Refined solution structure and backbone dynamics of 15N-labeled C12A- p8(MTCP1) studied by NMR relaxation

Journal of Biomolecular NMR

Volumn 15, Issue 4, 1999, Pages 271-288

  Barthe, Philippe ^a   Chiche, Laurent ^a   Declerck, Nathalie ^a   Delsuc, Marc André ^a   Lefèvre, Jean François ^b   Malliavin, Thérèse ^a   Mispelter, Joel ^c   Stern, Marc Henri ^d   Lhoste, Jean Marc ^a   Roumestand, Christian ^a  

^a CNRS   (France)

^b UNIVERSITÉ DE STRASBOURG   (France)

^c INSERM   (France)

^d SAINT LOUIS HOSPITAL   (France)

Author keywords

Leukemia; NMR structure; Protein dynamics; Translocations

Indexed keywords

T LYMPHOCYTE RECEPTOR;

ARTICLE; CHROMOSOME TRANSLOCATION; GENE STRUCTURE; IMAGE ANALYSIS; LEUKEMIA; LYMPHOCYTE PROLIFERATION; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN STRUCTURE; THREE DIMENSIONAL IMAGING;

DIFFUSION; DNA-BINDING PROTEINS; HUMANS; LEUKEMIA; MATHEMATICAL COMPUTING; MODELS, MOLECULAR; MOTION; MUTATION, MISSENSE; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; ONCOGENE PROTEINS; PROTEIN STRUCTURE, SECONDARY; SOLUTIONS; TRANSCRIPTION FACTORS;

EID: 0033389470     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008336418418     Document Type: Article

References (76)

1. Abragam, A. (1961) Principles of Nuclear Magnetism, Oxford Science Publication, Clarendon Press, Oxford.
2. Bai, Y., Milne, J.S., Mayne, L. and Englander, S.W. (1993) Proteins Struct. Funct. Genet., 17, 75-86.
3. Barthe, P., Yang, Y.-S., Chiche, L., Hoh, F., Strub, M.P., Guignard, L., Soulier, J., Stern, M.H., van Tilbeurgh, H., Lhoste, J.M. and Roumestand, C. (1997) J. Mol. Biol., 274, 801-815.
4. Bax, A., Ikura, M., Kay, L.E., Torchia, D.A. and Tschudin, R. (1990) J. Magn. Reson., 86, 304-318.
5. Bax, A., Ikura, M., Kay, L.E. and Zhu, G. (1991) J. Magn. Reson., 91, 174-178.
6. Bax, A. and Pochapsky, S.S. (1992) J. Magn. Reson., 99, 638-643.
7. Billeter, M., Neri, D., Otting, G., Qian, Y.-Q. and Wüthrich, K. (1992) J. Biomol. NMR, 2, 257-274.
8. Bodenhausen, G. and Ruben, D.J. (1980) Chem. Phys. Lett., 69, 185-189.
9. Bradley, E.K., Thomason, J.F., Cohen, F.E., Kosen, P.A. and Kuntz, I.D. (1990) J. Mol. Biol., 215, 607-622.
10. Braunschweiler, L. and Ernst, R.R. (1983) J. Magn. Reson., 53, 521-528.
11. Brooks III, C.L., Karplus, M. and Pettitt, B.M. (1987) Proteins: A Theoretical Perspective of Dynamics, Structure, and Thermodynamics, John Wiley and Sons, New York, NY, pp. 1-259.
12. Carr, H.Y and Purcell, E.M. (1954) Phys. Rev., 94, 630-632.
13. Cornell, W.D., Cieplak, P., Bayly, C.I., Gould, I.R., Merz, K.M. Jr, Ferguson, D.M., Spellmeyer, D.C., Fox, T., Caldwell, J.W. and Kollman, RA. (1995) J. Am. Chem. Soc., 117, 5179-5197.
14. Dallapiccola, B., Alimena, G., Chessa, L., Gastaldi, R., De Rossi, G., Semenzato, G., Quinti, I. and Pandolfi, F. (1984) Int. J. Cancer, 34, 171-176.
15. Davis, D.G. and Bax, A. (1985) J. Am. Chem. Soc., 107, 2820-2821.
16. Dayie, K.T., Wagner, G. and Lefèvre, J.F. (1996) Annu. Rev. Phys. Chem., 47, 243-282.
17. Delsuc, M.A. and Malliavin, T. (1998) Anal. Chem., 70, 2146-2148.
18. Englander, S.W. and Kallenbach, N.R. (1983) Quart. Rev. Biophys., 16, 521-655.
19. Farrow, N.A., Zhang, O., Szabo, A., Torchia, D.A. and Kay, L.E. (1995) J. Biomol. NMR, 6, 153-162.
20. Fisch, P., Forster, A., Sherrington, P.D., Dyer, M.J. and Rabbitts, T.H. (1993) Oncogene, 8, 3271-3276.
21. Frenkiel, T., Bauer, C., Carr, M.D., Birdsall, B. and Feeney, J. (1990) J. Magn. Reson., 90, 420-425.
22. Fu, T.-B., Virgilio, L., Narducci, M.G., Facchiano, A., Russo, G. and Croce C.M. (1994) Cancer Res., 54, 6297-6301.
23. Fushman, D., Cahill, S. and Cowburn, D. (1997) J. Mol. Biol., 266, 173-194.
24. Gibbs, S.J. and Johnson, C.S. (1991) J. Magn. Reson., 93, 395-402.
25. Goyns, M.H., Hammond, D.W., Harrison, C.J., Menasce, L.P., Ross, F.M. and Hancock, B.W. (1993) Leukemia, 7, 848-852.
26. Grzesiek, S. and Bax, A. (1993) J. Am. Chem. Soc., 115, 12593-12594.
27. Güntert, P. and Wüthrich, K. (1991) J. Biomol. NMR, 1, 447-456.
28. Güntert, P., Mumenthaler, C. and Wüthrich, K. (1997) J. Mol. Biol., 273, 283-298.
29. Hiyama, Y., Niu, C.H., Silverton, J.V., Bavoso, A. and Torchia, D.A. (1988) J. Am. Chem. Soc., 110, 2378-2383.
30. Hvidt, A. and Nielsen, S.O. (1966) Adv. Protein Chem., 21, 287-386.
31. Hyberts, S.G., Märki, W. and Wagner, G. (1987) Eur. J. Biochem., 164, 625-635.
32. Ikura, M., Bax, A., Clore, M. and Gronenborn, A. (1990) J. Am. Chem. Soc., 112, 9020-9022.
33. Ishima, R. and Nagayama, K. (1995a) Biochemistry, 34, 3162-3171.
34. Ishima, R. and Nagayama, K. (1995b) J. Magn. Reson., B108, 73-76.
35. Jeener, J., Meier, B.H., Bachman, P. and Ernst, R.R. (1979) J. Chem. Phys., 71, 4546-4553.
36. Kadkhodaei, M., Hwang, T.-L., Tang, J. and Shaka, A.J. (1993) J. Magn. Reson., A105, 104-107.
37. Karplus, M. (1963) J. Am. Chem. Soc., 85, 2870-2871.
38. Kay, L.E., Torchia, D.A. and Bax, A. (1989) Biochemistry, 28, 8972-8979.
39. Kay, L.E., Nicholson, L.K., Delaglio, F., Bax, A. and Torchia, D.A. (1992) J. Magn. Reson., 97, 359-375.
40. Kessler, H., Griesinger, C., Lautz, J., Muller, A., van Gunsteren, W.F. and Berendsen, H.J.C. (1988) J. Am. Chem. Soc., 110, 3393-3396.
41. Kumar, A., Ernst, R.R. and Wüthrich, K. (1980) Biochem. Biophys. Res. Commun., 95, 1-6.
42. Lefèvre, J.-F., Dayie, K.T., Peng, J.W. and Wagner, G. (1996) Biochemistry, 35, 2674-2686.
43. Madani, A., Soulier, J., Schmid, M., Plichtova, R., Lermé, F., Gateau-Roesch, O., Garnier, J.P., Pla, M., Sigaux, F. and Stern, M.-H. (1995) Oncogene, 10, 2259-2262.
44. Madani, A., Choukroun, V., Soulier, J., Cacheux, V., Claisse, J.F., Valensi, F., Daliphard, S., Cazin, B., Levy, V., Leblond, V., Daniel, M.T., Sigaux, F. and Stern, M.H. (1996) Blood, 87, 1923-1927.
45. Marion, D., Driscoll, P.C., Kay, L.E., Wingfield, P.T., Bax, A., Gronenborn, A.M. and Clore, G.M. (1989a) Biochemistry, 28, 6150-6156.
46. Marion, D., Ikura, M., Tschudin, R. and Bax, A. (1989b) J. Magn. Reson., 85, 393-399.
47. Markus, M.A., Dayie, K.T., Matsudaira, P. and Wagner, G. (1996) Biochemistry, 35, 1722-1732.
48. Meiboom, S. and Gill, D. (1958) Rev. Sci. Instrum., 29, 688-691.
49. Neri, D., Otting, G. and Wüthrich, K. (1990) J. Am. Chem. Soc., 112, 3663-3665.
50. Pardi, A., Billeter, M. and Wüthrich, K. (1984) J. Mol. Biol., 180, 741-751.
51. Pearlman, D.A., Case, D.A., Caldwell, J.W., Ross, W.S., Cheatham III, T.E., Fergusson, D.M., Seibel, G.L., Chandra Singh, U., Weiner, P.K. and Kollman, P.A. (1995) AMBER 4.1, University of California, San Francisco, CA.
52. Pedersen, T.G., Sigurskjold, B.W., Andersen, K.V., Kjær, M., Poulsen, F.M., Dobson, C.M. and Redfield, C. (1991) J. Mol. Biol., 218, 413-426.
53. Pedersen, T.G., Thomsen, N.K., Andersen, K.V., Madsen, J.C. and Poulsen, F.M. (1993) J. Mol. Biol., 230, 651-660.
54. Peng, J.W. and Wagner, G. (1992a) Biochemistry, 31, 8571-8586.
55. Peng, J.W. and Wagner, G. (1992b) J. Magn. Reson., 98, 308-332.
56. Piotto, M., Saudek, V. and Sklenar, V. (1992) J. Biomol. NMR, 2, 661-665.
57. Pons, J.L., Malliavin, T.E. and Delsuc, M.A. (1996) J. Biomol. NMR, 8, 445-452.
58. Press, W.H., Flannery, B.P., Teukolsky, S.A. and Vetterling, W.T. (1986) Numerical Recipes, Cambridge University Press, Cambridge.
59. Ramachandran, G.N., Chandrasekharan, R. and Kopple, K.D. (1971) Biopolymers, 10, 2113-2131.
60. Rance, M., Sørensen, O.W., Bodenhausen, G., Wagner, G., Ernst, R.R. and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun., 117, 479-495.
61. Rance, M. (1987) J. Magn. Reson., 74, 557-564.
62. Santoro, J., Bruix, M. and Rico, M., Thirteenth European Experimental NMR Conference, May 19-24, 1996, Paris.
63. Shaka, A.J., Keeler, J. and Freeman, R. (1983) J. Magn. Reson., 53, 313-340.
64. Skelton, N.J., Palmer, A.G., III, Akke, M., Kördel, J., Rance, M. and Chazin, W.J. (1993) J. Magn. Reson., B102, 253-264.
65. Sklenar, V. (1995) J. Magn. Reson., A114, 132-135.
66. Soulier, J., Madani, A., Cacheux, V., Rosenzwajg, M., Sigaux, F. and Stern, M.-H. (1994) Oncogene, 9, 3565-3570.
67. Stern, M.H., Soulier, J., Rosenzwajg, M., Nakahara, K., Canki-Klain, N., Aurias, A., Sigaux, F. and Kirsch, I.R. (1993) Oncogene, 8, 2475-2483.
68. Szyperski, T., Luginbühl, P., Otting, G., Güntert, P. and Wüthrich, K. (1993) J. Biomol. NMR, 3, 151-164.
69. Tjandra, N., Feller, S.E., Pastor, R.W. and Bax, A. (1995) J. Am. Chem. Soc., 117, 12562-12566.
70. van Heijenoort, C., Penin, F. and Guittet, E. (1998) Biochemistry, 37, 5060-5073.
71. Wagner, G., Braun, W., Havel, T.F., Schaumann, T., Go, N. and Wüthrich, K. (1987) J. Mol. Biol., 196, 611-639.
72. Wider, G., Dötsch, V. and Wüthrich, K. (1994) J. Magn. Reson., A108, 255-258.
73. Witzig, T.E., Phyliky, R.L., Li, C.-Y., Homburger, H.A., Dewald, G.W. and Handwerger, B.S. (1986) Am. J. Hematol., 21, 139-155.
74. Wu, D., Chen, A. and Johnson Jr., C.S. (1995) J. Magn. Reson., A115, 260-264.
75. Wüthrich, K., Billeter, M. and Braun, W. (1983) J. Mol. Biol., 169, 949-961.
76. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley-Interscience, New York, NY.