메뉴 건너뛰기




Volumn 48, Issue 3, 1999, Pages 243-259

Technical aspects of random amplified polymorphic DNA (RAPD) technique in genotyping of bacterial strains

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DNA POLYMERASE;

EID: 0033373854     PISSN: 01371320     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (48)
  • 1
    • 0031082807 scopus 로고    scopus 로고
    • Corrected identity of isolates of Helicobacter pylori reference strain NCTC11637
    • Akopyantz N.S., Q. Jiang, D.E. Taylor and D.E. Berg. 1996. Corrected identity of isolates of Helicobacter pylori reference strain NCTC11637. Helicobacter 2:64-67.
    • (1996) Helicobacter , vol.2 , pp. 64-67
    • Akopyantz, N.S.1    Jiang, Q.2    Taylor, D.E.3    Berg, D.E.4
  • 2
    • 0026675742 scopus 로고
    • DNA diversity among clinical isolates of Helicobacter pylori by PCR-based RAPD fingerprinting
    • Akopyanz N.S, N.O. Bukanov, T.U. Westblom, S. Kresovich and D.E. Berg. 1992. DNA diversity among clinical isolates of Helicobacter pylori by PCR-based RAPD fingerprinting. Nucleic Acids Res. 20:5137-5142.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5137-5142
    • Akopyanz, N.S.1    Bukanov, N.O.2    Westblom, T.U.3    Kresovich, S.4    Berg, D.E.5
  • 3
    • 0029865928 scopus 로고    scopus 로고
    • Random amplified polymorphic DNA typing versus Pulsed-Field Gel Electrophoresis for epidemiological typing of vancomycin-resistant Enterococci
    • Barbier N., P. Saulnier, E. Chachaty, S. Dumontier and A. Andremont. 1996. Random amplified polymorphic DNA typing versus Pulsed-Field Gel Electrophoresis for epidemiological typing of vancomycin-resistant Enterococci. J. Clin. Microbiol. 43:1096-1099.
    • (1996) J. Clin. Microbiol. , vol.43 , pp. 1096-1099
    • Barbier, N.1    Saulnier, P.2    Chachaty, E.3    Dumontier, S.4    Andremont, A.5
  • 4
    • 0028314370 scopus 로고
    • DNA Fingerprinting of medically important microorganisms by use of PCR
    • Belkum A. 1994. DNA Fingerprinting of medically important microorganisms by use of PCR. Clin. Microbiol. Rev. 7:174-184.
    • (1994) Clin. Microbiol. Rev. , vol.7 , pp. 174-184
    • Belkum, A.1
  • 7
    • 0026619002 scopus 로고
    • Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides
    • Caetano-Anolles G., B.J. Bassam and P. Gresshoff. 1992b. Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides. Mol. Gen. Genet. 235:157-165.
    • (1992) Mol. Gen. Genet. , vol.235 , pp. 157-165
    • Caetano-Anolles, G.1    Bassam, B.J.2    Gresshoff, P.3
  • 8
    • 0027370474 scopus 로고
    • Enhanced detection of polymorphic DNA by multiple arbitrary amplicon profiling of endonuclease digested DNA: Identification of markers linked to the supernodulation locus in soybean
    • Caetano-Anolles G., B.J. Basaam and P.M. Gresshoff. 1993. Enhanced detection of polymorphic DNA by multiple arbitrary amplicon profiling of endonuclease digested DNA: identification of markers linked to the supernodulation locus in soybean. Mol. Gen. Genet. 241:57-64.
    • (1993) Mol. Gen. Genet. , vol.241 , pp. 57-64
    • Caetano-Anolles, G.1    Basaam, B.J.2    Gresshoff, P.M.3
  • 9
    • 0028233215 scopus 로고
    • DNA amplification fingerprinting using arbitrary mini-hairpin oligonucleotide primers
    • Caetano-Anolles G. and P.M. Gresshoff. 1994. DNA amplification fingerprinting using arbitrary mini-hairpin oligonucleotide primers. BioTechnology 12:619-623.
    • (1994) BioTechnology , vol.12 , pp. 619-623
    • Caetano-Anolles, G.1    Gresshoff, P.M.2
  • 10
    • 0028133521 scopus 로고
    • Comparison of ribotyping, pulsed-field gel electrophoresis and random amplified polymorphic DNA for typing Clostridium difficile strains
    • Chachaty E, P. Saulnier, A. Martin, N. Mario and A. Andremont. 1994. Comparison of ribotyping, pulsed-field gel electrophoresis and random amplified polymorphic DNA for typing Clostridium difficile strains. FEMS Microbiol. Lett. 122:61-68.
    • (1994) FEMS Microbiol. Lett. , vol.122 , pp. 61-68
    • Chachaty, E.1    Saulnier, P.2    Martin, A.3    Mario, N.4    Andremont, A.5
  • 11
    • 0013090324 scopus 로고    scopus 로고
    • Optimization of RAPD fingerprinting
    • M.R. Micheli, R. Bova (eds.), Springer-Verlag, Berlin Heidelberg
    • Cobb B.D. Optimization of RAPD fingerprinting, p. 93-102. In: M.R. Micheli, R. Bova (eds.), Fingerprinting methods based on arbitrarily primed PCR. Springer-Verlag, Berlin Heidelberg.
    • Fingerprinting Methods Based on Arbitrarily Primed PCR , pp. 93-102
    • Cobb, B.D.1
  • 12
    • 85046519947 scopus 로고
    • Detection of molecular variation in the insect pathogenic fungus Metarhizium using RAP-PCR
    • Cobb B.D. and J. M. Clarkson. 1993. Detection of molecular variation in the insect pathogenic fungus Metarhizium using RAP-PCR. FEMS Microbiol. Lett. 112:319-324.
    • (1993) FEMS Microbiol. Lett. , vol.112 , pp. 319-324
    • Cobb, B.D.1    Clarkson, J.M.2
  • 13
    • 0030017015 scopus 로고    scopus 로고
    • Transient and persistent experimental infection of nonhuman primates with Helicobacter pylori: Implications for human disease
    • Dubois A., D.E. Berg, E.T. Incecik, N. Fiala, L.M. Heman-Ackah, G.I. Perez-Perez and J. Blaser. 1996. Transient and persistent experimental infection of nonhuman primates with Helicobacter pylori: implications for human disease. Infect. Immun. 64:2885-2891.
    • (1996) Infect. Immun. , vol.64 , pp. 2885-2891
    • Dubois, A.1    Berg, D.E.2    Incecik, E.T.3    Fiala, N.4    Heman-Ackah, L.M.5    Perez-Perez, G.I.6    Blaser, J.7
  • 14
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes. Characterisation of a gene coding for 16S ribosomal RNA
    • Edwards U., T. Rogall, H. Blocker, M. Emde and E. C. Bottger. 1989. Isolation and direct complete nucleotide determination of entire genes. Characterisation of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17:7843-7853.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blocker, H.3    Emde, M.4    Bottger, E.C.5
  • 15
    • 0027508951 scopus 로고
    • Artifactual variation in randomly amplified polymorphic DNA banding patterns
    • Ellsworth D.L., K.D. Rittenhouse and E. L. Honeycutt. 1993. Artifactual variation in randomly amplified polymorphic DNA banding patterns. BioTechniques 14:214-217.
    • (1993) BioTechniques , vol.14 , pp. 214-217
    • Ellsworth, D.L.1    Rittenhouse, K.D.2    Honeycutt, E.L.3
  • 17
    • 0031976926 scopus 로고    scopus 로고
    • Evolutionary divergence of AP-PCR (RAPD) patterns
    • Espinasa L. and R. Borowsky. 1998. Evolutionary divergence of AP-PCR (RAPD) patterns. Mol. Biol. Evol. 15:408-414.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 408-414
    • Espinasa, L.1    Borowsky, R.2
  • 19
    • 0025875952 scopus 로고
    • Eliminating PCR contamination: Is UV irradiation the answer?
    • Fox J.C., M. Ait-Khaled, A. Webster, and V.C. Emery. 1991. Eliminating PCR contamination: is UV irradiation the answer? J. Virol. Meth. 33:375-382.
    • (1991) J. Virol. Meth. , vol.33 , pp. 375-382
    • Fox, J.C.1    Ait-Khaled, M.2    Webster, A.3    Emery, V.C.4
  • 20
    • 6744244997 scopus 로고    scopus 로고
    • Genotyping as a tool of monitoring the treatment and epidemiological family studies of H. pylori infection
    • Gzyl A., D.E. Berg, E. Augustynowicz, E. Rożynek and D. Dzierżanowska. 1997. Genotyping as a tool of monitoring the treatment and epidemiological family studies of H. pylori infection. Clin. Microbiol. Infect. 3 (suppl. 2): P942.
    • (1997) Clin. Microbiol. Infect. , vol.3 , Issue.2 SUPPL.
    • Gzyl, A.1    Berg, D.E.2    Augustynowicz, E.3    Rozynek, E.4    Dzierzanowska, D.5
  • 21
    • 0028560370 scopus 로고
    • Computing genetic similarity coefficients from RAPD data: The effects of PCR artifacts
    • Lambloy W.F. 1994. Computing genetic similarity coefficients from RAPD data: The effects of PCR artifacts. PCR Meth. Applicat. 4:31-37.
    • (1994) PCR Meth. Applicat. , vol.4 , pp. 31-37
    • Lambloy, W.F.1
  • 23
    • 0029039869 scopus 로고
    • Arbitrarily primed PCR DNA fingerprinting of Esherichia coli O157:H7 strains by using templates from boiled cultures
    • Madico G., N.S. Akopyants and D.E. Berg. 1995. Arbitrarily primed PCR DNA fingerprinting of Esherichia coli O157:H7 strains by using templates from boiled cultures. J. Med. Microbiol. 33:1534-1538.
    • (1995) J. Med. Microbiol. , vol.33 , pp. 1534-1538
    • Madico, G.1    Akopyants, N.S.2    Berg, D.E.3
  • 24
    • 0028793864 scopus 로고
    • Obtaining genetic markers by using double-stringency PCR with microsatellites and arbitrary primers
    • Matioli S.R and R. deBrito. 1995. Obtaining genetic markers by using double-stringency PCR with microsatellites and arbitrary primers. BioTechnique 19:752-756.
    • (1995) BioTechnique , vol.19 , pp. 752-756
    • Matioli, S.R.1    DeBrito, R.2
  • 25
    • 0027219174 scopus 로고
    • PCR fingerprinting microbes by random amplification of polymorphic DNA
    • Matthiews R.C. 1993. PCR fingerprinting microbes by random amplification of polymorphic DNA. J. Med. Microbiol. 39:161-168.
    • (1993) J. Med. Microbiol. , vol.39 , pp. 161-168
    • Matthiews, R.C.1
  • 26
    • 0026755753 scopus 로고
    • Length polymorphisms in tRNA intergenic spacers detected by using the polymerase chain reaction can distinguish Streptococcal strains and species
    • McClelland M., Ch. Petersen and J. Welsh. 1992. Length polymorphisms in tRNA intergenic spacers detected by using the polymerase chain reaction can distinguish Streptococcal strains and species. J. Clin. Microbiol. 30:1499-1504.
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 1499-1504
    • McClelland, M.1    Petersen, Ch.2    Welsh, J.3
  • 27
    • 0027999503 scopus 로고
    • Interactions among regulators of RNA abundance characterized using RNA fingerprinting by arbitrarily primed PCR
    • McClelland M., K. Ralph, R. Cheng and J. Welsh. 1994. Interactions among regulators of RNA abundance characterized using RNA fingerprinting by arbitrarily primed PCR. Nucleic Acids Res. 22:4419-4431.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4419-4431
    • McClelland, M.1    Ralph, K.2    Cheng, R.3    Welsh, J.4
  • 28
    • 0028568235 scopus 로고
    • DNA fingerprinting by arbitrarily Primed PCR
    • McClelland M. and J. Welsh. 1994. DNA fingerprinting by arbitrarily Primed PCR. PCR Meth Applic. 4:S59-S65.
    • (1994) PCR Meth Applic. , vol.4
    • McClelland, M.1    Welsh, J.2
  • 29
    • 0022345450 scopus 로고
    • Characterization of "Campylobacter pyloridis" by culture, enzymatic profile, protein content
    • Megraud F., F. Bonnet, M. Garnier and H. Lamouliatte. 1985. Characterization of "Campylobacter pyloridis" by culture, enzymatic profile, protein content. J. Clin. Microbiol. 22:1007-1010.
    • (1985) J. Clin. Microbiol. , vol.22 , pp. 1007-1010
    • Megraud, F.1    Bonnet, F.2    Garnier, M.3    Lamouliatte, H.4
  • 30
    • 0027669067 scopus 로고
    • Randomly amplified polymorphic DNA fingerprinting using combinations of oligonucleotide primers
    • Micheli M.R., R. Bova, P. Calissano and E. D' Ambrosio. 1993. Randomly amplified polymorphic DNA fingerprinting using combinations of oligonucleotide primers. BioTechniques 15:388-390.
    • (1993) BioTechniques , vol.15 , pp. 388-390
    • Micheli, M.R.1    Bova, R.2    Calissano, P.3    D' Ambrosio, E.4
  • 31
    • 0028292589 scopus 로고
    • Reproducible DNA fingerprinting with the random amplified polymorphic DNA (RAPD) method
    • Micheli M.R, R. Bova, E. Pascale and E. D' Ambrosio. 1994. Reproducible DNA fingerprinting with the random amplified polymorphic DNA (RAPD) method. Nucleic Acids Res. 22:1921-1922.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1921-1922
    • Micheli, M.R.1    Bova, R.2    Pascale, E.3    D' Ambrosio, E.4
  • 32
    • 0027447367 scopus 로고
    • Concentration of primer and templatae qualitatively affects products in random-amplified polymorphic DNA PCR
    • Muralidharan K. and E.K. Wakeland. 1993. Concentration of primer and templatae qualitatively affects products in random-amplified polymorphic DNA PCR. BioTechniques 14:362-364.
    • (1993) BioTechniques , vol.14 , pp. 362-364
    • Muralidharan, K.1    Wakeland, E.K.2
  • 33
    • 0027440501 scopus 로고
    • Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories
    • Penner G.A., A. Bush and R. Wise. 1993. Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Meth. Applic. 2:341
    • (1993) PCR Meth. Applic. , vol.2 , pp. 341
    • Penner, G.A.1    Bush, A.2    Wise, R.3
  • 34
    • 0030443332 scopus 로고    scopus 로고
    • RAPD typing in microbiology - A technical review
    • Power E.G.M. 1996. RAPD typing in microbiology - a technical review J. Hosp. Inf. 34:247-256.
    • (1996) J. Hosp. Inf. , vol.34 , pp. 247-256
    • Power, E.G.M.1
  • 35
    • 0028921419 scopus 로고
    • DNA fingerprinting of crude bacterial lysates using degenerate RAPD primers
    • Sakallah S.A., R.W. Lanning, and D.L. Cooper. 1995. DNA fingerprinting of crude bacterial lysates using degenerate RAPD primers. PCR Meth. Applic. 4:265-268.
    • (1995) PCR Meth. Applic. , vol.4 , pp. 265-268
    • Sakallah, S.A.1    Lanning, R.W.2    Cooper, D.L.3
  • 36
    • 0021669070 scopus 로고
    • Repetitive Extragenic Palindromic Sequences: A major component of the bacterial genome
    • Stern M.J., G.F.L. Ames, N. H. Smith, E.C. Robinson and C.F. Higgins. 1984. Repetitive Extragenic Palindromic Sequences: a major component of the bacterial genome. Cell 37:1015-1026.
    • (1984) Cell , vol.37 , pp. 1015-1026
    • Stern, M.J.1    Ames, G.F.L.2    Smith, N.H.3    Robinson, E.C.4    Higgins, C.F.5
  • 37
    • 0031020989 scopus 로고    scopus 로고
    • Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens
    • Tayler K.D., G. Wang, S.D. Tyler and W.M. Johnson. 1997. Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens. J. Clin. Microbiol 35:339-346.
    • (1997) J. Clin. Microbiol , vol.35 , pp. 339-346
    • Tayler, K.D.1    Wang, G.2    Tyler, S.D.3    Johnson, W.M.4
  • 38
    • 0029134774 scopus 로고
    • Interpreting chromosomal DNA restriction patterns produced by pulsed-field electrophoresis. criteria for bacterial strain typing
    • Tenover F.C., R.D. Arbeit and R.V. Goering. 1995. Interpreting chromosomal DNA restriction patterns produced by pulsed-field electrophoresis. criteria for bacterial strain typing. J. Clin. Microbiol. 33:2233-2239.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 2233-2239
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3
  • 39
    • 0030608708 scopus 로고    scopus 로고
    • Clinical and epidemiologic significance of Enterococci intrinsically resistant to vancomycin (possessing the vanC genotype)
    • Toye B., J. Shymanski, M. Bobrowska, W. Woods and K. Ramotar. 1997. Clinical and epidemiologic significance of Enterococci intrinsically resistant to vancomycin (possessing the vanC genotype). J. Clin. Microbiol. 35:3166-3170.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 3166-3170
    • Toye, B.1    Shymanski, J.2    Bobrowska, M.3    Woods, W.4    Ramotar, K.5
  • 40
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • Versalovic J., T. Koeuth and J.R. Lubski. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19:6823-6831.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lubski, J.R.3
  • 41
    • 0028834605 scopus 로고
    • AFLP: A new technique for DNA fingerprinting
    • Vos P., R. Hogers and M. Bleeker. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23:4407-4414.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4407-4414
    • Vos, P.1    Hogers, R.2    Bleeker, M.3
  • 42
    • 0025633560 scopus 로고
    • Fingerprinting genomes using PCR with arbitrary primers
    • Welsh J. and M. McClelland. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:7213-7218.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 7213-7218
    • Welsh, J.1    McClelland, M.2
  • 43
    • 0026044143 scopus 로고
    • Genomic fingerprinting using arbitrarily primed PCR and a matrix of pairwise combinations of primers
    • Welsh J. and M. McClelland. 1991. Genomic fingerprinting using arbitrarily primed PCR and a matrix of pairwise combinations of primers. Nucleic Acids Res. 19:5275-5279.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 5275-5279
    • Welsh, J.1    McClelland, M.2
  • 44
    • 0026696076 scopus 로고
    • PCR-amplified lenght polymorphism in tRNA intergenic spacers for categorizing staphylococci
    • Welsh J. and M. McClelland. 1992. PCR-amplified lenght polymorphism in tRNA intergenic spacers for categorizing staphylococci. Mol. Microbiol. 6:1673-1680.
    • (1992) Mol. Microbiol. , vol.6 , pp. 1673-1680
    • Welsh, J.1    McClelland, M.2
  • 45
    • 0026693538 scopus 로고
    • Genomic fingerprinting by arbitrarily primed polymerase chain reaction resolves Borrelia burgdorferi into three distinct phyletic groups
    • Welsh J., C. Pretzman and D. Postic. 1992. Genomic fingerprinting by arbitrarily primed polymerase chain reaction resolves Borrelia burgdorferi into three distinct phyletic groups. Int J. Syst. Bacteriol. 42:370-377.
    • (1992) Int J. Syst. Bacteriol. , vol.42 , pp. 370-377
    • Welsh, J.1    Pretzman, C.2    Postic, D.3
  • 46
    • 6744270469 scopus 로고    scopus 로고
    • Epidemiological analysis by RAPD and PFGE of Enterococcus strains isolated from patients with systemic infection
    • Wieczyńska J., E. Augustynowicz, U. Łopaciuk and D. Dzierżanowska. 1997. Epidemiological analysis by RAPD and PFGE of Enterococcus strains isolated from patients with systemic infection. Clin. Microbiol. Infect. 3 (suppl. 2):P459.
    • (1997) Clin. Microbiol. Infect. , vol.3 , Issue.2 SUPPL.
    • Wieczyńska, J.1    Augustynowicz, E.2    Łopaciuk, U.3    Dzierzanowska, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.