메뉴 건너뛰기




Volumn 17, Issue 1, 1999, Pages 1-9

Molecular scaffold-based design and comparison of combinatorial libraries focused on the ATP-binding site of protein kinases

Author keywords

Cluster analysis; Combinatorial chemistry; Computational docking; Molecular scaffolds; Protein kinase inhibitors; Target specific library design

Indexed keywords

ADENOSINE TRIPHOSPHATE; PROTEIN KINASE;

EID: 0033400589     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1093-3263(99)00015-7     Document Type: Article
Times cited : (31)

References (37)
  • 1
    • 0032087816 scopus 로고    scopus 로고
    • Computational methods in molecular diversity and combinatorial chemistry
    • Bures M.G., Martin Y.C. Computational methods in molecular diversity and combinatorial chemistry. Curr. Opin. Chem. Biol. 2:1998;376-380.
    • (1998) Curr. Opin. Chem. Biol. , vol.2 , pp. 376-380
    • Bures, M.G.1    Martin, Y.C.2
  • 2
    • 0032030723 scopus 로고    scopus 로고
    • Targeted molecular diversity in drug discovery: Integration of structure-based design and combinatorial chemistry
    • Li J., Murray C.W., Waszkowycz B., Young S.C. Targeted molecular diversity in drug discovery Integration of structure-based design and combinatorial chemistry . Drug Discov. Today. 3:1998;105-112.
    • (1998) Drug Discov. Today , vol.3 , pp. 105-112
    • Li, J.1    Murray, C.W.2    Waszkowycz, B.3    Young, S.C.4
  • 3
    • 0002716825 scopus 로고    scopus 로고
    • Combinatorial and computational approaches in structure-based drug design
    • Kubinyi H. Combinatorial and computational approaches in structure-based drug design. Curr. Opin. Drug Discov. Dev. 1:1998;16-27.
    • (1998) Curr. Opin. Drug Discov. Dev. , vol.1 , pp. 16-27
    • Kubinyi, H.1
  • 4
  • 6
    • 0000528756 scopus 로고    scopus 로고
    • The effectiveness of reactant pools for generating structurally-diverse combinatorial libraries
    • Gillet V.J., Willett P., Bradshaw J. The effectiveness of reactant pools for generating structurally-diverse combinatorial libraries. J. Chem. Inf. Comput. Sci. 37:1997;731-740.
    • (1997) J. Chem. Inf. Comput. Sci. , vol.37 , pp. 731-740
    • Gillet, V.J.1    Willett, P.2    Bradshaw, J.3
  • 7
    • 0027379219 scopus 로고
    • Orientational sampling and rigid-body minimization in molecular docking
    • Meng E.C., Gschwend D.A., Blaney J.M., Kuntz I.D. Orientational sampling and rigid-body minimization in molecular docking. Proteins. 17:1993;266-278.
    • (1993) Proteins , vol.17 , pp. 266-278
    • Meng, E.C.1    Gschwend, D.A.2    Blaney, J.M.3    Kuntz, I.D.4
  • 9
    • 16144364951 scopus 로고    scopus 로고
    • Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation
    • Yamaguchi H., Hendrickson W.A. Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation. Science. 384:1996;484-489.
    • (1996) Science , vol.384 , pp. 484-489
    • Yamaguchi, H.1    Hendrickson, W.A.2
  • 10
    • 0027408171 scopus 로고
    • Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MgATP and peptide inhibitor
    • Zheng J., Knighton D.R., Ten Eyck L.F., Karlsson R., Xuong N., Taylor S., Sowadski J.M. Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MgATP and peptide inhibitor. Biochemistry. 32:1993;2154-2161.
    • (1993) Biochemistry , vol.32 , pp. 2154-2161
    • Zheng, J.1    Knighton, D.R.2    Ten Eyck, L.F.3    Karlsson, R.4    Xuong, N.5    Taylor, S.6    Sowadski, J.M.7
  • 11
    • 84986467005 scopus 로고
    • Conformational analysis of flexible ligands in macromolecular receptor sites
    • Leach A.R., Kuntz I.D. Conformational analysis of flexible ligands in macromolecular receptor sites. J. Comput. Chem. 13:1992;730-748.
    • (1992) J. Comput. Chem. , vol.13 , pp. 730-748
    • Leach, A.R.1    Kuntz, I.D.2
  • 12
    • 84988053694 scopus 로고
    • An all atom force field for simulation of proteins and nucleic acids
    • Weiner S.J., Kollman P.A., Nguyen D.T., Case D.A. An all atom force field for simulation of proteins and nucleic acids. J. Comput. Chem. 7:1986;230-252.
    • (1986) J. Comput. Chem. , vol.7 , pp. 230-252
    • Weiner, S.J.1    Kollman, P.A.2    Nguyen, D.T.3    Case, D.A.4
  • 14
    • 0343079452 scopus 로고    scopus 로고
    • Irvine, California: Daylight Chemical Information Systems
    • Maybridge 97. 1997;Daylight Chemical Information Systems, Irvine, California.
    • (1997) Maybridge 97
  • 15
    • 0342645331 scopus 로고    scopus 로고
    • Chemical Computing Group, Inc., Montreal
    • MOE, Molecular Operating Environment. Chemical Computing Group, Inc., Montreal. http://www.chemcomp.com/fdept/prodinfo.htm.
    • MOE, Molecular Operating Environment
  • 16
    • 0002611896 scopus 로고    scopus 로고
    • Distribution of molecular scaffolds and R-groups isolated from large compound databases
    • Xue L., Bajorath J. Distribution of molecular scaffolds and R-groups isolated from large compound databases. J. Mol. Model. 5:1999;97-102.
    • (1999) J. Mol. Model. , vol.5 , pp. 97-102
    • Xue, L.1    Bajorath, J.2
  • 17
    • 0342645323 scopus 로고    scopus 로고
    • Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection
    • Brown R.D., Martin Y.C. Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection. J. Chem. Inf. Comput. Sci. 36:1996;572-584.
    • (1996) J. Chem. Inf. Comput. Sci. , vol.36 , pp. 572-584
    • Brown, R.D.1    Martin, Y.C.2
  • 19
    • 0343079450 scopus 로고    scopus 로고
    • MDL Information Systems. MDL Information Systems, Inc., San Leandro, California
    • MDL Information Systems. ISIS. MDL Information Systems, Inc., San Leandro, California.
    • ISIS
  • 21
    • 0027662829 scopus 로고
    • PATTY: A programmable atom typer and language for automatic classification of atoms in molecular databases
    • Bush B.L., Sheridan R.P. PATTY A programmable atom typer and language for automatic classification of atoms in molecular databases . J. Chem. Inf. Comput. Sci. 33:1993;756-762.
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , pp. 756-762
    • Bush, B.L.1    Sheridan, R.P.2
  • 23
    • 0001232509 scopus 로고    scopus 로고
    • On the properties of bit string-based measures of chemical similarity
    • Flower D.R. On the properties of bit string-based measures of chemical similarity. J. Chem. Inf. Comput. Sci. 38:1998;379-386.
    • (1998) J. Chem. Inf. Comput. Sci. , vol.38 , pp. 379-386
    • Flower, D.R.1
  • 24
    • 0023885305 scopus 로고
    • The protein kinase family: Conserved features and deduced phylogeny of the catalytic domains
    • Hanks S.K., Quinn A.M., Hunet T. The protein kinase family Conserved features and deduced phylogeny of the catalytic domains . Science. 241:1988;42-52.
    • (1988) Science , vol.241 , pp. 42-52
    • Hanks, S.K.1    Quinn, A.M.2    Hunet, T.3
  • 25
    • 0032201052 scopus 로고    scopus 로고
    • Signal transduction
    • Sandy J.R. Signal transduction. Br. J. Orthod. 25:1998;269-274.
    • (1998) Br. J. Orthod. , vol.25 , pp. 269-274
    • Sandy, J.R.1
  • 26
    • 0031277578 scopus 로고    scopus 로고
    • Small molecular inhibitors of the platelet-derived growth factor receptor, the fibroblast growth factor receptor, and Src family tyrosine kinases
    • Showalter H.D., Kraker A.J. Small molecular inhibitors of the platelet-derived growth factor receptor, the fibroblast growth factor receptor, and Src family tyrosine kinases. Pharmacol. Ther. 76:1997;55-71.
    • (1997) Pharmacol. Ther. , vol.76 , pp. 55-71
    • Showalter, H.D.1    Kraker, A.J.2
  • 27
    • 0028773477 scopus 로고
    • Three protein kinase structures define a common motif
    • Taylor S.S., Radzio-Andzelm E. Three protein kinase structures define a common motif. Structure. 2:1994;345-355.
    • (1994) Structure , vol.2 , pp. 345-355
    • Taylor, S.S.1    Radzio-Andzelm, E.2
  • 28
    • 0002233252 scopus 로고    scopus 로고
    • ATP site-directed kinase inhibitors
    • Denny W.A. ATP site-directed kinase inhibitors. IDrugs. 1:1998;10-12.
    • (1998) IDrugs , vol.1 , pp. 10-12
    • Denny, W.A.1
  • 30
    • 0032127543 scopus 로고    scopus 로고
    • Engineering protein kinases with distinct nucleotide specificities and inhibitor sensitivities by mutation of a single amino acid
    • Cohen P., Goedert M. Engineering protein kinases with distinct nucleotide specificities and inhibitor sensitivities by mutation of a single amino acid. Chem. Biol. 5:1998;R161-R164.
    • (1998) Chem. Biol. , vol.5
    • Cohen, P.1    Goedert, M.2
  • 33
    • 0026075305 scopus 로고
    • Use and specificity of genistein as inhibitor of protein-tyrosine kinase
    • Akiyama T., Ogawara H. Use and specificity of genistein as inhibitor of protein-tyrosine kinase. Methods Enzymol. 201:1991;362-370.
    • (1991) Methods Enzymol , vol.201 , pp. 362-370
    • Akiyama, T.1    Ogawara, H.2
  • 35
    • 0030945871 scopus 로고    scopus 로고
    • Structures of the tyrosine kinase domain of fibroblast growth factor receptor in complex with inhibitors
    • Mohammadi M., McMahon G., Sun L., Tang C., Hirth P., Yeh B.K., Hubbard S.R., Schlessinger J. Structures of the tyrosine kinase domain of fibroblast growth factor receptor in complex with inhibitors. Science. 276:1997;955-960.
    • (1997) Science , vol.276 , pp. 955-960
    • Mohammadi, M.1    McMahon, G.2    Sun, L.3    Tang, C.4    Hirth, P.5    Yeh, B.K.6    Hubbard, S.R.7    Schlessinger, J.8
  • 36
    • 0029090514 scopus 로고
    • Multiples modes of ligand recognition: Crystal structures of cyclin-dependent protein kinase 2 in complex with ATP and two inhibitors, olomoucine and isopentenyladenine
    • Schulze-Gahmen U., Brandsen J., Jones H.D., Morgan D.O., Meijer L., Vesely J., Kim S. Multiples modes of ligand recognition Crystal structures of cyclin-dependent protein kinase 2 in complex with ATP and two inhibitors, olomoucine and isopentenyladenine . Proteins. 22:1995;378-391.
    • (1995) Proteins , vol.22 , pp. 378-391
    • Schulze-Gahmen, U.1    Brandsen, J.2    Jones, H.D.3    Morgan, D.O.4    Meijer, L.5    Vesely, J.6    Kim, S.7
  • 37
    • 0029860018 scopus 로고    scopus 로고
    • Crystal structures of catalytic subunit of cAMP-dependent protein kinase in complex with isoquinolinesulfonyl protein kinase inhibitors H7, H8, and H89
    • Engh R., Girod A., Kinzel V., Huber R., Bossemeyer D. Crystal structures of catalytic subunit of cAMP-dependent protein kinase in complex with isoquinolinesulfonyl protein kinase inhibitors H7, H8, and H89. J. Biol. Chem. 271:(42):1996;26157-26164.
    • (1996) J. Biol. Chem. , vol.271 , Issue.42 , pp. 26157-26164
    • Engh, R.1    Girod, A.2    Kinzel, V.3    Huber, R.4    Bossemeyer, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.