Symbolic Cantor Algorithm (SCA): A method for analysis of gene and protein coding

Periodicum Biologorum

Volumn 101, Issue 4, 1999, Pages 355-361

  Štambuk, Nikola ^a  

^a RUDER BO KOVI INSTITUTE   (Croatia)

Author keywords

Binary; DNA; Gray code; Horseshoe map; Molecular recognition theory; Peptide; RNA; SCA

Indexed keywords

AMINO ACID; DNA; LIGAND; NUCLEOTIDE; OXOACID; PROTEIN; PURINE; PYRIMIDINE; TRANSFER RNA;

ALGORITHM; AMINO ACID SEQUENCE; ANTICODON; ARTICLE; CODON; DYNAMICS; GENETIC CODE; HYDROGEN BOND; MOLECULAR RECOGNITION; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; RNA TRANSCRIPTION;

EID: 0033394775     PISSN: 00315362     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (18)

1. BARANYI L, CAMPBELL W, OHSHIMA K, FUJIMOTO S, BOROS M, OKADA H 1995 The antisense homology box: a new motif within proteins that encodes biologically active peptides. Nature Medicine 1: 894-901
2. BAJPAI A, HOOPER K P, EBNER K E 1991 Interactions of antisense peptides with ovine prolactin. Biochem Biophys Res Commun 180: 1312-1317
3. BLALOCK J E, BOST K L 1986 Binding of peptides that are specified by complementary RNAs. Biochem J 234: 679-683
4. BLALOCK J E 1995 Genetic origin of protein shape and interaction rules. Nature Medicine 1: 876-878
5. BOST K J, SMITH E M, BLALOCK J E 1985 Regions of complementarity between the messenger RNAs for epidermal growth factor, transferrin, interleukin-2 and their respective receptors. Biochem Biophys Res Commun 128: 1373-1380
6. CRICK F H C 1968 The origin of the genetic code. J Mol Biol 38: 367-379
7. GARDNER M 1972 Mathematical games. Sci American 227(2): 106-109
8. GARTNER T K, LAUDON R, TAYLOR D B 1991 The peptides APLHK, EHIPA and GAPL are hydropathically equivalent peptide mimics of a fibrinogen binding domain of glycoprotein IIb/IIIa. Biochem Biophys Res Commun 180: 1446-1452
9. HOLMGREN R A 1996 A first course in discrete dynamical systems. Springer-Verlag, New York, p 69-126
10. LACKIE J M, DOWJ A T (eds) 1995 The Dictionary of Cell Biology. Academic Press, London, p 17-18, 79
11. MORE G J, GANTER C, FRANKLIN K J 1989 Angiotensin žantipeptides': (-)messenger RNA complementary to human angiotensin II (+)messenger RNA encodes an angiotensin receptor antagonist. Biochem Biophys Res Commun 160: 1387-1391
12. RODIN S, RODIN A, OHNO S 1996 The presence of codon-anticodon pairs in the acceptor stem of tRNAs. Proc Natl Acad Sci USA 93: 4537-4542
13. SOFFER RL, BANDYOPADHYAY B, ROSENBERG E, HOEPRICH P, TEITELBAUM A, BRUNCK T, COLBY C B, GLOFF C G 1987 Unexpected binding of an octapeptide to the angiotensin II receptor. Proc Natl Acad Sci USA 84: 9219-9222
14. SWANSON R 1984 A unifying concept of the amino acid code. Bull Math Biol 46: 187-203
15. ŠTAMBUK N 1998 On the genetic origin of complementary protein coding. Croat Chem Acta 71: 573-589.
16. ŠTAMBUK N 1999 On circular coding properties of gene and protein sequences. Croat Chem Acta 72: 999-1008
17. TUFILLARO N B, ABBOTT T, REILLY J 1992 An Experimental Approach to Nonlinear Dynamics and Chaos. Addison-Wesley, Redwood City, p 96-231
18. WEIGENT D A, HOEPRICH P D, BOST K L, BRUNCK T K, REIHER III W E, BLALOCK J E 1986 The HTLV-III envelope protein contains a hexapeptide homologous to a region of interleukin-2 that binds to the interleukin-2 receptor. Biochem Biophys Res Commun 139: 367-374