메뉴 건너뛰기




Volumn 74, Issue 6, 1999, Pages 299-307

Identification and phylogenetic analysis of gypsy-type retrotransposons in the plant kingdom

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE ISOLATION; GENOME; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RETROPOSON;

EID: 0033512803     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.74.299     Document Type: Article
Times cited : (48)

References (35)
  • 1
    • 0029186929 scopus 로고
    • Skippy, a retrotransposon from the fungal plant pathogen Fusarium oxysporum
    • Anaya, N., and Roncero, M. I. (1995) Skippy, a retrotransposon from the fungal plant pathogen Fusarium oxysporum. Mol. Gen. Genet. 249, 637-647.
    • (1995) Mol. Gen. Genet. , vol.249 , pp. 637-647
    • Anaya, N.1    Roncero, M.I.2
  • 3
    • 0032573174 scopus 로고    scopus 로고
    • Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions
    • Ananiev, E. V., Phillip, R. L., and Rines, H. W. (1998) Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions. Proc. Natl. Acad. Sci. USA 95, 13073-13078.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 13073-13078
    • Ananiev, E.V.1    Phillip, R.L.2    Rines, H.W.3
  • 4
    • 0030246842 scopus 로고    scopus 로고
    • The contributions of retroelements to plant genome organization, function and evolution
    • Bennetzen, J. L. (1996) The contributions of retroelements to plant genome organization, function and evolution. Trends Microbiol. 4, 347-353.
    • (1996) Trends Microbiol. , vol.4 , pp. 347-353
    • Bennetzen, J.L.1
  • 5
    • 0002949584 scopus 로고
    • Retrotransposons and the FB transposon from Drosophila melanogaster
    • eds.:D. E. Berg and M. M. Howe, American Society for Microbiology, Washington DC
    • Bingham, P. M., and Zachar, Z. (1989) Retrotransposons and the FB transposon from Drosophila melanogaster. In: Mobile DNA(eds.:D. E. Berg and M. M. Howe), pp. 485-502. American Society for Microbiology, Washington DC.
    • (1989) Mobile DNA , pp. 485-502
    • Bingham, P.M.1    Zachar, Z.2
  • 6
    • 0032080884 scopus 로고    scopus 로고
    • Structure and evolution of Cyclops: A novel giant retrotransposon of the Ty3/Gypsy family highly amplified in pea and other legume species
    • Chavanne, F., Zhang, D. X., Liaud, M. F., and Cerff, R. (1998) Structure and evolution of Cyclops: a novel giant retrotransposon of the Ty3/Gypsy family highly amplified in pea and other legume species. Plant Mol. Biol. 37, 363-375.
    • (1998) Plant Mol. Biol. , vol.37 , pp. 363-375
    • Chavanne, F.1    Zhang, D.X.2    Liaud, M.F.3    Cerff, R.4
  • 7
    • 0023734473 scopus 로고
    • Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases
    • Clark, J. M. (1988) Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases. Nucl. Acids Res. 16, 9677-9686.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 9677-9686
    • Clark, J.M.1
  • 8
    • 0029808061 scopus 로고    scopus 로고
    • MAGGY, a retrotransposon in the genome of rice blast fungus Magnaporthe grisea
    • Farman, M. L., Tosa, Y., Nitta, N., and Leong, S. A. (1996) MAGGY, a retrotransposon in the genome of rice blast fungus Magnaporthe grisea. Mol. Gen. Genet. 251, 665-674.
    • (1996) Mol. Gen. Genet. , vol.251 , pp. 665-674
    • Farman, M.L.1    Tosa, Y.2    Nitta, N.3    Leong, S.A.4
  • 10
    • 0026741959 scopus 로고
    • Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants
    • Flavell, A. J., Dunbar, E., Anderson, R., Pearce, S. R., Hartley, R., and Kumar, A. (1992) Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucl. Acid Res. 20, 3639-3644.
    • (1992) Nucl. Acid Res. , vol.20 , pp. 3639-3644
    • Flavell, A.J.1    Dunbar, E.2    Anderson, R.3    Pearce, S.R.4    Hartley, R.5    Kumar, A.6
  • 11
    • 0029559511 scopus 로고
    • Cereal genome evolution: Pastoral pursuits with 'lego' genomes
    • Graham, M. (1995) Cereal genome evolution: pastoral pursuits with 'Lego' genomes. Curr. Opi. Genet. Develop. 5, 717-724.
    • (1995) Curr. Opi. Genet. Develop. , vol.5 , pp. 717-724
    • Graham, M.1
  • 12
    • 0026610402 scopus 로고
    • Ty3 GAG3 and POL3 genes encode the components of intracellular particles
    • Hansen, L. J., Chalker, D. L., Orlinsky, K. J., and Sandmeyer, S. B. (1992) Ty3 GAG3 and POL3 genes encode the components of intracellular particles. J. Virol. 66, 1414-1424.
    • (1992) J. Virol. , vol.66 , pp. 1414-1424
    • Hansen, L.J.1    Chalker, D.L.2    Orlinsky, K.J.3    Sandmeyer, S.B.4
  • 13
    • 0027277083 scopus 로고
    • Ty1-copia group retrotransposons as ubiquitous components of plant genomes
    • Hirochika, H., and Hirochika, R. (1993) Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn. J. Genet. 68, 35-46.
    • (1993) Jpn. J. Genet. , vol.68 , pp. 35-46
    • Hirochika, H.1    Hirochika, R.2
  • 14
    • 0032956461 scopus 로고    scopus 로고
    • Identification and characterization of novel retrotransposons of gypsy type in rice
    • Kumekawa, N., Ohtsubo, H., Horiuchi, T., and Ohtsubo, E. (1999) Identification and characterization of novel retrotransposons of gypsy type in rice. Mol. Gen. Genet. 260, 593-602.
    • (1999) Mol. Gen. Genet. , vol.260 , pp. 593-602
    • Kumekawa, N.1    Ohtsubo, H.2    Horiuchi, T.3    Ohtsubo, E.4
  • 16
    • 0022650639 scopus 로고
    • The Drosophila melanogaster gypsy transposable element encodes putative gene products homologous to retroviral proteins
    • Marlor, R. L., Parkhurst, S. M., and Corces, V. G. (1986) The Drosophila melanogaster gypsy transposable element encodes putative gene products homologous to retroviral proteins. Mol. Cell. Biol. 6, 1129-1134.
    • (1986) Mol. Cell. Biol. , vol.6 , pp. 1129-1134
    • Marlor, R.L.1    Parkhurst, S.M.2    Corces, V.G.3
  • 18
    • 0020645043 scopus 로고
    • New M13 vectors for cloning
    • Messing, J. (1983) New M13 vectors for cloning. Methods Enzymol. 101, 20-78.
    • (1983) Methods Enzymol. , vol.101 , pp. 20-78
    • Messing, J.1
  • 19
    • 0021879662 scopus 로고
    • Complete nucleotide sequence of the Drosophila transposable element copia: Homology between copia and retroviral proteins
    • Mount, S. M., and Rubin, G. M. (1985) Complete nucleotide sequence of the Drosophila transposable element copia: homology between copia and retroviral proteins. Mol. Cell. Biol. 5, 1630-1638.
    • (1985) Mol. Cell. Biol. , vol.5 , pp. 1630-1638
    • Mount, S.M.1    Rubin, G.M.2
  • 20
    • 0030424669 scopus 로고    scopus 로고
    • Identification and characterization of two tandem repeat sequences (TrsB and TrsC) and a retrotransposon (RIRE1) as genome-general sequences in rice
    • Nakajima, R., Noma, K., Ohtsubo, H., and Ohtsubo, E. (1996) Identification and characterization of two tandem repeat sequences (TrsB and TrsC) and a retrotransposon (RIRE1) as genome-general sequences in rice. Genes Genet. Syst. 71, 373-382.
    • (1996) Genes Genet. Syst. , vol.71 , pp. 373-382
    • Nakajima, R.1    Noma, K.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 21
    • 0032135040 scopus 로고    scopus 로고
    • Construction of a BAC library of the rice blast fungus Magnaporthe grisea and finding specific genome regions in which its transposons tend to cluster
    • Nishimura, M., Nakamura, S., Hayashi, N., Asakawa, S., Shimizu, N., Kaku, H., Hasebe, A., and Kawasaki, S. (1998.) Construction of a BAC library of the rice blast fungus Magnaporthe grisea and finding specific genome regions in which its transposons tend to cluster. Biosci. Biotechnol. Biochem. 62, 1515-1521.
    • (1998) Biosci. Biotechnol. Biochem. , vol.62 , pp. 1515-1521
    • Nishimura, M.1    Nakamura, S.2    Hayashi, N.3    Asakawa, S.4    Shimizu, N.5    Kaku, H.6    Hasebe, A.7    Kawasaki, S.8
  • 22
    • 0039415336 scopus 로고    scopus 로고
    • A full length Ty3/ gypsy-type retrotransposon in the fern Adiantum
    • Nozue, K., Kanegae, T., and Wada, M. (1997) A full length Ty3/ gypsy-type retrotransposon in the fern Adiantum. J. Plant Res. 110, 495-499.
    • (1997) J. Plant Res. , vol.110 , pp. 495-499
    • Nozue, K.1    Kanegae, T.2    Wada, M.3
  • 23
    • 0033149858 scopus 로고    scopus 로고
    • RIRE2, a novel gypsy-type retrotransposon from rice
    • Ohtsubo, H., Kumekawa, N., and Ohtsubo, E. (1999) RIRE2, a novel gypsy-type retrotransposon from rice. Genes Genet. Syst. 74, 83-91.
    • (1999) Genes Genet. Syst. , vol.74 , pp. 83-91
    • Ohtsubo, H.1    Kumekawa, N.2    Ohtsubo, E.3
  • 24
    • 0025763575 scopus 로고
    • Organization of DNA sequences highly repeated in tandem in rice genomes
    • Ohtsubo, H., Umeda, M., and Ohtsubo, E. (1991) Organization of DNA sequences highly repeated in tandem in rice genomes. Jpn. J. Genet. 66, 241-254.
    • (1991) Jpn. J. Genet. , vol.66 , pp. 241-254
    • Ohtsubo, H.1    Umeda, M.2    Ohtsubo, E.3
  • 25
    • 2642665514 scopus 로고    scopus 로고
    • A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome
    • Panstruga, R., Bustles, R., Piffanelli, P., and Schulze-Lefert, P. (1998) A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome. Nucl. Acids Res. 26, 1056-1062.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 1056-1062
    • Panstruga, R.1    Bustles, R.2    Piffanelli, P.3    Schulze-Lefert, P.4
  • 26
    • 0032419941 scopus 로고    scopus 로고
    • A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes
    • Presting, G. G., Malysheva, L., Fuchs, J., and Schubert, I. (1998) A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes. Plant J. 16, 721-728.
    • (1998) Plant J. , vol.16 , pp. 721-728
    • Presting, G.G.1    Malysheva, L.2    Fuchs, J.3    Schubert, I.4
  • 27
    • 0032032181 scopus 로고    scopus 로고
    • Slow-growing and oligotraphic soil bacteria phylogenetically close to Bradyrhizobium japonicum
    • Saitoh, A., Mitsui, H., Hattori, R., Minamisawa, K., and Hattori, T. (1998) Slow-growing and oligotraphic soil bacteria phylogenetically close to Bradyrhizobium japonicum. FEMA Microbiol. Ecology 25, 277-286.
    • (1998) FEMA Microbiol. Ecology , vol.25 , pp. 277-286
    • Saitoh, A.1    Mitsui, H.2    Hattori, R.3    Minamisawa, K.4    Hattori, T.5
  • 29
    • 0024706325 scopus 로고
    • Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila
    • Smyth, D. R., Kalitsis, P., Joseph, J. L., and Sentry, J. W, (1989) Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila. Proc. Natl. Acad. Sci. USA 86, 5015-5019.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 5015-5019
    • Smyth, D.R.1    Kalitsis, P.2    Joseph, J.L.3    Sentry, J.W.4
  • 30
    • 0032033103 scopus 로고    scopus 로고
    • Gypsy like retrotransposons are widespread in the plant kingdom
    • Suoniemi, A., Tanskanen, J., and Schulman, A. H. (1998) Gypsy like retrotransposons are widespread in the plant kingdom. Plant J. 13, 699-705.
    • (1998) Plant J. , vol.13 , pp. 699-705
    • Suoniemi, A.1    Tanskanen, J.2    Schulman, A.H.3
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22, 4673-4680.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
    • 0032189092 scopus 로고    scopus 로고
    • Retrotransposon-like sequences integrated into the genome of pineapple, Ananas comosus
    • Thomson, K. G., Thomas, J. E., and Dietzgen, R. G. (1998) Retrotransposon-like sequences integrated into the genome of pineapple, Ananas comosus. Plant Mol. Biol. 38, 461-465.
    • (1998) Plant Mol. Biol. , vol.38 , pp. 461-465
    • Thomson, K.G.1    Thomas, J.E.2    Dietzgen, R.G.3
  • 33
    • 0002915381 scopus 로고
    • Retroviruses
    • eds.: D. E. Berg, and M. M. Howe, American Society for Microbiology, Washington DC
    • Varmus, H., and Brown, P. (1989) Retroviruses. In: Mobile DNA (eds.: D. E. Berg, and M. M. Howe), pp. 53-108. American Society for Microbiology, Washington DC,
    • (1989) Mobile DNA , pp. 53-108
    • Varmus, H.1    Brown, P.2
  • 35
    • 0031747556 scopus 로고    scopus 로고
    • Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/ gypsy retrotransposons that encode envelope-like proteins
    • Wright, D. A., and Voytas, D. F. (1998) Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/ gypsy retrotransposons that encode envelope-like proteins. Genetics 149, 703-715.
    • (1998) Genetics , vol.149 , pp. 703-715
    • Wright, D.A.1    Voytas, D.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.