Conformational flexibility of a ubiquitin conjugation enzyme (E2)

Biochemistry

Volumn 38, Issue 5, 1999, Pages 1415-1425

  Liu, Qin ^a,b   Yuan, Yate Ching ^b   Shen, Binghui ^b   Chen, David J ^a   Chen, Yuan ^b  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEUTERIUM; DNA; HYDROGEN; NITROGEN 15; PROTEIN; PROTEIN P53; UBIQUITIN; UBIQUITIN CONJUGATING ENZYME;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; CARBOXY TERMINAL SEQUENCE; CATALYSIS; ENZYME CONFORMATION; ENZYME SPECIFICITY; ENZYME STRUCTURE; FOURIER TRANSFORMATION; HUMAN; MOLECULAR RECOGNITION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL;

AMIDES; ANISOTROPY; BINDING SITES; COMPUTER SIMULATION; DIMERIZATION; HUMANS; LIGASES; MODELS, MOLECULAR; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTONS; SUBSTRATE SPECIFICITY; UBIQUITIN-CONJUGATING ENZYMES; UBIQUITINS;

EID: 0033514354     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi981840h     Document Type: Article

References (48)

1. Jentsch, S. (1992) Annu. Rev. Genet. 26, 179-207.
2. Hass, A. L., and Siepmann (1997) FASEB J. 11, 1257-1268.
3. Varshavsky, A. (1997) Trends Biochem. Sci. 22, 383-387.
4. Seufert, W., Futcher, B., and Jentsch, S. (1995) Nature 373, 78-81.
5. Barinaga, M. (1995) Science 269, 631-632.
6. Pagano, M., Tam, S. W., Theodoras, A. M., Beer-Romero, P., Del Sal, G., Chau, V., Yew, P. R., Graetta, G. F., and Rolfe, M. (1995) Science 269, 682-685.
7. Haas, A. L., Baboshina, O., Williams, B., and Schwartz, L. M. (1995) J. Biol. Chem. 270, 9407-9412.
8. Wiebel, F. F., and Kunau, W. H. (1992) Nature 359, 73-76.
9. Finley, D. and Chau, V. (1991) Annu. Rev. Cell Biol. 7, 25-69.
10. Sommer, T., and Jentsch, S. (1993) Nature 365, 176-179.
11. Saitoh, H., Pu, R. T., and Dasso, M. (1997) Trends Biochem. Sci. 22, 374-376.
12. Haas, A. L., Ahrens, P., Bright, P. M., and Ankel, H. (1987) J. Biol. Chem. 262, 11315-11323.
13. Kumar, S., Yoshida, Y., and Noda, M. (1993) Biochem. Biophys. Res. Commun. 195, 393-399.
14. Caliis, J., Carpenter, T., Sun, C. W., and Viestra, R. D. (1995) Genetics 139, 921-939.
15. Johnson, E. S., Schwienhorst, I., Dohmen, R. J., and Blobel, G. (1997) EMBO J. 16, 5509-5519.
16. Seufert, W., and Jentsch, S. (1990) EMBO J. 9, 543-550.
17. Seufert, W., McGrath, J. P., and Jentsch, S. (1990) EMBO J. 9, 4535-4541.
18. Shen, Z., Pardington-Purtymun, P. E., Comeaux, J. C., Moyzis, R. K., and Chen, D. J. (1996) Genomics 37, 183-186.
19. Al-Khodairy, F., Enoch, T., Hagan, I. M., and Carr, A. (1995) Am. J. Cell Sci. 108, 475-486.
20. Gottlicher, M., Heck, S., Doucas, B., Wade, E., Kullmann, M., Cato, A. C. B., Evans, R. M., and Herrlich, P. (1996) Steroids 61, 257-262.
21. Wang, Z. Y., Qui, Q. Q., Seufert, W., Taguchi, T., Testa, J. R., Whitmore, S. A., Callen, D. F., Welsh, W., Shenk, T., and Deuel, T. G. (1996) J. Biol. Chem. 271, 24811-24816.
22. Yasugi, T., and Howley, P. (1996) Nucleic Acids Res. 24, 2005-2010.
23. Hateboer, G., Hijmans, E. M., Nooij, J. B. D., Schlenker, S., Jentsch, S., and Bernards, R. (1996) J. Biol. Chem. 271, 25906-25911.
24. Tong, H., Hateboer, G., Perrakis, A., Bernards, R., and Sixma, T. K. (1997) J. Biol. Chem. 272, 21381-21387.
25. Cook, W. J., Jeffrey, L. C., Sullivan, M. L., and Vierstra, R. D. (1992) J. Biol Chem. 267, 15116-15121.
26. Cook, W. J., Jeffrey, L. C., Xu, Y., and Chau, V. (1993) Biochemistry 32, 13809-13817.
27. Cook, W. J., Martin, P. D., Edwards, B. F. P., Yamazaki, R. K., and Chau, V. (1997) Biochemistry 36, 1621-1627.
28. Sullivan, M. L., and Vierstra, R. D. (1991) J. Biol. Chem. 266, 23878-23885.
29. Dayie, K. T., Wagner, G., and Lefèvre, J. F. (1996) Annu. Rev. Phys. Chem. 47, 243-282.
30. Englander, J. J., Englander, S. W., Louie, G., Roder, H., Tran, T., and Wand, A. J. (1988) Protein hydrogen exchange, dynamics, and energetics, in Structure & Expression, Volume I: From Proteins to Ribosomes (Sarma, R. H., and Sarma, M. H., Eds.), pp 107-117.
31. Liu, Q., Shen, B. H., Chen, D. J., and Chen, Y. (1998) J. Biomol. NMR (in press).
32. Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., Shoelson, S. E., Pawson, T., Forman-Kay, J. D., and Kay, L. E. (1994) Biochemistry 33, 5984-6003.
33. Jones, J. A. (1997) J. Magn. Reson. 126, 282-286.
34. Abragam, A. (1961) Principles of Nuclear Magnetism, Clarendon Press, Oxford, U.K.
35. Clore, G. M., Szabo, A., Bax, A., Kay, L. E., Driscoll, P. C., and Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 4989.
36. Lipari, G., and Szabo, A. (1992) J. Am. Chem. Soc. 114, 4546-4559; 4559-4570.
37. Mandel, A. M., Akke, M., and Palmer, A. G. (1994) J. Mol. Biol. 246, 144-163.
38. Brüschweiler, R., Liao, X., and Wright, P. E. (1995) Science 268, 886-889.
39. Tjandra, N., Feller, S. E., Pastor, R. W., and Bax, A. (1995) J. Am. Chem. Soc. 117, 12562-12566.
40. Zheng, Z., Czaplicki, J., and Jardetzky, O. (1995) Biochemistry 34, 5212-5223.
41. Schurr, J. M., Babcock, H. P., and Fujimoto, B. S. (1994) J. Magn. Reson., Ser. B 105, 211-224.
42. Woessner, D. E. (1962) J. Chem. Phys. 37, 647-654.
43. Silver, E. T., Gwozd, T. J., Ptak, C., Goebl, M., and Ellison, M. I. (1992) EMBO J. 11, 3091-3098.
44. Chen, P., Johnson, P., Sommer, T., Jentsch, S., and Hochstrasser, M. (1993) Cell 74, 357-369.
45. Ptak, C., Prendergast, J. A., Hodgins, R., Kay, C. M., Chau, V., and Ellison, M. J. (1994) J. Biol. Chem. 269, 26539-26545.
46. Gwozd, C. S., Arnason, T. G., Cook, W. J., Chau, V., and Ellison, M. J. (1995) Biochemistry 34, 6296-6302.
47. Wennerström, H. (1972) Mol. Phys. 24, 69-80.
48. Prendergast, J. A., Ptak, C., Arnason, T. G., and Ellison, M. J. (1993) J. Biol. Chem. 270, 9347-9352.