Marker-QTL linkage detection in self-families of outbred populations

Silvae Genetica

Volumn 48, Issue 5, 1999, Pages 227-234

  Kumar, Satish ^a,b   Burdon, R D ^a   Garrick, D J ^b  

^a SCION   (New Zealand)

^b MASSEY UNIVERSITY   (New Zealand)

Author keywords

Inbreeding; Molecular marker; Outbred; QTL; Selfing

Indexed keywords

ALLELE; ANALYSIS OF VARIANCE; FOREST TREE; GENE EXPRESSION; GENE LOCUS; GENETIC CROSS; GENETIC LINKAGE; GENETIC MARKER; GENETIC TRAIT; INBREEDING; OUTBREEDING; PLANT GENETICS; PLANT GROWTH; QUANTITATIVE TRAIT; SELFING;

EID: 0033510454     PISSN: 00375349     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. BARKER, J. E. and LIBBY, W. J.: The use of selfing in selection of forest trees. Journal of Genetics 61: 152-168 (1974).
2. BURDON, R. D. and RUSSELL, J. H.: Inbreeding depression in selfing experiments: Statistical issues. Forest Genetics 5(3): 179-189 (1998).
3. CHARLESWORTH, D. and CHARLESWORTH, B.: Inbreeding depression and its evolutionary consequences. Annual Review of Ecological Systems 18: 237-268 (1987).
4. FRANKLIN, E. C.: Survey of mutant forms. USDA Forest Service Research Paper SE-61. 21 p. (1970).
5. FRANKLIN, E. C.: Genetic load in loblolly pine. American Naturalist 106: 262-265 (1972).
6. FU, Y. B. and RITLAND, K.: On estimation of linkage of marker genes to viability genes controlling inbreeding depression. Theoretical and Applied Genetics 88: 925-932 (1994a).
7. FU, Y. B. and RITLAND, K.: Marker-based inferences about fecundity genes contributing to inbreeding depression in Mimulus guttatus. Genome 37: 1005-1010 (1994b).
8. HEDRICK, P. W. and MUONA, O.: Linkage of viability genes to marker loci in selfing organisms. Heredity 64: 67-72 (1990).
9. HILL, A. P.: Quantitative linkage: a statistical procedure for its detection and estimation. Annals of Human Genetics 38: 439-449 (1975).
10. HUSBAND, B. C. and SCHEMSKE, D. W.: Evolution of the magnitude and timing of inbreeding depression in plants. Evolution 50: 54-70 (1996).
11. JAYAKAR, S. D.: On the detection and estimation of linkage between a locus influencing a quantitative character and a marker locus. Biometrics 26: 451-464 (1970).
12. KEMPTHORNE, O.: An introduction to genetic statistics. Iowa State University Press, Ames, IA, USA. 545 p. (1973).
13. KNOTT, S. A., ELSEN, J. M. and HALEY, C. S.: Methods for multiple marker mapping of quantitative trait loci in halfsib populations. Theoretical and Applied Genetics 93: 71-80 (1996).
14. KUANG, H., RICHARDSON, T. E., CARSON, S. D. and BONGARTEN, B. C.: An allele responsible for seedling death in Pinus radiata D. DON. Theoretical and Applied Genetics 96: 640-644 (1998).
15. KUMAR, S., CARSON, S. D. and GARRICK, D. J.: Detecting linkage between a fully-informative marker locus and a trait locus in outbred populations using analysis of variance. (Submitted to Forest Genetics) (1998).
16. LANDER, E. S. and BOTSTEIN, D.: Mapping MENDELian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199 (1989).
17. LINDGREN, D.: Use of selfed material in forest tree improvement. Department of Forest Genetics, Royal College of Forestry, Research Notes No. 15. 76 p. Stockholm, Sweden (1975).
18. LUO, Z. W.: The power of two experimental designs for detecting linkage between a marker locus and a locus affecting a quantitative character in a segregating population. Genetics Selection Evolution 25: 249-261 (1993).
19. MUONA, O., YAZDANI, R. and RUDIN, D.: Genetic changes between life stages in Pinus sylvestris: Allozyme variation in seeds and planted seedlings. Silvae Genetica 36: 39-42 (1987).
20. MURANTY, H.: Power of tests for quantitative trait loci detection using full-sib families in different schemes. Heredity 76: 156-165 (1996).
21. PLESSAS, M. E. and STRAUSS, S. H.: Allozyme differentiation among populations, stands and cohorts in Monterey pine. Canadian Journal of Forest Research 16: 1155-1164 (1986).
22. PLOMION, C., DUREL, C.-E. and O'MALLEY, D. M.: Genetic dissection of height in maritime pine seedlings raised under accelerated growth conditions. Theoretical and Applied Genetics 93: 849-858 (1996).
23. SCHAFER-PREGL, R., SALAMINI, S. and GEBHARDT, C.: Models for mapping quantitative trait loci (QTL) in progeny of non-inbred parents and their behaviour in presence of distorted segregation ratios. Genetical Research Cambridge 67: 43-54 (1996).
24. SKRØPPA, T.: Diallel crosses in Picea abies. II. Performance and inbreeding depression of selfed families. Forest Genetics 3: 69-79 (1996).
25. SOLLER, M. and GENIZI, A.: The efficiency of experimental designs for the detection of linkage between a marker locus and a locus affecting a quantitative trait in segregating populations. Biometrics 34: 47-55 (1978).
26. WELLER, J. I., KASHI, Y. and SOLLER, M.: Power of daughter and granddaughter designs for determining linkage between marker locus and quantitative trait loci in dairy cattle. Journal of Dairy Science 73: 2525-2537 (1990).
27. WILCOX, M. D.: Inbreeding depression and genetic variances estimated from self- and cross-pollinated families of Pinus radiata. Silvae Genetica 32: 89-96 (1983).
28. WILLIAMS, C. G. and NEALE, D. B.: Conifer wood quality and marker-assisted selection: A case study. Canadian Journal of Forest Research 22: 1009-1017 (1992).
29. WILLIAMS, C. G. and SAVOLAINEN, O.: Inbreeding depression in conifers: Implications for breeding. Forest Science 42: 102-117 (1996).
30. YADZANI, R., MUONA, O., RUDIN, D. and SZMIDT, A. E.: Genetic structure of a Pinus sylvestris L. seed tree stand and naturally regenerated under-story. Forest Science 31: 430-436 (1985).