Sequence variation and evolution of the mitochondrial DNA control region in the musk shrew, Suncus murinus

Genes and Genetic Systems

Volumn 74, Issue 5, 1999, Pages 257-266

  Yamagata, Takahiro ^a   Namikawa, Takao ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

CONFERENCE PAPER; DNA REPLICATION; DNA SEQUENCE; EVOLUTION; INSECTIVORE; MITOCHONDRION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; TANDEM REPEAT;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENOME; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; REGULATORY SEQUENCES, NUCLEIC ACID; SHREWS; TANDEM REPEAT SEQUENCES; VARIATION (GENETICS);

ANIMALIA; INSECTIVORA; MAMMALIA; SUNCUS; SUNCUS MURINUS;

EID: 0033368525     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.74.257     Document Type: Conference Paper

References (26)

1. Arnason, E. and Rand, D. M. (1992) Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua. Genetics 132, 211-220.
2. Biju-Duval, C., Ennaffa, H., Dennebouy, N., Monnert, M., Mignotte, F., Soriguer, R. C., El Gaaïed, A., El Hili, A. and Mounolou, J. -C. (1991) Mitochondrial DNA evolution in lagomorphs: origin of systematic heteroplasmy and organization of diversity in European rabbits. J. Mol. Evol. 33, 92-102.
3. Brown, G. G., Gadaleta, G., Pepe, G., Saccone, C. and Sbisà, E. (1986) Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J. Mol. Biol. 192, 503-511.
4. Buroker, N. E., Brown, J. R., Gilbert, T. A., O'Hara, P. J., Beckenbach, A. T., Thomas, T. K. and Smith, M. J. (1990) Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model. Genetics 124, 157-163.
5. Doda, J. N., Wright, C. T. and Clayton, D. A. (1981) Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc. Natl. Acad. Sci. USA 78, 6116-6120.
6. Douzery, E. and Randi, E. (1997) The mitochondrial control region of Cervidae: Evolutionary patterns and phylogenetic content. Mol. Biol. Evol. 14, 1154-1166.
7. Felsenstein, J. (1995) PHYLIP (Phytogeny Inference Package) ver. 3.572. Univ. of Washington, Seattle.
8. Fumagalli, L., Taberlet, P., Favre, L. and Hausser, J. (1996) Origin and evolution of homologous repeated sequences in the mitochondrial DNA control region of shrews. Mol. Biol. Evol. 13, 31-46.
9. Hayasaka, K., Ishida, T. and Horai, S. (1991) Heteroplasmy and polymorphism on Japanese monkey: association with tandemly repeated sequences. Mol. Biol. Evol. 8, 399-415.
10. Johansen, S., Guddal, P. H., and Johansen, T. (1990) Organization of the mitochondrial genome of Atlantic cod, Gadus morhua. Nucleic Acids Res. 18, 411-419.
11. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
12. MacKay, S. L. D., Olivo, P. D., Laipis, P. J., and Hauswirth, W. W. (1986) Template-directed arrest of mammalian mitochondrial DNA synthesis. Mol. Cell. Biol. 6, 1261-1267.
13. Madsen, C. S., Ghivizzani, S. C., and Hauswirth, W. M. (1993a) In vivo and in vitro evidence for slipped mispairing in mammalian mitochondria. Proc. Natl. Acad. Sci. USA 90, 7671-7675.
14. Madsen, C. S., Ghivizzani, S. C., and Hauswirth, W. M. (1993b) Protein binding to a single termination-associated sequence in the mitochondrial DNA D-loop region. Mol. Cell. Biol. 13, 2162-2172.
15. Prager, E. M., Tichy, H., and Sage, R. D. (1996) Mitochondrial DNA sequence variation in the Eastern house mouse, Mus musculus: comparison with other house mice and report of a 75-bp tandem repeat. Genetics 143, 427-446.
16. Saccone, C., Pesole, G., and Sbisà, E. (1991) The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. J. Mol. Evol. 33, 83-91.
17. Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
18. Sbisà, E., Tanzariello, F., Reyes, A., Pesole, G., and Saccone, C. (1997) Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205, 125-140.
19. Stewart, D. T., and Baker, A. J. (1994) Patterns of sequence variation in mitochondrial D-loop region of shrews. Mol. Biol. Evol. 11, 9-21.
20. Tamura, K., and Aotsuka, T. (1988) Rapid isolation method of animal mitochondrial DNA. Biochem. Genet. 26, 815-819.
21. Wilkinson, G. S., and Chapman, A. M. (1991) Length and sequence variation in evening bat D-loop mtDNA. Genetics 128, 607-617.
22. Wilkinson, G. S., Mayer, F., Kerth, G., and Petri, B. (1997) Evolution of repeated sequence arrays in the D-loop region of bat mitochondrial DNA. Genetics 146, 1035-1048.
23. Yamagata, T., Ohishi, K., Faruque, M. O., Masangkay, J. S., Ba-Loc, C., Vu-Binh, D., Mansjoer, S. S., Ikeda, H., and Namikawa, T. (1995) Genetic variation and geographic distribution on the mitochondrial DNA in local populations of the musk shrew, Suncus murinus. Jpn. J. Genet. 70, 321-337.
24. Yamagata, T., Tanaka, Y., Ishikawa, A., Namikawa, T., and Tomita, T. (1990) Genetic relationship among the musk shrews, Suncus murinus Insectivora, inhabiting islands and the continent based on mitochondrial DNA types. Biochem. Genet. 28, 185-195.
25. Yang, Y. -G., Lin, Y. -S., Wu, J. -L., and Hui, C. -F. (1994) Variation in mitochondrial DNA and population structure of the Taipei treefrog Rhacophorus taipeianus in Taiwan. Mol. Ecol. 3, 219-228.
26. Zuker, M., and Stiegler, P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acid Res. 9, 133-148.