Phylogeny and ecology of meristematic ascomycetes

Studies in Mycology

Volumn 1999, Issue 43, 1999, Pages 5-22

  Sterflinger, K ^a   De Hoog, G S ^b   Haase, G ^c  

^a UNIVERSITY OF OLDENBURG   (Germany)

^b CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^c UNIVERSITY HOSPITAL RWTH AACHEN   (Germany)

Author keywords

Black yeast; Ecotype; Extremotolerance; ITS; Meristematic fungi; Microcolonial fungi; Phylogeny; RFLP; Rock inhabiting fungi; Sequencing; SSU; Taxonomy

Indexed keywords

EID: 0033439436     PISSN: 01660616     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (55)

1. BÜDEL, B., BECKER, U., FOLLMANN, G. & STERFLINGER, K., 1998 - Algae, fungi and lichens. - In: Barthlott, W. & Porembski, S. (eds): Vegetation of Inselbergs: biotic diversity of a tropical ecosystem, (in print).
2. BUTIN, H., PEHL, L., HOOG, G.S. DE & WOLLENZIEN, U., 1995 - Trimmatostroma abietis sp. nov. (Hyphomycetes) and related species. - Antonie van Leeuwenhoek 69: 203-209.
3. COOKE, R.C. & WHIPPS, J.M., 1993 - Ecophysiology of fungi. -Blackwell Sci. Publ., London, 337 pp.
4. DANIN, A., 1992 - Pitting of calcareous rocks by organisms under terrestrial conditions. - Isr. J. Earth Sci. 41: 201-297.
5. DANIN, A., GERSON, R., MARTON, K. & GARTY, J., 1982 - Patterns of limestone and dolomite weathering by lichens and blue-green algae and their paleoclimatic significance. - Paleogeogr. Paleoclimatol. Paleoecol. 37: 221-233.
6. DE RIJK, P. & DE WACHTER, R., 1993 - DCSE, an interactive tool for sequence alignment and secondary structure research. - Comput. Appl. Biosci. 9: 735-740.
7. DIEDERICH, P., 1992 - New or interesting lichenicolous fungi 2. Taeniolella beschiana sp.nov. and Taeniolella serusiauxii sp. nov. (Hyphomycetes). - Bull. Soc. Nat. Luxemb. 93: 155-162.
8. EPPARD, M., KRUMBELN, W., KOCH, C., RHIEL, E., STALEY, J.T. & STACKEBRAND, E., 1996 - Morphological, physiological and molecular characterisation of actinomycete isolates from dry soil, rocks and monument surfaces. - Arch. Microbiol. 166: 12-22.
9. FELSENSTEIN, J., 1985 - Confidence limits on phylogenies: an approach using the bootstrap. - Evolution 39: 783-791.
10. FIGUERAS, M.J., HOOG, G.S. DE, TAKEO, K & GUARRO, J., 1996 - Stationary phase development of Trimmatostroma abietis. - Antonie van Leeuwenhoek 69: 217-222.
11. GÖTTLICH, E., HOOG, G.S. DE, YOSHIDA, S., TAKEO, K., NISHIMURA, K. & MIYAJI, M., 1995 - Cell-surface hydrophobicity and lipolysis as essential factors in human tinea nigra. - Mycoses 38: 489-494.
12. GORBUSHINA, A.A., PANINA, L.K., VLASOV, D.Y. & KRUMBEIN, W.E., 1996 - Fungi deteriorating marble in Chersonessus. - Mikol. Fitopatol. 30: 23-27.
13. GUÉHO, E., SMITH, M.T., HOOG, G.S. DE, BILLON-GRAND, G., CHRISTEN, R. & BATENBURG-VAN DER VEGTE, W.H., 1992 - Contributions to a revision of the genus Trichosporon. - Antonie van Leeuwenhoek 61: 289-316.
14. HAASE, G., SONNTAG, L., VAN DE PEER, Y., UIJTHOF, J.M.J., PODBIELSKI., A. & MELZER-KRICK, B., 1995 - Phylogenetic analysis of ten black yeast species using nuclear small subunit rRNA gene sequences. - Antonie van Leeuwenhoek 68: 9-33.
15. HAASE, G., SONNTAG, L., MELZER-KRICK, B. & HOOG, G.S. DE, 1999 -Phylogenetic inference by SSU gene analysis of members of the Herpotrichiellaceae with special reference to human pathogenic species. - Stud. Mycol. 43: 80-97.
16. HAWKSWORTH, D.L., 1979 - The lichenicolous Hyphomycetes. -Bull. Br. Mus., Nat. Hist., Bot. Ser. 6, 3: 183-300.
17. HENSSEN, A., 1987 - Lichenothelia, a genus of microfungi on rocks. - Bibl. Lichenol. 25: 257-293.
18. HOOG, G.S. DE & HERMANIDES-NIJHOF, E.J., 1977 - The black yeasts and allied hyphomycetes. - Stud. Mycol. 15: 1-222.
19. HOOG, G.S. DE & RUBIO, C., 1982 - A new dematiaceous fungus from human skin. - Sabouraudia 20: 15-20.
20. HOOG, G.S. DE & GUARRO, J. (eds), 1995 - Atlas of clinical fungi. -Centraalbureau voor Schimmelcultures / Universitat Rovira i Virgili, Baarn / Reus, 720 pp.
21. HOOG, G.S. DE, BEGUIN, H. & BATENBURG-VAN DE VEGTE, W.H., 1997 - Phaeotheca triangularis, a new meristematic black yeast from a humidifier. - Antonie van Leeuwenhoek 71: 289-295.
22. JACOBSON, E.S., HOVE, E. & EMERY, H.S., 1995 - Antioxidant function of melanin in black fungi. - Infect. Immun. 63: 4944-4945.
23. JUKES, T.H. & CANTOR, C.R., 1969 - Evolution of protein molecules. - Pp. 21-132. In: Munro, H.N. (ed.): Mammalian protein metabolism. - Academic, New York.
24. MASCLAUX, F., GUÉHO, E., HOOG, G.S. DE & CHRISTEN, R., 1995 -Phylogenetic relationships of human-pathogenic Cladosporium (Xylohypha) species inferred from partial LS rRNA sequences. - J. Med. Vet. Mycol. 33: 327-338.
25. MATSUMOTO, T., NISHIMOTO, K., KIMURA, K., PADHYE, A.A., AJELLO, L. & MCGINNIS, M.R., 1984 - Phaeohyphomycoses caused by Exophiala moniliae. - Sabouraudia 22: 17-26.
26. MCGINNIS, M.R., MCKENZIE, R.A. & CONNOLE, M.D., 1985 -Phaeosclera dematioides, a new etiologic agent of phaeohyphomycoses in cattle. - Sabouraudia 23: 133-135.
27. MENDOZA, L., KARUPPAYIL, S.M. & SZANISZLO, P.J., 1993 - Calcium regulates in vitro dimorphism in chromoblastomycotic fungi. -Mycoses 36: 157-164.
28. MINTER, D.W., 1987 - The significance of conidiogenesis in pleomorphy. - Pp. 8-11. In: Sugiyama, J. (ed.), Pleomorphic fungi: the diversity and its taxonomic implications. - Elsevier, Amsterdam.
29. NIENOW, J.A. & FRIEDMAN, E.I., 1993 - Terrestrial lithophytic (rock) communities. - Pp. 343-412. In: Friedman, E.I. (ed.): Antarctic microbiology.
30. OCAMPO-FRIEDMAN, R. & FRIEDMAN, E.I., 1993 - Biologically active substances produced by Antarctic cryptoendolithic fungi. -Antarct. J.U.S. 28: 252-254.
31. PALENCAROVA, E., JESENSKA, Z., PLANK, L., STRAKA, S., BASKA, T., HAJTMAN, A. & PEC, J., 1995 - Phaeohyphomycoses caused by Alternaria species and Phaeosclera dematioides Sigler, Tsuneda and Carmichael. - Clin. Exp. Derm. 20: 419-422.
32. PALINSKA, K.A., LIESACK, W., RHIEL, E. & KRUMBEIN, W.E., 1996 -Phenotype variability of identical genotypes: the need for a combined approach in cyanobacterial taxonomy demonstrated on Merismopedia-like isolates. - Arch. Mikrobiol. 166: 224-233.
33. RAO, V. & HOOG, G.S. DE, 1986 - New or critical hyphomycetes from India. - Stud. Mycol. 28: 1-84.
34. SAITOU, N. & NEI, M., 1987 - The neighbor-joining method: a new method for reconstructing phylogenetic trees. - Mol. Biol. Evol. 4: 406-425.
35. SIGLER, L., TSUNEDA, A. & CARMICHAEL, J.W., 1981 - Phaeotheca and Phaeosclera, two new genera of dematiaceous hyphomycetes and a redescription of Sarcinomyces Lindner. - Mycotaxon 12: 449-467.
36. SPATAFORA, J.W., MITCHELL, T.G. & VILGALYS, R., 1995 - Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens. - J. Clin. Microbiol. 33: 1322-1326.
37. STACKEBRANDT, E., LIESACK, W., WARD, N. & GOEBEL, B.M., 1993 -Genetic diversity of unculturable strains present in natural communities. - Pp. 567-572. In: Guerrero, R. & Pedrós-Alió, C. (eds): Trends in microbial ecology. - Spanish Soc. Microbiol.
38. STALEY, J.T., PALMER, F.E. & ADAMS, J.B., 1982 - Microcolonial common inhabitants on desert rocks? - Science 215: 1093-1095.
39. STERFLINGER, K., 1995 - Geomicrobiological investigations on the alteration of marble monuments by dematiaceous fungi (Sanctuary of Delos, Cyclades, Greece). - PhD Thesis, University of Oldenburg, 138 pp.
40. STERFLINGER, K., 1998 - Temperature and NaCl-tolerance of rock-inhabiting meristematic fungi. - Antonie van Leeuwenhoek 74: 271-281.
41. STERFLINGER, K., DE BAERE, R., HOOG, G.S. DE, DE WACHTER, R., KRUMBEIN, W.E. & HAASE, G., 1997 - Coniosporium perforans and C. apollinis, two new rock inhabiting fungi isolated from marble in the Sanctuary of Delos (Cyclades, Greece). - Antonie van Leeuwenhoek 72: 349-363.
42. STERFLINGER, K. & KRUMBEIN, W.E., 1995 - Multiple stress factors affecting growth of rock inhabiting black fungi. - Bot. Acta 108: 467-538.
43. STERFLINGER, K. & KRUMBEIN, W.E., 1997 - Dematiaceous fungi as a major agent for biopitting on Mediterranean marbles and limestones. - Geomicrobiol. J. 14: 219-230.
44. STERFLINGER, K. & SCHOLZ, J., 1997 - Bryozoan morphology and fungal infection. - Cour. Forsch.-Inst. Senckenb. 201: 433 -447.
45. TITZE, A. & HOOG, G.S. DE, 1990 - Capnobotryella renispora on roof tile. - Antonie van Leeuwenhoek 60: 35-42.
46. UIJTHOF, J.M.J., BELKUM, A. VAN, HOOG, G.S. DE & HAASE, G., 1998 -Exophiala dermatitidis and Sarcinomyces phaeomuriformis: ITS1-sequencing and nutritional physiology. - Med. Mycol. 36: 143-151.
47. UNTEREINER, W.A., GERRITS VAN DEN ENDE, A.H.G. & HOOG, G.S. DE, 1999 - Nutritional physiology of species of Capronia. - Stud. Mycol. 43: 96-104.
48. VAN DE PEER, Y. & DE WACHTER, R., 1994 - TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. -Comput. Appl. Biosci. 10: 569-570.
49. VAN DE PEER, Y., CAERS, A., DE RUK, P. & DE WACHTER, R., 1998 -Database on the structure of small ribosomal subunit RNA. -Nucleic Acids Res. 26: 179-182.
50. WHITE, T.J., BRUNS, T., LEE, S. & TAYLOR, J., 1990 - Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In. Innis, N., Gelfland, J. & White, T. (eds): PCR protocols: a guide to methods and applications. - Academic, New York.
51. WOLLENZIEN, U., HOOG, G.S. DE, KRUMBEIN, W.E. & URZÍ, C., 1995 -On the isolation of microcolonial fungi occurring on and in marble and other calcareous rocks. - Sci. Total Environm. 167: 287-294.
52. WOLLENZIEN, U., HOOG, G.S. DE, KRUMBEIN, W.E. & UIJTHOF, J.M.J., 1996 - Sarcinomyces petricola, a new microcolonial fungus from marble in the Mediterranean basin. - Antonie van Leeuwenhoek 71: 281-288.
53. YOSHIDA, S., TAKEO, K., HOOG, G.S. DE, NISHIMURA, K. & MIYAJI, M., 1996 - A new type of growth exhibited by Trimmatostroma abietis. - Antonie van Leeuwenhoek 69: 211-215.
54. ZALAR, P., HOOG, G.S. de & GUNDE-CIMERMAN, N., 1999 Ecology of halotolerant dothideaceous black yeasts. - Stud. Mycol. 43: 38-48.
55. ZEPPENFELDT, G., RICHARD-YEGRES, N., YEGRES, F. & HERNÁNDES, R., 1994 - Cladosporium carrionii: hongo dimórfico en cactáceas de la zona endémica para la cromomicosis en Venezuela. -Revta Iberoam. Micol. 11: 61-63.