Determination of sugar conformation in large RNA oligonucleotides from analysis of dipole-dipole cross correlated relaxation by solution NMR spectroscopy

Journal of Biomolecular NMR

Volumn 15, Issue 3, 1999, Pages 241-250

  Richter, Christian ^a   Griesinger, Christian ^a   Felli, Isabella ^a   Cole, Paul T ^b   Varani, Gabriele ^b   Schwalbe, Harald ^c  

^a GOETHE UNIVERSITY   (Germany)

^b Laboratory of Molecular Biology   (United Kingdom)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Anisotropic tumbling; Cross correlated relaxation; Isotope labelling; Ribose ring puckering; RNA

Indexed keywords

OLIGONUCLEOTIDE; RNA;

ARTICLE; ISOTOPE LABELING; MATHEMATICAL ANALYSIS; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; QUANTITATIVE DIAGNOSIS; RNA CONFORMATION; STRUCTURE ANALYSIS;

EID: 0033396293     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008319130714     Document Type: Article

References (33)

1. Altona, C. and Sundaralingam, M. (1972) J. Am. Chem. Soc., 94, 8205-8212.
2. Barbato, G., Ikura, M., Kay, L.E., Pastor, R.W. and Bax, A. (1992) Biochemistry, 31, 5269-5278.
3. Blommers, M.J.J., Stark, W., Jones, C.E., Head, D., Owen, C.E. and Jahnke, W. (1999) J. Am. Chem. Soc., 121, 1945-1953.
4. Brutscher, B., Skrynnikov, N.R., Bremi, T., Brüschweiler, R. and Ernst, R.R. (1998) J. Magn. Reson., 130, 346-351.
5. Carlomagno, T., Schwalbe, H., Rexroth, A., Sørensen, O.W. and Griesinger, C. (1998) J. Magn. Reson., 135, 216-226.
6. Carlomagno, T., Felli, I.C., Czech, M., Fischer, R., Sprinzl, M. and Griesinger, C. (1999) J. Am. Chem. Soc., 121, 1945-1948.
7. Conte, M.R., Bauer, C.J. and Lane, A.N. (1996) J. Biomol. NMR, 7, 190-206.
8. Felli, I.C., Richter, C., Griesinger, C. and Schwalbe, H. (1999) J. Am. Chem. Soc., 121, 1956-1957.
9. Glaser, S.J., Schwalbe, H., Marino, J.P. and Griesinger, C. (1996) J. Magn. Reson., B112, 160-180.
10. Griesinger, C., Sørensen, O.W. and Ernst, R.R. (1985) J. Am. Chem. Soc., 107, 6394-6396.
11. Griesinger, C., Sørensen, O.W. and Ernst, R.R. (1986) J. Chem. Phys., 85, 6837-6852.
12. Griesinger, C., Sørensen, O.W. and Ernst, R.R. (1987) J. Magn. Reson., 75, 474-492.
13. Griesinger, C., Hennig, M., Marino, J.P., Reif, B., Richter, C. and Schwalbe, H. (1999) Modern Methods in Protein NMR in Biological Magnetic Resonance Series, Vol. 16, Plenum, London, 288, 705-723.
14. Haasnoot, C.A.G., de Leeuw, F.A.A.M. and Altona, C. (1980) Tetrahedron, 36, 2783-2792.
15. Harbison, G.S. (1993) J. Am. Chem. Soc., 115, 3026-3027.
16. Hubbard, P.S. (1969) J. Chem. Phys., 51, 1647.
17. Kuboniwa, H., Tjandra, N., Grzesiek, S., Ren, H., Klee, C.B. and Bax, A. (1995) Nat. Struct. Biol., 2, 768-776.
18. Marino, J.P., Schwalbe, H., Glaser, S.J. and Griesinger, C. (1996) J. Am. Chem. Soc., 118, 7251-7258.
19. Norwood, T.J. (1993) J. Magn. Reson., 101, 109-112.
20. Pelupessy, P., Chiarparin, E., Ghose, R. and Bodenhausen, G. (1999) J. Biomol. NMR, 13, 375-380.
21. Reif, B., Hennig, M. and Griesinger, C. (1997) Science, 276, 1230-34.
22. Reif, B., Steinhagen, H., Junker, B., Reggelin, M. and Griesinger, C. (1998) Angew. Chem., 110, 2006-2009; Angew. Chem., Int. Ed. Engl., 37, 1903-1906.
23. Reif, B., Steinhagen, H., Junker, B., Reggelin, M. and Griesinger, C. (1998) Angew. Chem., 110, 2006-2009; Angew. Chem., Int. Ed. Engl., 37, 1903-1906.
24. Schmitz, U. and James, T.L. (1995) Methods Enzymol., 261, 3-44, and references cited therein.
25. Schneider, H. (1964) Z. Naturforsch. A, 19, 510.
26. Schwalbe, H., Marino, J.P., King, G.C., Wechselberger, R., Bermel, W. and Griesinger, C. (1994) J. Biomol. NMR, 4, 631-644.
27. Schwalbe, H., Marino, J.P., Glaser, S.J. and Griesinger, C. (1995) J. Am. Chem. Soc., 117, 7251-7252.
28. Tjandra, N., Kuboniwa, H., Ren, H. and Bax, A. (1995) Eur. J. Biochem., 230, 1014-1024.
29. Varani, L., Hasedawa, M., Spillantini, M.G., Smith, M.J., Murrell, J.R., Ghetti, B., Klug, A., Goedert, M. and Varani, G. (1999) Proc. Natl. Acad. Sci. USA, 96, 8229-8234.
30. Yang, D., Konrat, R. and Kay, L.E. (1997) J. Am. Chem. Soc., 119, 11938-11940.
31. Yang, D., Mittermaier, A., Mok, Y.-K. and Kay, L.E. (1998) J. Mol. Biol., 276, 939-954.
32. Yang, D., Mok, Y.-K., Muhandiram, D.R., Forman-Kay, J.D. and Kay, L.E. (1999) J. Am. Chem. Soc., 121, 3555-3556.
33. Zimmer, D., Marino, J.P. and Griesinger, C. (1996) Magn. Reson. Chem., 34, 177-186.