990, 249, 884-891.
4. Mutter, M.; Vuilleumier, S. Angew Chem (Engl) 1989, 28, 535-554.
5. Creighton, T. E. Proteins: Structures and Molecular Properties, 2nd ed.; Freemann, New York, 1993.
6. Mutter, M. Trends Biochem Sci 1988, 13, 261-265.
7. Mutter, M.; Tuchscherer, G. Makromol Chem Rapid Commun 1988, 9, 437-443.
8. Dumy, P.; Eggleston, I. M.; Esposito, G.; Nicula, S.; Mutter, M. Biopolymers 1996, 39, 297-308.
9. Dumy, P.; Eggleston, I. M.; Cervigni, S.; Sila, U.; Sun, X.; Mutter, M. Tetrahedron Lett 1995, 36, 1255-1258.
10. Anderson, S.; Andersen, H. L.; Sanders, J. K. M. Ace Chem Res 1993, 26, 469-475.
11. Tuchscherer, G.; Dörner, B.; Sila, U.; Kamber, B.; Mutter, M. Tetrahedron 1993, 49, 3559-3575.
12. Scheibler, L.; Dumy, P.; Stamou, D.; Duschl, C.; Vogel, H.; Mutter, M. Tetrahedron 1998, 54, 3725-3734.
13. Mutter, M.; Tuchscherer, G.; Miller, C.; Altmann, K.-H.; Carey, R. I.; Wyss, D. F.; Labhardt, A.; Rivier, J. E. J Am Chem Soc 1992, 114, 1463-1470.
14. Tuchscherer, G.; Servis, C.; Rivier, J.; Blum, U.; Corradin, G.; Mutter, M. Protein Sci 1992, 1, 1377-1386.
15. Mutter, M.; Dumy, P.; Garrouste, P.; Lehmann, C.; Mathieu, M.; Peggion, C.; Peluso, S.; Razaname, A.; Tuchscherer, G. Angew Chem (Engl) 1996, 35, 1481-1485.
16. Nikiforovich, G. V.; Prakash, O.; Gehrig, C. A.; Hruby, V. J. J Am Chem Soc 1993, 115, 3399-3406.
17. Nikiforovich, G. V. Int J Peptide Protein Res 1994, 44, 513-531.
18. Floegel, R.; Mutter, M. Biopolymers 1992, 32, 1283-1310.
19. Mierke, D. F.; Kurz, M.; Kessler, H. J Am Chem Soc 1994, 116, 1042-1049.
20. Gerber, P. R.; Müller, K. J Comput-Aided Mol Design 1995, 9, 251-268.
21. Gerber, P. R. J Comput-Aided Mol Design 1998, 12, 37-51.
22. Dunfield, L. G.; Burgess, A. W.; Scheraga, H. A. J Phys Chem 1978, 82, 2609-2616.
23. Nemethy, G.; Pottle, M. S.; Scheraga, H. A. J Phys Chem 1983, 87, 1883-1887.
24. Chalmers, D. K.; Marshall, G. R. J Am Chem Soc 1995, 117, 5927-5937.
25. Bosch, R.; Jung, G.; Schmitt, H.; Winter, W. Biopolymers 1985, 24, 979-999.
26. Zimmerman, S. S.; Scheraga, H. A. Biopolymers 1977, 16, 811-843.
27. Nikiforovich, G. V.; Hruby, V. J.; Prakash, O.; Gehrig, C. A. Biopolymers 1991, 31, 941-955.
28. Wüthrich, K. NMR of Proteins and Nucleic Acids; John Wiley: New York, 1986.
29. Hagler, A. T.; Huler, E.; Lifson, S. J Am Chem Soc 1974, 96, 5319-5327.
30. Schwyzer, R.; Ludescher, U. Helv Chim Acta 1969, 52, 2033-2040.
31. Llinas, M.; Klein, M. P. J Am Chem Soc 1975, 97, 4731-4737.
32. Wilmot, C. M.; Thornton, J. M. Protein Eng 1990, 3, 479-493.
33. Nikiforovich, G. V.; Vesterman, B.; Betins, J.; Podins, L. J Biomol Struct Dyn 1987, 4, 1119-1135.
34. Rose, G. D.; Gierasch, L. M.; Smith, J. A. Adv Protein Chem 1985, 37, 1-109.
35. Bean, J. W.; Kopple, K. D.; Peishoff, C. E. J Am Chem Soc 1992, 114, 5328-5334.
36. Karle, I. L.; Awasthi, S. K.; Balaram, P. Proc Natl Acad Sci USA 1996, 93, 8189-8193.
37. Haque, T. S.; Gellman, S. H. J Am Chem Soc 1997, 119, 2303-2304.
38. Späth, J.; Stuart, F.; Jiang, L.; Robinson, J. A. Helv Chim Acta 1998, 81, 1726-1738.
39. Tishchenko, G. N.; Andrianov, V. I.; Vainstein, B. K.; Woolfson, M. M.; Dodson, E. Acta Cryst Section D Biol Crystall 1997, 53 (part 2), 151-159.