-
1
-
-
0002524447
-
Cold Spring Harbor laboratory, Cold Spring Harbor, Bending of DNA
-
Cozzarelli N.R. and Wang J.C. (eds)
-
Travers A.A. and Klug A.: Cold Spring Harbor laboratory, Cold Spring Harbor, Bending of DNA. In: Cozzarelli N.R. and Wang J.C. (eds) DNA Topology and its Biological Effects. (1990) pp. 57-106.
-
(1990)
DNA Topology and Its Biological Effects
, pp. 57-106
-
-
Travers, A.A.1
Klug, A.2
-
2
-
-
0000541574
-
Twenty years of DNA bending
-
Sarma R.H. and Sarma M.H. (eds), Adenine Press, Schenectady
-
Olson W.K. and Zhurkin V.B.: Twenty years of DNA bending. In: Sarma R.H. and Sarma M.H. (eds), Biological Structure and Dynamics. Adenine Press, Schenectady, Vol. 2, (1996), pp. 341-370.
-
(1996)
Biological Structure and Dynamics
, vol.2
, pp. 341-370
-
-
Olson, W.K.1
Zhurkin, V.B.2
-
3
-
-
0030005131
-
Simulating DNA at low resolution
-
Olson W.K.: Simulating DNA at low resolution, Curr. Opin. Struct. Biol. 6 (1996): 242-256.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 242-256
-
-
Olson, W.K.1
-
4
-
-
85047672134
-
DNA supercoiling, localized bending and thermal fluctuations (letter) Trends
-
Langowski J., Olson W.K., Pedersen S.C., Tobias I., Westcott T.P. and Yang Y.: DNA supercoiling, localized bending and thermal fluctuations (letter) Trends. Biochem. Sci. 21 (1996): 50.
-
(1996)
Biochem. Sci.
, vol.21
, pp. 50
-
-
Langowski, J.1
Olson, W.K.2
Pedersen, S.C.3
Tobias, I.4
Westcott, T.P.5
Yang, Y.6
-
5
-
-
0001415964
-
The pitch of chromatin DNA is reflected in its nucleotide sequence
-
Trifonov E.N. and Sussman J.L.: The pitch of chromatin DNA is reflected in its nucleotide sequence, Proc. Natl. Acad. Sci. USA 77 (1980): 3816-3820.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 3816-3820
-
-
Trifonov, E.N.1
Sussman, J.L.2
-
6
-
-
0021268779
-
The locus of sequence-directed and protein-induced DNA bending
-
Wu H.M. and Crothers D.M.: The locus of sequence-directed and protein-induced DNA bending, Nature 308 (1984): 509-513.
-
(1984)
Nature
, vol.308
, pp. 509-513
-
-
Wu, H.M.1
Crothers, D.M.2
-
7
-
-
0023001414
-
Sequence periodicities in chicken nucleosome core DNA
-
Satchwell S.C., Drew H.R. and Travers A.A.: Sequence periodicities in chicken nucleosome core DNA, J. Mol. Biol. 191 (1986): 659-675.
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 659-675
-
-
Satchwell, S.C.1
Drew, H.R.2
Travers, A.A.3
-
8
-
-
0027209077
-
Evidence for opposite groove-directed curvature of GG-GCCC and AAAAA sequence elements
-
Brukner I., Dlakic M., Savic A., Susic S., Pongor S. and Suck D.: Evidence for opposite groove-directed curvature of GG-GCCC and AAAAA sequence elements, Nucleic Acids Res. 21 (1993): 1025-1029.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 1025-1029
-
-
Brukner, I.1
Dlakic, M.2
Savic, A.3
Susic, S.4
Pongor, S.5
Suck, D.6
-
10
-
-
0025078851
-
Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature
-
De Santis P., Palleschi A., Savino M. and Scipioni A.: Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature, Biochemistry 29 (1990): 9269-9273.
-
(1990)
Biochemistry
, vol.29
, pp. 9269-9273
-
-
De Santis, P.1
Palleschi, A.2
Savino, M.3
Scipioni, A.4
-
11
-
-
0029000481
-
Flexing and folding double helical DNA
-
Olson W.K. et al.: Flexing and folding double helical DNA, Biophys. Chem. 55 (1995): 7-29.
-
(1995)
Biophys. Chem.
, vol.55
, pp. 7-29
-
-
Olson, W.K.1
-
12
-
-
0029023343
-
NUPARM and NUCGEN: Software for analysis and generation of sequence dependent nucleic acid structures
-
Bansal M., Bhattacharyya D. and Ravi B.: NUPARM and NUCGEN: Software for analysis and generation of sequence dependent nucleic acid structures, Comput. Appl. Biosci. 11 (1995): 281-287.
-
(1995)
Comput. Appl. Biosci.
, vol.11
, pp. 281-287
-
-
Bansal, M.1
Bhattacharyya, D.2
Ravi, B.3
-
13
-
-
0028863271
-
Statistical analysis of DNA duplex structural features
-
Ulyanov N.B. and James T.L.: Statistical analysis of DNA duplex structural features, Methods Enzymol. 261 (1995): 90-120.
-
(1995)
Methods Enzymol
, vol.261
, pp. 90-120
-
-
Ulyanov, N.B.1
James, T.L.2
-
14
-
-
0030576982
-
Correlation of intrinsic DNA curvature with DNA property periodicity
-
Gabrielian A. and Pongor S.: Correlation of intrinsic DNA curvature with DNA property periodicity, Febs. Lett. 393 (1996): 65-68.
-
(1996)
Febs. Lett.
, vol.393
, pp. 65-68
-
-
Gabrielian, A.1
Pongor, S.2
-
15
-
-
0028624664
-
Bending and curvature calculations in B-DNA
-
Goodsell D.S. and Dickerson R.E.: Bending and curvature calculations in B-DNA, Nucleic Acids Res. 22 (1994): 5497-5503.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 5497-5503
-
-
Goodsell, D.S.1
Dickerson, R.E.2
-
16
-
-
0029126044
-
The assessment of the geometry of dinucleotide steps in double-helical DNA; a new local calculation scheme
-
el Hassan M.A. and Calladine C.R.: The assessment of the geometry of dinucleotide steps in double-helical DNA; a new local calculation scheme J. Mol. Biol. 251 (1995): 648-664.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 648-664
-
-
El Hassan, M.A.1
Calladine, C.R.2
-
17
-
-
0027159716
-
A gel-concentration-independent retardation detected in two fragments of the rrnB P1 promoter of E. coli using transverse polyacrylamide pore gradient gel electrophoresis
-
Wheeler D.: A gel-concentration-independent retardation detected in two fragments of the rrnB P1 promoter of E. coli using transverse polyacrylamide pore gradient gel electrophoresis, Biochem. Biophys. Res. Commun. 193 (1993): 413-419.
-
(1993)
Biochem. Biophys. Res. Commun.
, vol.193
, pp. 413-419
-
-
Wheeler, D.1
-
19
-
-
0031874431
-
DIAMOD: Display and modeling of DNA bending
-
Dlakic M.: DIAMOD: Display and modeling of DNA bending, Bioinformatics 14 (1998): 326-331.
-
(1998)
Bioinformatics
, vol.14
, pp. 326-331
-
-
Dlakic, M.1
-
23
-
-
0027398354
-
Twist and writhe of a DNA loop containing intrinsic bends
-
Bauer W.R., Lund R.A. and White J.H.: Twist and writhe of a DNA loop containing intrinsic bends, Proc. Natl. Acad. Sci. USA 90 (1993): 833-837.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 833-837
-
-
Bauer, W.R.1
Lund, R.A.2
White, J.H.3
-
24
-
-
0000091323
-
Finite element analysis of DNA supercoiling
-
Yang Y., Tobias I. and Olson W.K.: Finite element analysis of DNA supercoiling, J. Chem. Phy. 98 (1993): 1673-1686.
-
(1993)
J. Chem. Phy.
, vol.98
, pp. 1673-1686
-
-
Yang, Y.1
Tobias, I.2
Olson, W.K.3
-
25
-
-
0027979013
-
Computer simulation of protein-induced structural changes in closed circular
-
Zhang P., Tobias I. and Olson W.K.: Computer simulation of protein-induced structural changes in closed circular, J. Mol. Biol. 242 (1994): 271-290.
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 271-290
-
-
Zhang, P.1
Tobias, I.2
Olson, W.K.3
-
26
-
-
0028801067
-
Action at a distance: DNA-looping and initiation of transcription
-
Rippe K., von Hippel P. and Langowski J.: Action at a distance: DNA-looping and initiation of transcription, Trends Biochem. Sci. 20 (1995): 500-506.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 500-506
-
-
Rippe, K.1
Von Hippel, P.2
Langowski, J.3
-
27
-
-
0016382119
-
Flexibility of DNA
-
Schellman J.A.: Flexibility of DNA, Biopolymers 13 (1974): 217-226.
-
(1974)
Biopolymers
, vol.13
, pp. 217-226
-
-
Schellman, J.A.1
-
28
-
-
0018447932
-
Anisotropic flexibility of DNA and the nucleosomal structure
-
Zhurkin V.B., Lysov Y.P. and Ivanov V.I.: Anisotropic flexibility of DNA and the nucleosomal structure, Nucleic Acids Res. 6 (1979): 1081-1096.
-
(1979)
Nucleic Acids Res.
, vol.6
, pp. 1081-1096
-
-
Zhurkin, V.B.1
Lysov, Y.P.2
Ivanov, V.I.3
-
29
-
-
0029039118
-
Sequence-dependent bending propensity of DNA as revealed by DNase I: Parameters for trinucleotides
-
Brukner I., Sanchez R., Suck D. and Pongor S.: Sequence-dependent bending propensity of DNA as revealed by DNase I: Parameters for trinucleotides, Embo J. 14 (1995): 1812-1818.
-
(1995)
Embo J.
, vol.14
, pp. 1812-1818
-
-
Brukner, I.1
Sanchez, R.2
Suck, D.3
Pongor, S.4
-
31
-
-
0010228542
-
Prediction of bendability and curvature in genomic DNA
-
Sarma R.H. and Sarma M.H. (eds), Adenine Press, Cininnati, NY
-
Gabrielian A., Vlahovicek K., Munteanu M.M., Gromiha M.M., Brukner I., Sanchez R. and Pongor S.: Prediction of bendability and curvature in genomic DNA. In: Sarma R.H. and Sarma M.H. (eds), Structure, Motion, Interaction and Expression, Adenine Press, Cininnati, NY, Vol. 1, 1998, pp. 117-132.
-
(1998)
Structure, Motion, Interaction and Expression
, vol.1
, pp. 117-132
-
-
Gabrielian, A.1
Vlahovicek, K.2
Munteanu, M.M.3
Gromiha, M.M.4
Brukner, I.5
Sanchez, R.6
Pongor, S.7
-
34
-
-
0021691817
-
Analysis of membrane and surface protein sequences with the hydrophobic moment plot
-
Eisenberg D., Schwarz E., Komaromy M. and Wall R.: Analysis of membrane and surface protein sequences with the hydrophobic moment plot J. Mol. Biol. 179 (1984): 125-142.
-
(1984)
J. Mol. Biol.
, vol.179
, pp. 125-142
-
-
Eisenberg, D.1
Schwarz, E.2
Komaromy, M.3
Wall, R.4
-
35
-
-
0029872258
-
A useful role for 'static' models in elucidating the behaviour of DNA in solution
-
Calladine C.R. and Drew H.R.: A useful role for 'static' models in elucidating the behaviour of DNA in solution, J. Mol. Biol. 257 (1996): 479-485.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 479-485
-
-
Calladine, C.R.1
Drew, H.R.2
-
36
-
-
0030576959
-
Distribution of bending propensity in DNA sequences
-
Gabrielian A., Simoncsits A. and Pongor S.: Distribution of bending propensity in DNA sequences, Febs. Lett. 393 (1996): 124-130.
-
(1996)
Febs. Lett.
, vol.393
, pp. 124-130
-
-
Gabrielian, A.1
Simoncsits, A.2
Pongor, S.3
-
38
-
-
1842301048
-
Structural analysis of mouse rDNA: Coincidence between nuclease hypersensitive sites, DNA curvature and regulatory elements in the intergenic spacer
-
Langst G., Schatz T., Langowski J. and Grummt I.: Structural analysis of mouse rDNA: Coincidence between nuclease hypersensitive sites, DNA curvature and regulatory elements in the intergenic spacer, Nucleic Acids Res. 25 (1997): 511-517.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 511-517
-
-
Langst, G.1
Schatz, T.2
Langowski, J.3
Grummt, I.4
-
39
-
-
0002216927
-
Nonlinear DNA dynamics: Hierarchy of the models
-
Yakushevich L.V.: Nonlinear DNA dynamics: Hierarchy of the models Physica D. 79 (1994): 77-86.
-
(1994)
Physica D
, vol.79
, pp. 77-86
-
-
Yakushevich, L.V.1
-
40
-
-
0029664336
-
Molecular modelling of (A4T4NN)n and (T4A4NN)n: Sequence elements responsible for curvature
-
Sanghani S.R., Zakrzewska K., Harvey S.C. and Lavery R.: Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature, Nucleic Acids Res. 24 (1996): 1632-1637.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1632-1637
-
-
Sanghani, S.R.1
Zakrzewska, K.2
Harvey, S.C.3
Lavery, R.4
-
41
-
-
0028931709
-
B-DNA twisting correlates with base-pair morphology
-
Gorin A.A., Zhurkin V.B. and Olson W.K.: B-DNA twisting correlates with base-pair morphology, J. Mol. Biol. 247 (1995): 34-48.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 34-48
-
-
Gorin, A.A.1
Zhurkin, V.B.2
Olson, W.K.3
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