A gene involved in quinate metabolism is specific to one DNA homology group of Xanthomonas campestris

Journal of Applied Microbiology

Volumn 87, Issue 5, 1999, Pages 649-658

  Lee, Y A ^a   Lo, Y C ^a   Yu, P P ^a  

^a FU JEN CATHOLIC UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; DNA; GENES; PHYSIOLOGY; PROBES;

'SPICE'; ACINETOBACTER CALCOACETICUS; AMINO ACID SEQUENCE; CODING REGION; DNA HOMOLOGY; GENOMIC DNA; METABOLIC ACTIVITY; NUCLEOTIDE SEQUENCING; RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; XANTHOMONAS CAMPESTRIS;

METABOLISM;

AMPICILLIN; ANTIBIOTIC AGENT; DNA; KANAMYCIN; NALIDIXIC ACID; RIFAMPICIN; SPECTINOMYCIN; STREPTOMYCIN; TETRACYCLINE;

ANTIBIOTIC RESISTANCE; ARTICLE; DNA SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; XANTHOMONAS; XANTHOMONAS CAMPESTRIS;

ACINETOBACTER CALCOACETICUS; NEGIBACTERIA; XANTHOMONAS; XANTHOMONAS CAMPESTRIS; XANTHOMONAS CAMPESTRIS PV. JUGLANDIS;

EID: 0033402969     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2672.1999.00864.x     Document Type: Article

References (44)

1. Alvarez, A.M., Benedict, A.A. and Mizumoto, C.Y. (1985) Identification of xanthomonads and grouping of strains of Xanthomonas campestris pv. campestris with monoclonal antibodies. Phytopathology 75, 722-728.
2. Bradbury, J.F. (1984) Genus II Xanthomonas Dowson, 1939. In Bergey's Manual of Systematic Bacteriology, Vol. 1. ed. Krieg, N. R. & Holt, J. G. pp. 199 210. Baltimore: Williams and Wilkins.
3. Collmer, A., Bauer, D.W., He, S.Y., Lindeberg, M., Kelemu, S., Rodriguez-Palenzuela, P., Burr, T.J. and Chatterjee, A.K. (1991) Pectic enzyme production and bacterial plant pathogenicity. In Advances in Molecular Genetics of Plant-Microbe Interactions, Vol. 1. ed. Hennecke, H. & Verma, D.P.S. pp. 65-72. Boston, MA: Kluwer Academic.
4. Cooksey, D.A. and Graham. J.H. (1989) Genomic fingerprinting of two pathovars of phytopathogenic bacteria by rare-cutting restriction enzymes and field inversion gel electrophoresis. Phytopathology 79, 745-750.
5. Daniels, M.J., Barber, C.E., Turner, D.C., Cleary, W.G. and Sawzyc, M.K. (1984) Isolation of mutants of Xanthomonas campestris pv. campestris showing altered pathogenicity. Journal of General Microbiology 130, 2447-2455.
6. Devereux, J., Haeberli, P. and Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12, 387-395.
7. Ditta, D.W., Stanfield, S., Corbih, D. and Helinski, D.R. (1980) Broad host range DNA cloning system for gram-negative bacteria; construction of a gene bank of Rhizobium melilota. Proceedings of the National Academy of Sciences USA 27, 7347-7351.
8. Elsemore, D.A. and Ornston, L.N. (1994) The pca-pob supraoperonic cluster of Acinetobacter calcoaceticus contains, quiA, the structural gene for quinate-shikimate dehydrogenase. Journal of Bacteriology 176, 7659-7666.
9. Elsemore, D.A. and Ornston, L.N. (1995) Unusual ancestry of dehydratases associated with quinate catabolism in Acinetobacter calcoaceticus. Journal of Bacteriology 177, 5971-5978.
10. Figurski, D.H. and Helinski, D.R. (1979) Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proceedings of the National Academy of Sciences USA 76, 1648-1652.
11. Gibertson, R.L., Maxwell, D.P., Hagedorn, D.J. and Leong, S.A. (1989) Development and application of a plasmid DNA probe for detection of bacteria causing common bacterial blight of bean. Phytopathology 79, 518-525.
12. Goto, M. and Starr, M.P. (1972) Phage-host relationships of Xanthomonas citri compared with those of other Xanthomonas. Annals of the Phytopathological Society of Japan 38, 226-248.
13. Hartung, J.S. and Civerolo, E.L. (1987) Genomic fingerprints of Xanthomonas campestris pv. citri strains from Asia, South America, and Florida. Phytopathology 77, 282-285.
14. Hawkins, A.R., Lamb, H.K., Moore, J.D., Charles, I.G. and Roberts, C.F. (1993) The pre-chorismate (shikimate) and quinate pathways in filamentous fungi, theoretical and practical aspects. Journal of General Microbiology 139, 2891-2899.
15. Hawley, D.K. and McClure, W.R. (1983) Compilation and analysis of Escherichia coli promoter sequences. Nucleic Acids Research 8, 2237-2255.
16. Hildebrand, D.C., Palleroni, N.J. and Schroth, M.N. (1990) Deoxyribonucleic acid relatedness of 24 xanthomonad strains representing 23 Xanthomonas campestris pathovars and Xanthomonas fragariae. Journal of Applied Bacteriology 68, 263-269.
17. Ingledew, W.M. and Tai. C.C. (1972) Quinate metabolism in Pseudomonas aeruginosa. Canadian Journal of Microbiology 18, 1817-1824.
18. Kemp, M.B. and Hegeman, G.D. (1968) Genetic control of the β-ketoadipate pathway in Pseudomonas aeruginosa. Journal of Bacteriology 103, 16-19.
19. Kyte, J. and Doolittle, R.F. (1982) A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology 157, 105-132.
20. Lazo, G.R. and Gabriel, D.W. (1987) Conservation of plasmid DNA sequences and pathovar identification of strains of Xanthomonas campestris. Phytopathology 77, 448-153.
21. Lazo, G.R., Roffey, R. and Gabriel, D.W. (1987) Pathovars of Xanthomonas campestris are distinguishable by restriction fragment-length polymorphism. International Journal of Systematic Bacteriology 37, 214-221.
22. Lee, Y.-A., Hendson, M.N., Panopoulos, J. and Schroth, M.N. (1994) Molecular cloning, chromosomal mapping, and sequence analysis of copper resistance genes from Xanthomonas campestris pv. juglandis, homology with small blue copper proteins and multicopper oxidase. Journal of Bacteriology 176, 173-188,.
23. Lee, Y.-A., Hildebrand, D.C. and Schroth, M.N. (1992) Use of quinate metabolism as phenotypic property to identify members of Xanthomonas campestris DNA homology group 6. Phytopathology 82, 971-973.
24. Lindgren, P.B., Frederick, R., Govindarajan, A.G., Panopoulos, N.J., Staskawicz, B.J. and Lindow, S.E. (1989) An ice nucleation reporter gene system, identification of inducible pathogenicity genes in Pseudomonas syringae pv. phaseolicola. European Molecular Biology Organization Journal 8, 2990-3001.
25. Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
26. Minsavage, G.V. and Schaad, N.W. (1983) Characterization of membrane proteins of Xanthomonas campestris pv. campestris. Phytopathology 73, 747-755.
27. Murata, N. and Starr, M.P. (1973) A concept of the genus Xanthomonas and its species in the light of segmental homology of deoxyribonucleic acids. Phytopathologische Zeitschrift 77, 285 323.
28. Palleroni, N.J. and Hildebrand. D.C. (1990) DNA similarity studies of Xanthomonas pathovars by hybridization using the SI nuclease methodology. In International Union of Microbiology Societies Congress, Osaka, Japan. Abstract PS77-01, p. 135.
29. Rahme, L.G., Mindrinos, M.N. and Panopoulos, N.J. (1991) Genetic and transcriptional organization of the hrp cluster of Pseudomonas syringae pv. phaseolicola. Journal of Bacteriology 173, 575-586.
30. Roy, M.A. (1988) Use of fatty acids for the identification of phytopathogenic bacteria. Plant Disease 72, 460.
31. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
32. Sanger, F., Nicklen, S. and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences USA 74, 5463-5467.
33. Sasser, M. (1985) Fatty acid analysis of the genus Xanthomonas. (Abstr.). In 1st Fallen Leaf Lake Conference on the Genus Xanthomonas. Fallen Leaf Lake, CA.
34. Stachel, S.E., An, G., Flores, C. and Nester, E.W. (1985) A Tn3 lacZ transposon for the random generation of b-galactosidase gene fusions, application to the analysis of gene expression in Agrobacterium. European Molecular Biology Organization Journal 4, 891-898.
35. Staskawiez., B.J., Dahlbeck, D., Keen, N. and Napoli, C. (1987) Molecular characterization of cloned avirulence genes from race 0 and race 1 of Pseudomonas syringae pv. glycinea. Journal of Bacteriology 169, 5789-5794.
36. Stead, D.E. (1989) Grouping of Xanthomonas campestris pathovars of cereals and grasses by fatty acid profiling. OEPP/EPPO Bulletin; European and Mediterranean Plant Protection Organization Bulletin 19, 57-68.
37. Thaveechai, N. and Schaad, N.W. (1984) Comparison of different immunogen preparations for serological identification of Xanthomonas campestris pv. campestris. Phytopathology 74, 1065-1070.
38. Tresguerres, M.E.F., Torrontegui, G.D. and Cánovas, J.L. (1970) The metabolism of quinate by Acinetobacter calcoacelicus. Archives of Microbiology 70, 110-118.
39. Van Kleef, M.A.G. and Duine, J.A. (1988) Bacterial NAD(P) independent quinate dehydrogenase is a quinoprotein. Archives of Microbiology 150, 32-36.
40. Vauterin, L., Hoste, B., Kersters, K. and Swings, J. (1995) Reclassification of Xanthomonas. International Journal of Systematic Bacteriology 45, 472-189.
41. Vauterin, L., Swings, J., Kersters, S., Gillis, M., Mew, T.W., Schroth, M.N., Palleroni, N.J., Hildebrand, D.C., Stead, D.E., Civerolo, E.L., Hayward, A.C., Maraite, H., Stall, R.E., Vidaver, A.K. and Bradbury, J.F. (1990) Towards an improved taxonomy of Xanthomonas. International Journal of Systematic Bacteriology 40, 312-316.
42. Von Heijne, G. (1986) A new method for predicting signal sequence cleavage signals. Nucleic Acids Research 11, 4683-4690.
43. Wayne, L.G., Brenner, D.J., Colwell, R.R., Grimont, P.A.D., Kandler, O., Krichevsky, M.I., Moore, L.M., Moore, W.E.C., Murray, R.G.E., Stackebrandt, E., Starr, M.P. and Truper, H.G. (1987) Report of the Ad Hoc committee on reconciliation of approaches to bacterial systematics. International Journal of Systematic Bacteriology 37, 463-464.
44. Wilson, K. (1987) Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, Vol. 1. ed. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. & Struhl, K. pp. 2.4.1-2.4.5. Cambridge, MA: John Wiley.