Xylose utilisation: Cloning and characterisation of the xylitol dehydrogenase from Galactocandida mastotermitis

Biological Chemistry

Volumn 380, Issue 12, 1999, Pages 1405-1411

  Habenicht, Andreas ^a   Motejadded, Hassan ^a   Kiess, Michael ^b   Wegerer, Angelika ^a   Mattes, Ralf ^a  

^a UNIVERSITY OF STUTTGART   (Germany)

^b HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

Evolution; Expression; Fungi; Regulation; Xylose metabolism; Yeasts

Indexed keywords

ALCOHOL DEHYDROGENASE; AMINO ACID; PHOSPHATE; PROTEIN; TRANSALDOLASE; TRANSKETOLASE; XYLITOL; XYLOSE; XYLULOSE; ZINC;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CONTROLLED STUDY; DATA BASE; ESCHERICHIA COLI; GALACTOCANDIDA MASTOTERMITIS; GENE EXPRESSION; GENE LIBRARY; INTRON; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PENTOSE PHOSPHATE CYCLE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; TEMPERATURE; YEAST;

CANDIDA SP. HA167; ESCHERICHIA COLI; FUNGI; GALACTOCANDIDA; GALACTOCANDIDA MASTOTERMITIS; MYXOGASTRIA; SACCHAROMYCES CEREVISIAE;

EID: 0033394642     PISSN: 14316730     EISSN: None     Source Type: Journal    
DOI: 10.1515/BC.1999.180     Document Type: Article

References (37)

1. Aspinall, G.O. (1980). Chemistry of cell wall polysaccharides. In: The Biochemistry of Plants. J. Preiss, P.K. Stumpf, and E.E. Conn, eds. (New York: Academic Press Inc.), pp. 473-499.
2. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (1989). Current Protocols in Molecular Biology (New York: Greene Publishing Associates and Wiley-Intersciences).
3. Barnett, J.A. (1976). The utilisation of sugars in yeasts. In: Advances in carbohydrate chemistry and biochemistry, R.S. Tipson and D. Horton, eds. (New York: Academic Press Inc.), pp. 125-235.
4. Berghammer, H., and Auer, B. (1993). "Easypreps": Fast and easy plasmid mini preparation for analysis of recombinant clones in E. coli. Biotechniques 14, 528.
5. Bradford, M.M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilising the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
6. Brinkmann, U., Mattes, R.E., and Buckel, P. (1989). High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product. Gene 85, 109-114.
7. Bu, Y., and Schmidt, M.C. (1998). Identification of c/s-acting elements in the SUC2 promoter of Saccharomyces cerevisiae required for activation of transcription. Nucl. Acids Res. 26, 1002-1009.
8. Habenicht, A. (1997). The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase: Biochemistry, structure, occurrence and evolution. Biol. Chem. 378, 1413-1419.
9. Hacker, B., Habenicht, A., Kiess, M., and Mattes, R. (1999). Xylose utilisation: cloning and characterisation of the Xylose reductase from Candida tenuis. Biol. Chem. 380, 1395-1403.
10. Haymerle, H., Herz, J., Bressan, G.M., Frank, R., and Stanley, K.K. (1986). Efficient construction of cDNA libraries in plasmid expression vectors using an adapter strategy. Nucl. Acids Res. 14, 8615-8624.
11. Ho, N.W.Y., Lin, F.P., Huang, S., Andrews, P.C., and Tsao, G.T. (1990). Purification, characterisation, and amino terminal sequence of xylose reductase from Candida shehatae. Enzyme Microb. Technol. 12, 33-39.
12. Jez, J.M., Bennet, M.J., Schlegel, B.P., Lewis, M., and Penning, T.M. (1997). Comparative anatomy of the aldo-keto reductase superfamily. Biochem. J. 326, 625-636.
13. Kern, M., Haltrich, D., Nidetzky, B., and Kulbe, K.D. (1997). Induction of aldose reductase and xylitol dehydrogenase activities in Candida tenuis CBS 4435. FEMS Microbiol. Lett. 149, 31-37.
14. Liu, Z.J., Sun, Y.J., Rose, J., Chung, Y.J., Hsiao, C.D., Chang, W.R., Kuo, I., Perozich, J., Lindahl, R., Hempel, J., and Wang B.C. (1997). The first structure of an aldehyde dehydrogenase reveals novel interactions between NAD and the Rossmann fold. Nat. Struct. Biol. 4, 317-326.
15. Lundin, M., Neilin J.O., and Ronne, H. (1994). Importance of a flanking AT-rich region in target site recognition by the GC Box-binding zinc finger protein MIG1. Molec. Cell. Biol. 14, 1979-1985.
16. Lunzer, R., Mamnun, Y, Haltrich, D., Kulbe, K.D., and Nidetzky, B. (1998). Structural and functional properties of ayeast xylitol dehydrogenase, a zinc- and magnesium containing metalloenzyme similar to medium-chain sorbitol dehydrogenases. Biochem. J. 336, 91-99.
17. Neirinck, L.G., Maleszka, R., and Schneider, H. (1984). The requirement of oxygen for incorporation of carbon from D-xylose and D-glucose by Pachysolen tannophilus. Arch. Biochem. Biophys. 228, 13-21.
18. Neuhauser, W., Haltrich, D., Kulbe, K.D., and Nidetzky, B. (1997). NAD(P)D-dependent aldose reductase from xylose-assimilating yeast Candida tenuis. Biochem. J. 326, 683-692.
19. Neuhauser, W., Haltrich, D., Kulbe, K.D., and Nidetzky, B. (1998). Noncovalent enzyme-substrate interactions in the catalytic mechanism of yeast aldose reductase. Biochemistry 37, 1116-1123.
20. Nidetzky, B., Neuhauser, W., Haltrich, D., and Kulbe, K.D. (1996). Continuous enzymatic production of xylitol with simultaneous coenzyme regeneration in a charged membrane reactor. Biotechnol. Bioengin. 52, 387-396.
21. Panchal C.J., Bast L., Russel I., and Stewart G.G. (1988). Repression of xylose utilisation by glucose in xylose fermenting yeasts. Can. J. Microbiol. 34, 1316-1320.
22. Persson, B., Halborn, J., Alfridsson, M., Hahn-Hägerdal, B., Keränen, S., Penttilä, M., and Jörnvall, H. (1993). Dual relationship of xylitol and alcohol dehydrogenases in families of two protein types. FEBS Letters 324, 9-14.
23. Persson, B., Zigler, J.S., and Jörnvall, H. (1994). A super-family of medium-chain dehydrogenases / reductases (MDR). Eur. J. Biochem. 226, 15-22.
24. Quandt, K., Frech, K., Karas, H., Wingender, E., and Werner, T. (1995). MatInd and MatInspector - New fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucl. Acids Res. 23, 4878-4884.
25. Rossman, M.G., Liljas, A., Bränden, C.-I., and Banaszak, L.J. (1975). Evolutionary and structural relationships among dehydrogenases. In: The Enzymes, 3rd Edition, Vol. 11, P.D. Boyer, ed. (New York: Academic Press), pp 62-102.
26. Saitou, N., and Nei, M. (1987). The neighbour-joining method: A new method for constructing phylogenetic trees. Mol. Biol. Evol. 4, 406-625.
27. Sambrook, J., Frisch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual (Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press).
28. Stanley, K.K., and Luzio, J.P. (1984). Construction of a new family of high efficiency bacterial expression vectors: identification of cDNA clones coding for human liver proteins. EMBO J. 3, 1429-1434.
29. Stone, K.L., and Williams, K.R. (1993). Enzymatic digestion of proteins and HPLC peptide isolation. In: A practical guide to protein and peptide purification for microsequencing, P. Matsudaira, ed. (San Diego, USA: Academic Press Inc.) pp. 45-69.
30. Strimmer, K. (1997). Maximum likelihood methods in molecular phylogenetics (München, Germany: Herbert Utz Verlag).
31. Sun, H.-W., and Plapp, B.V. (1992). Progressive sequence alignment and molecular evolution of the Zn-containing alcohol dehydrogenasefamily. J. Mol. Evol. 34, 522-535.
32. Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position specific gap penalties and weight matrix choice. Nucl. Acids Res. 22, 4673-4680.
33. Toivola, A., Yarrow, D., Van den Bosch, E., Van Dijken, J.P., and Scheffers, W.A. (1984). Alcoholic fermentation of D-xylose by yeasts. Appl. Environ. Microbiol. 47, 1221-1223.
34. Verduyn, C., Van Kleef, R., Frank, J., Schreuder, H., Van Dijken, J.P., and Schefers, W.A. (1985). Properties of the NAD(P)H-dependent xylose reductase from the xylose-fermenting yeast Pichiastipitis. Biochem. J. 226, 669-677.
35. Wierenga, R.K., Terpstra, P., and Hol, W.G.J. (1986). Prediction of the occurrence of the ADP-binding bab-fold in proteins, using an amino acid sequence fingerprint, J. Mol. Biol. 187, 101-107.
36. Yokoyama, S.-I., Kinoshita, Y., Suzuki, T., Kawai, K., Horitsu, H., and Takamizawa, K. (1995). Cloning and sequencing of two D-xylose reductase genes (xyrA and xyrB) from Candida tropicalis. J. Ferment. Bioengin. 80, 603-605.
37. Zaret, K.S., and Sherman, F. (1982). DNA sequence required for efficient transcription termination in yeast. Cell 28, 563-573.