Genomic expansion across the albumin gene family on human chromosome 4q is directional

Biological Chemistry

Volumn 380, Issue 12, 1999, Pages 1431-1434

  Nishio, Hitomi ^b   Hamdi, Hamdi K ^c   Dugaiczyk, Achilles ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Centromere; Repetitive DNA; Symmetry

Indexed keywords

ALBUMIN; REPETITIVE DNA;

ARTICLE; CENTROMERE; CHROMOSOME 4Q; EVOLUTION; GENETIC ANALYSIS; GENOME; HUMAN; INTRON; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

EID: 0033377281     PISSN: 14316730     EISSN: None     Source Type: Journal    
DOI: 10.1515/BC.1999.183     Document Type: Article

References (31)

1. Bailey, A.D., and Shen, C.K. (1993). Sequential insertion of Alu family repeats into specific genomic sites of higher primates. Proc. Natl. Acad. Sci. USA 90, 7205-7209.
2. Baralle, F.E., Shoulders, C.C., and Proudfoot, N.J. (1980). The primary structure of the human epsilon-globin gene. Cell 21, 621-626.
3. Brini, A.T., Lee, G.M., and Kinet, J.P. (1993). Involvement of Alu sequences in the cell-specific regulation of transcription of the gamma chain of Fc and T cell receptors. J. Biol. Chem. 268, 1355-1361.
4. Collins, F.S., and Weissman, S.M. (1984). The molecular genetics of human hemoglobin. Prog. Nucleic Acid Res. Mol. Biol. 31, 315-462.
5. Efstratiadis, A., Posakony, J.W., Maniatis, T., Lawn, R.M., O'Connell, C., Spritz, R.A., DeRiel, J.K., Forget, B.G., Weissman, S.M., Slightom, J.L., Blechl, A.E., Smithies, O., Baralle, F.E., Shoulders, C.C., and Proudfoot, N.J. (1980). The structure and evolution of the human beta-globin gene family. Cell 21, 653-668.
6. Englander, E.W., and Howard, B.H. (1995). Nucleosome positioning by human Alu elements in chromatin. J. Biol. Chem. 270, 10091-10096.
7. Gibbs, P.E., and Dugaiczyk, A. (1987). Origin of structural domains of the serum-albumin gene family and a predicted structure of the gene for vitamin D-binding protein. Mol. Biol. Evol. 4, 364-379.
8. Gibbs, P.E., and Dugaiczyk, A. (1994). Reading the molecular clock from thedecay of internal symmetry of a gene. Proc. Natl. Acad. Sci. USA 91, 3413-3417.
9. Gibbs, P.E., Zielinski, R., Boyd, C., and Dugaiczyk, A. (1987). Structure, polymorphism, and novel repeated DNA elements revealed by a complete sequence of the human α-fetoprotein gene. Biochemistry 26, 1332-1343.
10. Hambor, J.E., Mennone, J., Coon, M.E., Hanke, J.H., and Kavathas, P. (1993). Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene. Mol. Cell. Biol. 13, 7056-7070.
11. Hardison, R.C., and Gelinas, R.E. (1986). Assignment of orthologous relationships among mammalian alpha-globin genes by examining flanking regions reveals a rapid rate of evolution. Mol. Biol. Evol. 3, 243-261.
12. Hsu, S.L., Marks, J., Shaw, J.P., Tam, M., Higgs, D.R., Shen, C.C., and Shen, C.K. (1988). Structure and expression of the human theta 1 globin gene. Nature 331, 94-96.
13. Lawn, R.M., Efstratiadis, A., O'Connell, C., and Maniatis, T. (1980). The nucleotide sequence of the human beta-globin gene. Cell 21, 647-651.
14. Liebhaber, S.A., Goossens, M.J., Kan, Y.W. (1980). Cloning and complete nucleotide sequence of human 5′-alpha-globin gene. Proc. Natl. Acad. Sci. USA 77, 7054-7058.
15. Maeda, N., Wu, C.I., Bliska, J., and Reneke, J. (1988). Molecular evolution of intergenic DNA in higher primates: pattern of DNA changes, molecular clock, and evolution of repetitive sequences. Mol. Biol. Evol. 5, 1-20.
16. Magenis, R.E., Sheehy, R., Dugaiczyk, A., and Gibbs, P.E.M. (1987). Chromosomal localization of the albumin and α-fetoprotein genes in the chimpanzee (Pan troglodytes). Cytogenet. Cell Genet. 46, 654.
17. Minghetti, P.P., and Dugaiczyk, A. (1993). The emergence of new DNA repeats and the divergence of primates. Proc. Natl. Acad. Sci. USA 90, 1872-1876.
18. Minghetti, P.P., Ruffner, D.E., Kuang, W.J., Dennison, O.E., Hawkins, J.W., Beattie, W.G., and Dugaiczyk, A. (1986). Molecular structure of the human albumin gene is revealed by nucleotide sequence within q11-22 of chromosome 4. J. Biol. Chem. 261, 6747-6757.
19. Nishio, H., Heiskanen, M., Palotie, A., Belanger, L., and Dugaiczyk, A. (1996). Tandem arrangement of the human serum albumin multigene family in the sub-centromeric region of 4q: evolution and chromosomal direction of transcription. J. Mol. Biol. 259, 113-119.
20. Nishio, H., and Dugaiczyk, A. (1996). Complete structure of the human α-albumin gene, a new member of the serum albumin multigene family. Proc. Natl. Acad. Sci. USA 93, 7557-7561.
21. Proudfoot, N.J., Gil, A., and Maniatis, T. (1982). The structure of the human zeta-globin gene and a closely linked, nearly identical pseudogene. Cell 31, 553-563.
22. Rogan, P.K., Pan, J., and Weissman, S.M. (1987). L1 repeat elements in the human epsilon-G gamma-globin gene intergenic region: sequence analysis and concerted evolution within this family. Mol. Biol. Evol. 4, 327-342.
23. Romero-Herrera, A.E., Lehmann, H., Joysey, K.A., and Friday, A.E. (1973). Molecular evolution of myoglobin and the fossil record: a phylogenetic synthesis. Nature 246, 389-395.
24. Sawada, I., Willard, C., Shen, C.K., Chapman, B., Wilson, A.C., and Schmid, C.W. (1985). Evolution of Alu family repeats since the divergence of human and chimpanzee. J. Mol. Evol. 22, 316-322.
25. Schon, E.A., Cleary, M.L., Haynes, J.R., and Lingrel, J.B. (1981). Structure and evolution of goat gamma-, beta C- and beta A-globin genes: three developmentally regulated genes contain inserted elements. Cell 27, 359-369.
26. Shapiro, S.G., Schon, E.A., Townes, T.M., and Lingrel, J.B. (1983). Sequence and linkage of the goat epsilon I and epsilon II beta-globin genes. J. Mol. Biol. 169, 31-52.
27. Slightom, J.L., Blechl, A.E., and Smithies, O. (1980). Human fetal G gamma- and A gamma-globin genes: complete nucleotide sequences suggest that DNA can be exchanged between these duplicated genes. Cell 21, 627-638.
28. Stanhope, M.J., Tagle, D.A, Shivji, M.S., Hattori, M., Sakaki, Y., Slightom, J.L., and Goodman, M. (1993). Multiple L1 progenitors in prosimian primates: phylogenetic evidence from ORF1 sequences. J. Mol. Evol. 37, 179-189.
29. Vansant, G., and Reynolds, W.F. (1995). The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element. Proc. Natl. Acad. Sci. USA 92, 8229-8233.
30. Witke, W.F., Gibbs, P.E., Zielinski, R., Yang, F., Bowman, B.H., and Dugaiczyk, A. (1993). Complete structure of the human Gc gene: differences and similarities between members of the albumin gene family. Genomics 16, 751-754.
31. Yunis, J.J., and Prakash, O. (1982). The origin of man: a chromosomal pictorial legacy. Science 215, 1525-1530.