D(GCGTAGC), an equilibrium between a hairpin structure and an unusual duplex

Nucleosides and Nucleotides

Volumn 18, Issue 11-12, 1999, Pages 2721-2744

  Lescrinier, Eveline ^a   Sheng, Shuqun ^b   Schraml, Jan ^c   Busson, Roger ^a   Herdewijn, Piet ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b GEORGIA STATE UNIVERSITY   (United States)

^c INSTITUTE OF CHEMICAL PROCESS FUNDAMENTALS   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

AQUEOUS SOLUTION; ARTICLE; DNA STRUCTURE; EQUILIBRIUM CONSTANT; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEAR OVERHAUSER EFFECT; NUCLEOTIDE SEQUENCE; THERMOSTABILITY;

EID: 0033378343     PISSN: 07328311     EISSN: None     Source Type: Journal    
DOI: 10.1080/07328319908044637     Document Type: Article

References (34)

1. Yoshizawa, S.; Kawai, G.; Watanabe, K.; Miura, K. Hirao, I.; Biochemistry, 1997 36, 4761-4767.
2. Chou, S.-H.; Zhu, L.; Reid, B. R. I. 1996 259, 445-457.
3. Varani, G. Ann. Rev. Biophys. Biomol. Struct., 1995 24, 379-404.
4. Hirao, I.; Nishimura, Y.; Naraoka, T.; Watanabe, K.; Arata, Y.; Miura, K. Nucl. Acids Res., 1989 17, 2223-2231.
5. Hilbers, C. W.; Blommers, M. J. J.; van de Ven, F. J. M.; van Boom, J. H.; van der Marel, G. A. Nucleosides Nucleotides, 1991 10, 61-80.
6. Tuerk, C.; Gauss, P.; Thermes, C.; Groebe, D. R.; Gayle, M.; Guild, N.; Stormo, G.; D'Aubenton-Carafa, Y.; Uhlenbeck, O. C.; Tinoco, I.; Brody, E. N.; Gold, L. Proc. Natl. Acad. Sci., 1988 85, 1364-1368.
7. Heus, H.; Pardi, A. Science, 1991 253, 191-194.
8. Heus, H. A.; Uhlenbeck, O. C.; Pardi, A. Nucleic Acids Res., 1990 18, 1103-1108.
9. Michel, F.; Westhof, E. J. Mol. Biol., 1990 1050, 585-610.
10. Hirao, I.; Ishida, N.; Watanabe, K.; Miura, K. Biochim. Biophys. Acta, 1990 20, 199-204.
11. Hirao, I.; Kawai, G.; Yoshizwa, S.; Nihshimura, Y.; Ishido, Y.; Watanabe, K.; Miura, K. Nucleic Acids Res., 1994 22, 576-582.
12. Zhu, L.; Chou, S.-H.; Xu, J.; Reid, B. R. Nature Struct. Biol., 1995 2, 1012-1017.
13. Bates, G.; Lenarch, H. BioEssay, 1994 14, 277-284.
14. Sutherland, G. R.; Richards, R. I. Nature Genet., 1995 6, 114-116.
15. Sandusky, P.; Wooten, E.W.; Kurochkin, A.V.; Kavanaugh, T.; Mandecki, W.; Zuiderweg, E.R.P. Nucleic Acids Res., 1995 23, 4717-4725.
16. Pardi, A.; Walker, R.; Rapoport, H.; Wider, G.; Wüthrich, K. J. Am. Chem. Soc., 1983 105, 1652-1653.
17. Wüthrich, K. NMR of Proteins and Nucleic Acids, Wiley, New York, 1986.
18. Willker, W.; Leibfritz, D.; Kerssebaum, R.; Bermel, W. Magn. Reson. Chem., 1993 31, 287-292.
19. Levitt, M.; Freeman, R.; Frenkiel, T. J. Magn. Reson., 1982 47, 328.
20. Van Halbeek, H.; Sheng, S.; Lescrinier, E.; De Bruyn, A.; Herdewijn, P. Semi-Selective F1-Decoupled TOCSY Recorded with Pulsed Field Gradients, 38th Experimental NMR Conference, Orlando, FL, USA, 1997, 23-27 March.
21. Summers, M. F.; Marzilli, L. G.; Bax, A. J. Am. Chem. Soc., 1986 108, 4285-4294.
22. Neuhaus, D.; Williamson, M. in The Nuclear Overhauser Effect in Structural and Conformational Analysis, New York, 1989.
23. Katahira, M.; Kanagawa, M. Sato, H.; Uesugi, S.; Fujui, S.; Kohno, T.; Maeda, T. Nucleic Acids Res., 1994 22, 1752-1759.
24. Blommers, M. J. J.; Van de Ven, F. J. M.; Van der Marel, G. A.; Van Boom, J. H.; Hilbers, C. W. Eur. J. Biochem., 1991 201, 33-51.
25. Mooren, M. M. W.; Pulleyblank, D. E.; Wijmenga, S. S.; van de Ven, F. J. M.; Hilbers, C. W. Biochemistry, 1994 33, 7315-7325.
26. Orbons, L. P. M.; van Beuzekom, A. A.; Altona, C. J. Biomol. Struct. Dynam., 1987 4, 965-987.
27. Dickerson, R. E. J. Mol. Biol., 1983 166, 419.
28. Dickerson, R. E.; Drew, H. R. J. Mol. Biol. 1981 149, 761.
29. Lankhorst, P. P.; Haasnoot, C. A.G.; Erkelens, C.; Altona, C. J. Biomol. Struct. Dyn., 1984 1, 1387.
30. Blommers, M.J.J.; Nanz, D.; Zerbe, O. J. Biomol. NMR, 1994 4, 595-601.
31. Plateau, P.; Guéron, M. J. Am. Chem. Soc., 1982 104, 7310-7311.
32. Piotto, M.; Saudek, V.; Sklenar, V. J. Biomol. NMR, 1992 2, 661-665.
33. States, D. J.; Haberkorn, R. A.; Ruben, D. J. J. Magn. Reson. 1982 48, 286-292
34. Scott, K.; Stonehouse, J.; Keeler, J.; Hwang, T.-L.; Shaka, A. J. J. Am. Chem. Soc., 1995 117, 4199-5200.