Molecular modeling of human procathepsin E: Analysis of salt-bridge interactions between propeptide and enzyme segment

Biochemical and Biophysical Research Communications

Volumn 264, Issue 3, 1999, Pages 825-832

  Azim, M Kamran ^a   Zaidi, Zafar H ^a  

^a UNIVERSITY OF KARACHI   (Pakistan)

Author keywords

Aspartic proteinase; Cathepsin E; Homology modeling; Salt bridge interactions; Structure prediction; Zymogen

Indexed keywords

CATHEPSIN E; PEPSINOGEN;

ARTICLE; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; HUMAN; HYDROGEN BOND; MOLECULAR INTERACTION; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN FOLDING;

SUIDAE;

EID: 0033517724     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1006/bbrc.1999.1382     Document Type: Article

References (38)

1. Takeda-Ezaki M., Yamamoto K. Arch. Biochem. Biophys. 304:1993;352-358.
2. Bennett K., Levine T., Ellis J. S., Peanasky R. J., Samloff I. M., Kay J., Chain B. M. Eur. J. Immunol. 22:1992;1519-1524.
3. Lees W. E., Kalinka S., Meech J., Capper S. J., Cook N. D., Kay J. FEBS Lett. 273:1990;99-102.
4. Clements G. J., Price-Jones M. J., Stephens P. E., Sutton C., Schultz TT. F., Clapham P. R., McKeating J. A., McClure M. O., Thomson S., Marsh M., Kay J., Weiss R. A., Moore J. P. Aids Res. Hum. Retroviruses. 7:1991;3-16.
5. Azuma T., Pals G., Mohandas T. K., Couvrer J. M., Taggart R. T. J. Biol. Chem. 264:1989;16748-16753.
6. Khan A. R., James M. N. G. Protein Sci. 7:1998;815-836.
7. Abola E. E., Bernstein F. C., Bryant S. H., Koetzle T. F., Weng T. Allen F. H., Bergerkoff G., Sievers R. Crystallographic Databases - Information, Content, Software Systems, Scientific Applications. 1987;107-132 Data Commission of the International Union of Crystallography, Bonn, Cambridge, Chester.
8. James M. N. G., Sielecki A. R. Nature. 319:1986;33-38.
9. Hertsuck J. A., Koelsch G., Remington S. J. Proteins. 13:1992;1-25.
10. Sielecki A. R., Fujinaga M., Read R. J., James M. N. G. J. Mol. Biol. 219:1991;671-692.
11. Moore S. A., Sielecki A. R., Chernaia M. M., Tarasova N. I., James M. N. G. J. Mol. Biol. 247:1995;466-485.
12. Foltmann B. Biol. Chem. Hoppe-Seyler. 369:1988;311-314.
13. Koelsch G., Mares M., Metcalf P., Fusek M. FEBS Lett. 343:1994;6-10.
14. Kageyama T., Ichinose M., Tsukada S., Miki K., Kurokawa K., Koiwai O., Tanji M., Yakabe E., Athauda S. B. P., Takahashi K. J. Biol. Chem. 267:1992;16450-16459.
15. Bairoch A., Boeckmann B. Nucleic Acids Res. 19:1991;2247-2249.
16. George D. G., Barker W. C., Hunt L. T. Nucleic Acids Res. 14:1986;11-15.
17. Pearson W. R. Methods Enzymol. 183:1990;63-98.
18. Pearson W. R., Lipman D. J. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
19. Althschul S. F., Madden T. L., Schffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. Nucleic Acids Res. 25:1997;3389-3402.
20. Corpet F. Nucleic Acid Res. 16:1988;10881-10890.
21. Rost B. Methods Enzymol. 266:1996;525-539.
22. Burkhard R., Sander C. Proc. Natl. Acad. Sci. USA. 90:1993;7558-7562.
23. Sali A., Blundell T. L. Bohr H., Brunak S. Protein Structure by Distance Analysis. 1994;64-84 IOS Press, Amsterdam.
24. Sali A., Blundell T. L. J. Mol. Biol. 234:1993;779-815.
25. Sali A., Potterton L., Yuan F., van Vlijmen H., Karplus M. Proteins. 23:1995;318-326.
26. Laskowski R. A., Mc Arthur M. W., Moss D. S., Thornton J. M. J. Appl. Cryst. 26:1993;283-291.
27. Cooper J. B., Khan G., Taylor G., Tickle I. J., Blundell T. L. J. Mol. Biol. 214:1990;199-222.
28. Abad-Zapatero C., Rydel T. J., Erickson J. Proteins. 8:1990;62-81.
29. Metcalf P., Fusek M. EMBO J. 12:1993;1293-1302.
30. Baldwin E. T., Bhat T. N., Gulnik S., Hosur M. V., Sowder R. C., Cachau R. E., Collins J., Silva A. M., Erickson J. W. Proc. Natl. Acad. Sci. USA. 90:1993;7669-6800.
31. Blundell T. L., Cooper J. B., Sali A., Zhu Z.-Y. Dunn B. M. Structure and Function of the Aspartic Proteinases: Genetics, Structures and Mechanisms. 1991;443-453 Plenum, New York.
32. Tang J., James M. N. G., Hsu I. N., Jenkins J. A., Blundell T. L. Nature. 271:1978;618-621.
33. Blundell T. L., Johnson M. S. Protein Sci. 2:1993;877-883.
34. Dhanaraj V., Dealwis C., Frazao C., Badasso M., Sibanda B. L., Tickle I. J., Cooper J. B., Driessen H. B. C., Newman M., Aguilar C. Nature. 357:1992;466-472.
35. Davies D. R. Annu. Rev. Biophys. Biophys. Chem. 19:1990;189-215.
36. Glick D. M., Shalitin Y., Hitt C. R. Biochemistry. 28:1989;2626-2630.
37. Auer H. E., Glick D. M. Biochemistry. 23:1984;2735-2739.
38. Foltmann B., Jensen A. L. Eur. J. Biochem. 128:1982;63-70.